RNA–Protein interactions for RNA: ENST00000561818.1

VPS39-204, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 537 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-204ENST00000561818 ANTXR1Q9H6X2 564 aa9.02□□□□□ -0.97
VPS39-204ENST00000561818 CNNM1Q9NRU3 951 aa9.02□□□□□ -0.97
VPS39-204ENST00000561818 DBNLQ9UJU6 430 aaKnown RBP9.02□□□□□ -0.97
VPS39-204ENST00000561818 RTCBQ9Y3I0 505 aaKnown RBP9.02□□□□□ -0.97
VPS39-204ENST00000561818 ATP6V1DQ9Y5K8 247 aa9.02□□□□□ -0.97
VPS39-204ENST00000561818 NUP98P52948 1817 aa9.02□□□□□ -0.97
VPS39-204ENST00000561818 MED23Q9ULK4 1368 aa9.01□□□□□ -0.97
VPS39-204ENST00000561818 A0A1B0GUL7 405 aa9.01□□□□□ -0.97
VPS39-204ENST00000561818 SSFA2P28290 1259 aa9.01□□□□□ -0.97
VPS39-204ENST00000561818 ATP2B3Q16720 1220 aa9.01□□□□□ -0.97
VPS39-204ENST00000561818 MCMDC2Q4G0Z9 681 aa9.01□□□□□ -0.97
VPS39-204ENST00000561818 VPS53Q5VIR6 699 aa9.01□□□□□ -0.97
VPS39-204ENST00000561818 CWC27Q6UX04 472 aaKnown RBP9.01□□□□□ -0.97
VPS39-204ENST00000561818 CLEC17AQ6ZS10 378 aa9.01□□□□□ -0.97
VPS39-204ENST00000561818 ATG9AQ7Z3C6 839 aa9.01□□□□□ -0.97
VPS39-204ENST00000561818 DSCC1Q9BVC3 393 aa9.01□□□□□ -0.97
VPS39-204ENST00000561818 ALDH8A1Q9H2A2 487 aaPredicted RBP9.01□□□□□ -0.97
VPS39-204ENST00000561818 GNL3LQ9NVN8 582 aaKnown RBP9.01□□□□□ -0.97
VPS39-204ENST00000561818 PAG1Q9NWQ8 432 aa9.01□□□□□ -0.97
VPS39-204ENST00000561818 NARFQ9UHQ1 456 aa9.01□□□□□ -0.97
VPS39-204ENST00000561818 TBC1D2BQ9UPU7 963 aa9.01□□□□□ -0.97
VPS39-204ENST00000561818 NIP7Q9Y221 180 aaKnown RBP eCLIP9.01□□□□□ -0.97
VPS39-204ENST00000561818 KIF3AQ9Y496 699 aa9.01□□□□□ -0.97
VPS39-204ENST00000561818 AFF2P51816 1311 aa9.01□□□□□ -0.97
VPS39-204ENST00000561818 RPAP1Q9BWH6 1393 aaPredicted RBP9□□□□□ -0.97
VPS39-204ENST00000561818 SEMA3EO15041 775 aa9□□□□□ -0.97
VPS39-204ENST00000561818 PDE8BO95263 885 aa9□□□□□ -0.97
VPS39-204ENST00000561818 PIP4K2AP48426 406 aaPredicted RBP9□□□□□ -0.97
VPS39-204ENST00000561818 NEK4P51957 841 aa9□□□□□ -0.97
VPS39-204ENST00000561818 TPTE2Q6XPS3 522 aa9□□□□□ -0.97
VPS39-204ENST00000561818 MAP4K1Q92918 833 aa9□□□□□ -0.97
VPS39-204ENST00000561818 FAM89AQ96GI7 184 aa9□□□□□ -0.97
VPS39-204ENST00000561818 ACSBG1Q96GR2 724 aa9□□□□□ -0.97
VPS39-204ENST00000561818 NEUROD6Q96NK8 337 aa9□□□□□ -0.97
VPS39-204ENST00000561818 SLC4A9Q96Q91 983 aa9□□□□□ -0.97
VPS39-204ENST00000561818 LSG1Q9H089 658 aaKnown RBP9□□□□□ -0.97
VPS39-204ENST00000561818 CCDC8Q9H0W5 538 aaPredicted RBP9□□□□□ -0.97
VPS39-204ENST00000561818 BOLA2Q9H3K6 86 aa9□□□□□ -0.97
VPS39-204ENST00000561818 CCNL1Q9UK58 526 aaPredicted RBP9□□□□□ -0.97
VPS39-204ENST00000561818 CYP46A1Q9Y6A2 500 aa9□□□□□ -0.97
VPS39-204ENST00000561818 BTAF1O14981 1849 aa8.99□□□□□ -0.97
VPS39-204ENST00000561818 PDCP20941 246 aa8.99□□□□□ -0.97
VPS39-204ENST00000561818 GTF2E1P29083 439 aaPredicted RBP8.99□□□□□ -0.97
VPS39-204ENST00000561818 RAB3GAP1Q15042 981 aa8.99□□□□□ -0.97
VPS39-204ENST00000561818 SF3B3Q15393 1217 aaKnown RBP8.99□□□□□ -0.97
VPS39-204ENST00000561818 NFKBIBQ15653 356 aa8.99□□□□□ -0.97
VPS39-204ENST00000561818 CSPP1Q1MSJ5 1256 aa8.99□□□□□ -0.97
VPS39-204ENST00000561818 SLC10A5Q5PT55 438 aa8.99□□□□□ -0.97
VPS39-204ENST00000561818 USPL1Q5W0Q7 1092 aa8.99□□□□□ -0.97
VPS39-204ENST00000561818 TMC4Q7Z404 712 aa8.99□□□□□ -0.97
VPS39-204ENST00000561818 CERS3Q8IU89 383 aa8.99□□□□□ -0.97
VPS39-204ENST00000561818 FLAD1Q8NFF5 587 aa8.99□□□□□ -0.97
VPS39-204ENST00000561818 SETDB2Q96T68 719 aa8.99□□□□□ -0.97
VPS39-204ENST00000561818 ANKRD2Q9GZV1 360 aa8.99□□□□□ -0.97
VPS39-204ENST00000561818 BCL11AQ9H165 835 aa8.99□□□□□ -0.97
VPS39-204ENST00000561818 LIMCH1Q9UPQ0 1083 aa8.99□□□□□ -0.97
VPS39-204ENST00000561818 RIPOR2Q9Y4F9 1068 aa8.99□□□□□ -0.97
VPS39-204ENST00000561818 LY75O60449 1722 aa8.99□□□□□ -0.97
VPS39-204ENST00000561818 PDS5AQ29RF7 1337 aaKnown RBP8.99□□□□□ -0.97
VPS39-204ENST00000561818 ARAP2Q8WZ64 1704 aa8.98□□□□□ -0.97
VPS39-204ENST00000561818 NTSR2O95665 410 aa8.98□□□□□ -0.97
VPS39-204ENST00000561818 GNAT2P19087 354 aa8.98□□□□□ -0.97
VPS39-204ENST00000561818 GPTP24298 496 aa8.98□□□□□ -0.97
VPS39-204ENST00000561818 ARID4AP29374 1257 aaPredicted RBP8.98□□□□□ -0.97
VPS39-204ENST00000561818 DDIT3P35638 169 aa8.98□□□□□ -0.97
VPS39-204ENST00000561818 ITPK1Q13572 414 aa8.98□□□□□ -0.97
VPS39-204ENST00000561818 CUL4AQ13619 759 aa8.98□□□□□ -0.97
VPS39-204ENST00000561818 HLFQ16534 295 aa8.98□□□□□ -0.97
VPS39-204ENST00000561818 TSHZ3Q63HK5 1081 aa8.98□□□□□ -0.97
VPS39-204ENST00000561818 ANKRD18AQ8IVF6 992 aa8.98□□□□□ -0.97
VPS39-204ENST00000561818 RGS22Q8NE09 1264 aa8.98□□□□□ -0.97
VPS39-204ENST00000561818 NLRP3Q96P20 1036 aa8.98□□□□□ -0.97
VPS39-204ENST00000561818 DBNDD2Q9BQY9 259 aa8.98□□□□□ -0.97
VPS39-204ENST00000561818 SLKQ9H2G2 1235 aaPredicted RBP8.98□□□□□ -0.97
VPS39-204ENST00000561818 ZMYM6O95789 1325 aa8.98□□□□□ -0.97
VPS39-204ENST00000561818 UBN2Q6ZU65 1347 aa8.98□□□□□ -0.97
VPS39-204ENST00000561818 COL24A1Q17RW2 1714 aa8.97□□□□□ -0.97
VPS39-204ENST00000561818 RNF113AO15541 343 aaKnown RBP8.97□□□□□ -0.97
VPS39-204ENST00000561818 HSPA1LP34931 641 aa8.97□□□□□ -0.97
VPS39-204ENST00000561818 RFC4P35249 363 aa8.97□□□□□ -0.97
VPS39-204ENST00000561818 MAP3K12Q12852 859 aa8.97□□□□□ -0.97
VPS39-204ENST00000561818 UBE4AQ14139 1066 aa8.97□□□□□ -0.97
VPS39-204ENST00000561818 NECTIN1Q15223 517 aa8.97□□□□□ -0.97
VPS39-204ENST00000561818 UBE3CQ15386 1083 aa8.97□□□□□ -0.97
VPS39-204ENST00000561818 CAVIN4Q5BKX8 364 aa8.97□□□□□ -0.97
VPS39-204ENST00000561818 BLOC1S2Q6QNY1 142 aa8.97□□□□□ -0.97
VPS39-204ENST00000561818 SEPT12Q8IYM1 358 aa8.97□□□□□ -0.97
VPS39-204ENST00000561818 APPBP2Q92624 585 aa8.97□□□□□ -0.97
VPS39-204ENST00000561818 XAGE2Q96GT9 111 aa8.97□□□□□ -0.97
VPS39-204ENST00000561818 DNAJC2Q99543 621 aaKnown RBP8.97□□□□□ -0.97
VPS39-204ENST00000561818 GREM2Q9H772 168 aa8.97□□□□□ -0.97
VPS39-204ENST00000561818 ZSWIM6Q9HCJ5 1215 aa8.97□□□□□ -0.97
VPS39-204ENST00000561818 BSDC1Q9NW68 430 aaPredicted RBP8.97□□□□□ -0.97
VPS39-204ENST00000561818 RBM8AQ9Y5S9 174 aaKnown RBP8.97□□□□□ -0.97
VPS39-204ENST00000561818 DUOX1Q9NRD9 1551 aa8.97□□□□□ -0.97
VPS39-204ENST00000561818 WDR19Q8NEZ3 1342 aa8.97□□□□□ -0.97
VPS39-204ENST00000561818 WDR33Q9C0J8 1336 aaKnown RBP8.97□□□□□ -0.97
VPS39-204ENST00000561818 GNPATO15228 680 aa8.96□□□□□ -0.98
VPS39-204ENST00000561818 NPHP1O15259 732 aa8.96□□□□□ -0.98
VPS39-204ENST00000561818 RBM6P78332 1123 aaKnown RBP8.96□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 82.9 ms