RNA–Protein interactions for RNA: ENST00000561258.1

VPS13C-210, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 3

Gene VPS13C, Length 614 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-210ENST00000561258 FOXO3O43524 673 aa8.48□□□□□ -1.05
VPS13C-210ENST00000561258 ALX3O95076 343 aa8.48□□□□□ -1.05
VPS13C-210ENST00000561258 NRLP54845 237 aa8.48□□□□□ -1.05
VPS13C-210ENST00000561258 CDCA8Q53HL2 280 aa8.48□□□□□ -1.05
VPS13C-210ENST00000561258 C11orf16Q9NQ32 467 aa8.48□□□□□ -1.05
VPS13C-210ENST00000561258 TLR7Q9NYK1 1049 aaKnown RBP8.48□□□□□ -1.05
VPS13C-210ENST00000561258 PRR23CQ6ZRP0 262 aa8.47□□□□□ -1.05
VPS13C-210ENST00000561258 RGL4Q8IZJ4 473 aa8.47□□□□□ -1.05
VPS13C-210ENST00000561258 CMTR1Q8N1G2 835 aaKnown RBP8.47□□□□□ -1.05
VPS13C-210ENST00000561258 PLD4Q96BZ4 506 aa8.47□□□□□ -1.05
VPS13C-210ENST00000561258 RNF112Q9ULX5 631 aa8.47□□□□□ -1.05
VPS13C-210ENST00000561258 XYLBO75191 536 aa8.46□□□□□ -1.06
VPS13C-210ENST00000561258 GDF6Q6KF10 455 aaPredicted RBP8.46□□□□□ -1.06
VPS13C-210ENST00000561258 LOC102724428A0A0B4J2F2 783 aa8.45□□□□□ -1.06
VPS13C-210ENST00000561258 MMP20O60882 483 aa8.45□□□□□ -1.06
VPS13C-210ENST00000561258 EGFRP00533 1210 aa8.45□□□□□ -1.06
VPS13C-210ENST00000561258 ARID4AP29374 1257 aaPredicted RBP8.45□□□□□ -1.06
VPS13C-210ENST00000561258 SIK1P57059 783 aa8.45□□□□□ -1.06
VPS13C-210ENST00000561258 TREML1Q86YW5 311 aa8.45□□□□□ -1.06
VPS13C-210ENST00000561258 FOXD4L4Q8WXT5 416 aaPredicted RBP8.45□□□□□ -1.06
VPS13C-210ENST00000561258 NSUN5Q96P11 429 aaKnown RBP8.45□□□□□ -1.06
VPS13C-210ENST00000561258 AKTIPQ9H8T0 292 aa8.45□□□□□ -1.06
VPS13C-210ENST00000561258 IVNS1ABPQ9Y6Y0 642 aa8.45□□□□□ -1.06
VPS13C-210ENST00000561258 ELOAQ14241 798 aaKnown RBP8.44□□□□□ -1.06
VPS13C-210ENST00000561258 LCE3BQ5TA77 95 aa8.44□□□□□ -1.06
VPS13C-210ENST00000561258 DZIP1LQ8IYY4 767 aaKnown RBP8.44□□□□□ -1.06
VPS13C-210ENST00000561258 IL22RA1Q8N6P7 574 aa8.44□□□□□ -1.06
VPS13C-210ENST00000561258 KCNMB2Q9Y691 235 aa8.44□□□□□ -1.06
VPS13C-210ENST00000561258 PSAPP07602 524 aa8.43□□□□□ -1.06
VPS13C-210ENST00000561258 COX20Q5RI15 118 aa8.43□□□□□ -1.06
VPS13C-210ENST00000561258 SND1Q7KZF4 910 aaKnown RBP eCLIP8.43□□□□□ -1.06
VPS13C-210ENST00000561258 F8W735 103 aaPredicted RBP8.42□□□□□ -1.06
VPS13C-210ENST00000561258 GHRHP01286 108 aa8.42□□□□□ -1.06
VPS13C-210ENST00000561258 SETDB1Q15047 1291 aa8.42□□□□□ -1.06
VPS13C-210ENST00000561258 FAM200AQ8TCP9 573 aa8.42□□□□□ -1.06
VPS13C-210ENST00000561258 MRPL18Q9H0U6 180 aaKnown RBP8.42□□□□□ -1.06
VPS13C-210ENST00000561258 ZMIZ1Q9ULJ6 1067 aa8.42□□□□□ -1.06
VPS13C-210ENST00000561258 FSTP19883 344 aa8.41□□□□□ -1.06
VPS13C-210ENST00000561258 FKBP5Q13451 457 aaPredicted RBP8.41□□□□□ -1.06
VPS13C-210ENST00000561258 AGGF1Q8N302 714 aaeCLIP8.41□□□□□ -1.06
VPS13C-210ENST00000561258 TMEM130Q8N3G9 435 aa8.41□□□□□ -1.06
VPS13C-210ENST00000561258 TRIM33Q9UPN9 1127 aa8.41□□□□□ -1.06
VPS13C-210ENST00000561258 GNEQ9Y223 722 aaKnown RBP8.41□□□□□ -1.06
VPS13C-210ENST00000561258 ZNF428Q96B54 188 aa8.4□□□□□ -1.06
VPS13C-210ENST00000561258 PRIMPOLQ96LW4 560 aa8.4□□□□□ -1.06
VPS13C-210ENST00000561258 UTP3Q9NQZ2 479 aaKnown RBP eCLIP8.4□□□□□ -1.06
VPS13C-210ENST00000561258 PCMTD2Q9NV79 361 aa8.4□□□□□ -1.06
VPS13C-210ENST00000561258 SSTR4P31391 388 aa8.39□□□□□ -1.07
VPS13C-210ENST00000561258 CCDC27Q2M243 656 aa8.39□□□□□ -1.07
VPS13C-210ENST00000561258 TMEM164Q5U3C3 297 aa8.39□□□□□ -1.07
VPS13C-210ENST00000561258 B4GALNT3Q6L9W6 998 aa8.39□□□□□ -1.07
VPS13C-210ENST00000561258 STK32AQ8WU08 396 aa8.39□□□□□ -1.07
VPS13C-210ENST00000561258 SOX18P35713 384 aa8.38□□□□□ -1.07
VPS13C-210ENST00000561258 RBM25P49756 843 aaKnown RBP8.38□□□□□ -1.07
VPS13C-210ENST00000561258 TRIP4Q15650 581 aaPredicted RBP8.38□□□□□ -1.07
VPS13C-210ENST00000561258 FAM26DQ5JW98 314 aa8.38□□□□□ -1.07
VPS13C-210ENST00000561258 ETFBKMTQ8IXQ9 262 aa8.38□□□□□ -1.07
VPS13C-210ENST00000561258 SAP130Q9H0E3 1048 aa8.38□□□□□ -1.07
VPS13C-210ENST00000561258 RBSNQ9H1K0 784 aa8.38□□□□□ -1.07
VPS13C-210ENST00000561258 HOXD8P13378 290 aaPredicted RBP8.37□□□□□ -1.07
VPS13C-210ENST00000561258 GLB1P16278 677 aa8.37□□□□□ -1.07
VPS13C-210ENST00000561258 NOVA2Q9UNW9 492 aaKnown RBP8.37□□□□□ -1.07
VPS13C-210ENST00000561258 PRMT3O60678 531 aa8.36□□□□□ -1.07
VPS13C-210ENST00000561258 Q6ZS46 218 aa8.36□□□□□ -1.07
VPS13C-210ENST00000561258 NLRP13Q86W25 1043 aa8.36□□□□□ -1.07
VPS13C-210ENST00000561258 GALNT11Q8NCW6 608 aa8.36□□□□□ -1.07
VPS13C-210ENST00000561258 SRA1Q9HD15 236 aaKnown RBP8.36□□□□□ -1.07
VPS13C-210ENST00000561258 COL13A1Q5TAT6 717 aaPredicted RBP8.35□□□□□ -1.07
VPS13C-210ENST00000561258 MCTP1Q6DN14 999 aa8.35□□□□□ -1.07
VPS13C-210ENST00000561258 PHLDB3Q6NSJ2 640 aa8.35□□□□□ -1.07
VPS13C-210ENST00000561258 ZC3HAV1Q7Z2W4 902 aaKnown RBP8.35□□□□□ -1.07
VPS13C-210ENST00000561258 KRTAP19-1Q8IUB9 90 aa8.35□□□□□ -1.07
VPS13C-210ENST00000561258 MAP4K3Q8IVH8 894 aa8.35□□□□□ -1.07
VPS13C-210ENST00000561258 UBL7Q96S82 380 aaPredicted RBP8.35□□□□□ -1.07
VPS13C-210ENST00000561258 RAXQ9Y2V3 346 aa8.35□□□□□ -1.07
VPS13C-210ENST00000561258 LINC01387J3KSC0 135 aa8.34□□□□□ -1.07
VPS13C-210ENST00000561258 WISP1O95388 367 aa8.34□□□□□ -1.07
VPS13C-210ENST00000561258 TXNDC11Q6PKC3 985 aa8.34□□□□□ -1.07
VPS13C-210ENST00000561258 SLC51AQ86UW1 340 aa8.34□□□□□ -1.07
VPS13C-210ENST00000561258 TXNDC2Q86VQ3 553 aa8.34□□□□□ -1.07
VPS13C-210ENST00000561258 AMOTL2Q9Y2J4 779 aa8.34□□□□□ -1.07
VPS13C-210ENST00000561258 PPME1Q9Y570 386 aa8.34□□□□□ -1.07
VPS13C-210ENST00000561258 UBAP1LF5GYI3 381 aa8.33□□□□□ -1.08
VPS13C-210ENST00000561258 MED26O95402 600 aa8.33□□□□□ -1.08
VPS13C-210ENST00000561258 BRD2P25440 801 aaKnown RBP8.33□□□□□ -1.08
VPS13C-210ENST00000561258 CD97P48960 835 aa8.33□□□□□ -1.08
VPS13C-210ENST00000561258 ATP11AP98196 1134 aa8.33□□□□□ -1.08
VPS13C-210ENST00000561258 ADAMTSL4Q6UY14 1074 aa8.33□□□□□ -1.08
VPS13C-210ENST00000561258 CAPN12Q6ZSI9 719 aa8.33□□□□□ -1.08
VPS13C-210ENST00000561258 LACRTQ9GZZ8 138 aa8.33□□□□□ -1.08
VPS13C-210ENST00000561258 KCNK4Q9NYG8 393 aa8.33□□□□□ -1.08
VPS13C-210ENST00000561258 CDC25BP30305 580 aa8.32□□□□□ -1.08
VPS13C-210ENST00000561258 OCLNQ16625 522 aa8.32□□□□□ -1.08
VPS13C-210ENST00000561258 C16orf46Q6P387 395 aa8.32□□□□□ -1.08
VPS13C-210ENST00000561258 OR13H1Q8NG92 308 aa8.32□□□□□ -1.08
VPS13C-210ENST00000561258 MUC3BQ9H195 1237 aa8.32□□□□□ -1.08
VPS13C-210ENST00000561258 SLAIN2Q9P270 581 aa8.32□□□□□ -1.08
VPS13C-210ENST00000561258 TNFRSF10BO14763 440 aa8.31□□□□□ -1.08
VPS13C-210ENST00000561258 PTCD1O75127 700 aaKnown RBP8.31□□□□□ -1.08
VPS13C-210ENST00000561258 TGFB1P01137 390 aa8.31□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 83.6 ms