RNA–Protein interactions for RNA: ENST00000560829.5

SNX1-211, Transcript of sorting nexin 1, humanhuman

TSL 5 BASIC

Gene SNX1, Length 1,869 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-211ENST00000560829 AMIGO3Q86WK7 504 aa15.59■□□□□ 0.09
SNX1-211ENST00000560829 ZNF512BQ96KM6 892 aaPredicted RBP15.59■□□□□ 0.09
SNX1-211ENST00000560829 DNAJC2Q99543 621 aaKnown RBP15.59■□□□□ 0.09
SNX1-211ENST00000560829 NYXQ9GZU5 481 aa15.59■□□□□ 0.09
SNX1-211ENST00000560829 DDX60Q8IY21 1712 aaKnown RBP15.59■□□□□ 0.09
SNX1-211ENST00000560829 IFIT1P09914 478 aaKnown RBP15.59■□□□□ 0.09
SNX1-211ENST00000560829 KCNB2Q92953 911 aa15.59■□□□□ 0.09
SNX1-211ENST00000560829 PAG1Q9NWQ8 432 aa15.59■□□□□ 0.09
SNX1-211ENST00000560829 SRP68Q9UHB9 627 aaKnown RBP15.59■□□□□ 0.09
SNX1-211ENST00000560829 CCDC171Q6TFL3 1326 aa15.58■□□□□ 0.08
SNX1-211ENST00000560829 A0A0D9SFI3 127 aa15.58■□□□□ 0.08
SNX1-211ENST00000560829 ADORA1P30542 326 aa15.58■□□□□ 0.08
SNX1-211ENST00000560829 DDIT3P35638 169 aa15.58■□□□□ 0.08
SNX1-211ENST00000560829 ERFEQ4G0M1 354 aa15.58■□□□□ 0.08
SNX1-211ENST00000560829 SMIM5Q71RC9 77 aa15.58■□□□□ 0.08
SNX1-211ENST00000560829 SLKQ9H2G2 1235 aaPredicted RBP15.58■□□□□ 0.08
SNX1-211ENST00000560829 TAF1LQ8IZX4 1826 aa15.58■□□□□ 0.08
SNX1-211ENST00000560829 FGFR2P21802 821 aa15.57■□□□□ 0.08
SNX1-211ENST00000560829 HMGB2P26583 209 aaKnown RBP15.57■□□□□ 0.08
SNX1-211ENST00000560829 TRAPPC3LQ5T215 181 aa15.57■□□□□ 0.08
SNX1-211ENST00000560829 MAP4K1Q92918 833 aa15.57■□□□□ 0.08
SNX1-211ENST00000560829 SETDB2Q96T68 719 aa15.57■□□□□ 0.08
SNX1-211ENST00000560829 SEC31BQ9NQW1 1179 aa15.57■□□□□ 0.08
SNX1-211ENST00000560829 NDUFB9Q9Y6M9 179 aa15.57■□□□□ 0.08
SNX1-211ENST00000560829 SPEF2Q9C093 1822 aa15.57■□□□□ 0.08
SNX1-211ENST00000560829 PTH1RQ03431 593 aa15.57■□□□□ 0.08
SNX1-211ENST00000560829 PUM3Q15397 648 aaKnown RBP15.57■□□□□ 0.08
SNX1-211ENST00000560829 GORABQ5T7V8 394 aa15.57■□□□□ 0.08
SNX1-211ENST00000560829 DDX46Q7L014 1031 aaKnown RBP15.57■□□□□ 0.08
SNX1-211ENST00000560829 COL24A1Q17RW2 1714 aa15.56■□□□□ 0.08
SNX1-211ENST00000560829 GOLIM4O00461 696 aa15.56■□□□□ 0.08
SNX1-211ENST00000560829 RFC4P35249 363 aa15.56■□□□□ 0.08
SNX1-211ENST00000560829 IGHMBP2P38935 993 aaKnown RBP15.56■□□□□ 0.08
SNX1-211ENST00000560829 MCM2P49736 904 aa15.56■□□□□ 0.08
SNX1-211ENST00000560829 TTC39AQ5SRH9 613 aa15.56■□□□□ 0.08
SNX1-211ENST00000560829 LPIN2Q92539 896 aa15.56■□□□□ 0.08
SNX1-211ENST00000560829 CDC5LQ99459 802 aaKnown RBP15.56■□□□□ 0.08
SNX1-211ENST00000560829 MPHOSPH8Q99549 860 aa15.56■□□□□ 0.08
SNX1-211ENST00000560829 SNX14Q9Y5W7 946 aa15.56■□□□□ 0.08
SNX1-211ENST00000560829 TRIM37O94972 964 aa15.55■□□□□ 0.08
SNX1-211ENST00000560829 NECTIN1Q15223 517 aa15.55■□□□□ 0.08
SNX1-211ENST00000560829 CHMP5Q9NZZ3 219 aa15.55■□□□□ 0.08
SNX1-211ENST00000560829 NEK4P51957 841 aa15.54■□□□□ 0.08
SNX1-211ENST00000560829 BICDL1Q6ZP65 573 aa15.54■□□□□ 0.08
SNX1-211ENST00000560829 CIZ1Q9ULV3 898 aaPredicted RBP15.54■□□□□ 0.08
SNX1-211ENST00000560829 BRWD3Q6RI45 1802 aa15.54■□□□□ 0.08
SNX1-211ENST00000560829 TAF5LO75529 589 aa15.54■□□□□ 0.08
SNX1-211ENST00000560829 MCMDC2Q4G0Z9 681 aa15.54■□□□□ 0.08
SNX1-211ENST00000560829 TPTE2Q6XPS3 522 aa15.54■□□□□ 0.08
SNX1-211ENST00000560829 C3orf67Q6ZVT6 689 aa15.54■□□□□ 0.08
SNX1-211ENST00000560829 ZNF589Q86UQ0 364 aaPredicted RBP15.54■□□□□ 0.08
SNX1-211ENST00000560829 NBPF5PQ86XG9 351 aaPredicted RBP15.54■□□□□ 0.08
SNX1-211ENST00000560829 RASEFQ8IZ41 740 aa15.54■□□□□ 0.08
SNX1-211ENST00000560829 HELLSQ9NRZ9 838 aa15.54■□□□□ 0.08
SNX1-211ENST00000560829 SSFA2P28290 1259 aa15.53■□□□□ 0.08
SNX1-211ENST00000560829 ARID4AP29374 1257 aaPredicted RBP15.53■□□□□ 0.08
SNX1-211ENST00000560829 LRRFIP1Q32MZ4 808 aaKnown RBP15.53■□□□□ 0.08
SNX1-211ENST00000560829 ZMYM1Q5SVZ6 1142 aa15.53■□□□□ 0.08
SNX1-211ENST00000560829 SPRYD3Q8NCJ5 442 aa15.53■□□□□ 0.08
SNX1-211ENST00000560829 TM6SF1Q9BZW5 370 aa15.53■□□□□ 0.08
SNX1-211ENST00000560829 RBM8AQ9Y5S9 174 aaKnown RBP15.53■□□□□ 0.08
SNX1-211ENST00000560829 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP15.52■□□□□ 0.08
SNX1-211ENST00000560829 SLC5A1P13866 664 aa15.52■□□□□ 0.08
SNX1-211ENST00000560829 GTF2E1P29083 439 aaPredicted RBP15.52■□□□□ 0.08
SNX1-211ENST00000560829 SCARF1Q14162 830 aa15.52■□□□□ 0.08
SNX1-211ENST00000560829 C4AP0C0L4 1744 aa15.52■□□□□ 0.08
SNX1-211ENST00000560829 CARMIL3Q8ND23 1372 aa15.52■□□□□ 0.07
SNX1-211ENST00000560829 RNF113AO15541 343 aaKnown RBP15.52■□□□□ 0.07
SNX1-211ENST00000560829 PHF14O94880 888 aa15.52■□□□□ 0.07
SNX1-211ENST00000560829 ZFYP08048 801 aaPredicted RBP15.52■□□□□ 0.07
SNX1-211ENST00000560829 UQCRFS1P1P0C7P4 283 aa15.52■□□□□ 0.07
SNX1-211ENST00000560829 NFKBIBQ15653 356 aa15.52■□□□□ 0.07
SNX1-211ENST00000560829 CCDC102BQ68D86 513 aa15.52■□□□□ 0.07
SNX1-211ENST00000560829 NLRP3Q96P20 1036 aa15.52■□□□□ 0.07
SNX1-211ENST00000560829 PLSCR1O15162 318 aa15.51■□□□□ 0.07
SNX1-211ENST00000560829 MCAMP43121 646 aa15.51■□□□□ 0.07
SNX1-211ENST00000560829 FKBP4Q02790 459 aaKnown RBP eCLIP15.51■□□□□ 0.07
SNX1-211ENST00000560829 TXNRD1Q16881 649 aa15.51■□□□□ 0.07
SNX1-211ENST00000560829 CREB3L3Q68CJ9 461 aa15.51■□□□□ 0.07
SNX1-211ENST00000560829 PRPF40BQ6NWY9 871 aaKnown RBP15.51■□□□□ 0.07
SNX1-211ENST00000560829 ANKRD18AQ8IVF6 992 aa15.51■□□□□ 0.07
SNX1-211ENST00000560829 PROM2Q8N271 834 aa15.51■□□□□ 0.07
SNX1-211ENST00000560829 BSDC1Q9NW68 430 aaPredicted RBP15.51■□□□□ 0.07
SNX1-211ENST00000560829 ZKSCAN1P17029 563 aaPredicted RBP15.5■□□□□ 0.07
SNX1-211ENST00000560829 ZAP70P43403 619 aa15.5■□□□□ 0.07
SNX1-211ENST00000560829 CHRNDQ07001 517 aa15.5■□□□□ 0.07
SNX1-211ENST00000560829 NBR1Q14596 966 aa15.5■□□□□ 0.07
SNX1-211ENST00000560829 NFIXQ14938 502 aa15.5■□□□□ 0.07
SNX1-211ENST00000560829 TSGA10IPQ3SY00 556 aa15.5■□□□□ 0.07
SNX1-211ENST00000560829 HELBQ8NG08 1087 aaPredicted RBP15.5■□□□□ 0.07
SNX1-211ENST00000560829 HMG20BQ9P0W2 317 aa15.5■□□□□ 0.07
SNX1-211ENST00000560829 ARAP2Q8WZ64 1704 aa15.5■□□□□ 0.07
SNX1-211ENST00000560829 CHGBP05060 677 aa15.5■□□□□ 0.07
SNX1-211ENST00000560829 HSP90AA1P07900 732 aaKnown RBP15.5■□□□□ 0.07
SNX1-211ENST00000560829 RXRBP28702 533 aa15.5■□□□□ 0.07
SNX1-211ENST00000560829 RNF20Q5VTR2 975 aa15.5■□□□□ 0.07
SNX1-211ENST00000560829 TTC14Q96N46 770 aa15.5■□□□□ 0.07
SNX1-211ENST00000560829 SEC62Q99442 399 aaKnown RBP15.5■□□□□ 0.07
SNX1-211ENST00000560829 UPF3BQ9BZI7 483 aaKnown RBP15.5■□□□□ 0.07
SNX1-211ENST00000560829 SLC27A2O14975 620 aa15.49■□□□□ 0.07
Retrieved 100 of 20,778 RNA–protein pairs in 175.8 ms