RNA–Protein interactions for RNA: ENST00000560447.1

RTF1-206, Transcript of RTF1 homolog, Paf1/RNA polymerase II complex component, humanhuman

TSL 3

Gene RTF1, Length 551 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTF1-206ENST00000560447 MCTP1Q6DN14 999 aa11.63□□□□□ -0.55
RTF1-206ENST00000560447 LMBR1LQ6UX01 489 aa11.63□□□□□ -0.55
RTF1-206ENST00000560447 KIF6Q6ZMV9 814 aa11.63□□□□□ -0.55
RTF1-206ENST00000560447 RUFY3Q7L099 469 aa11.63□□□□□ -0.55
RTF1-206ENST00000560447 SIL1Q9H173 461 aa11.63□□□□□ -0.55
RTF1-206ENST00000560447 DBNLQ9UJU6 430 aaKnown RBP11.63□□□□□ -0.55
RTF1-206ENST00000560447 RBM8AQ9Y5S9 174 aaKnown RBP11.63□□□□□ -0.55
RTF1-206ENST00000560447 POTEMA6NI47 508 aa11.62□□□□□ -0.55
RTF1-206ENST00000560447 EYA2O00167 538 aa11.62□□□□□ -0.55
RTF1-206ENST00000560447 CASTP20810 708 aaKnown RBP11.62□□□□□ -0.55
RTF1-206ENST00000560447 PTH1RQ03431 593 aa11.62□□□□□ -0.55
RTF1-206ENST00000560447 TFCP2Q12800 502 aa11.62□□□□□ -0.55
RTF1-206ENST00000560447 TTLL7Q6ZT98 887 aa11.62□□□□□ -0.55
RTF1-206ENST00000560447 FAM43AQ8N2R8 423 aa11.62□□□□□ -0.55
RTF1-206ENST00000560447 TMEM87AQ8NBN3 555 aa11.62□□□□□ -0.55
RTF1-206ENST00000560447 SLAIN1Q8ND83 568 aa11.62□□□□□ -0.55
RTF1-206ENST00000560447 SYAP1Q96A49 352 aaPredicted RBP11.62□□□□□ -0.55
RTF1-206ENST00000560447 UPF3BQ9BZI7 483 aaKnown RBP11.62□□□□□ -0.55
RTF1-206ENST00000560447 BOLA2Q9H3K6 86 aa11.62□□□□□ -0.55
RTF1-206ENST00000560447 STRN4Q9NRL3 753 aa11.62□□□□□ -0.55
RTF1-206ENST00000560447 PDRG1Q9NUG6 133 aa11.62□□□□□ -0.55
RTF1-206ENST00000560447 AKAP2Q9Y2D5 859 aa11.62□□□□□ -0.55
RTF1-206ENST00000560447 THRAP3Q9Y2W1 955 aaKnown RBP11.62□□□□□ -0.55
RTF1-206ENST00000560447 NUP98P52948 1817 aa11.62□□□□□ -0.55
RTF1-206ENST00000560447 MYH7P12883 1935 aa11.62□□□□□ -0.55
RTF1-206ENST00000560447 DOT1LQ8TEK3 1739 aa11.61□□□□□ -0.55
RTF1-206ENST00000560447 ATP5J2-PTCD1G3V325 749 aa11.61□□□□□ -0.55
RTF1-206ENST00000560447 PTCD1O75127 700 aaKnown RBP11.61□□□□□ -0.55
RTF1-206ENST00000560447 A1BGP04217 495 aa11.61□□□□□ -0.55
RTF1-206ENST00000560447 KCNJ4P48050 445 aa11.61□□□□□ -0.55
RTF1-206ENST00000560447 CSPP1Q1MSJ5 1256 aa11.61□□□□□ -0.55
RTF1-206ENST00000560447 PRPF40BQ6NWY9 871 aaKnown RBP11.61□□□□□ -0.55
RTF1-206ENST00000560447 POTEGQ6S5H5 508 aa11.61□□□□□ -0.55
RTF1-206ENST00000560447 ATG9AQ7Z3C6 839 aa11.61□□□□□ -0.55
RTF1-206ENST00000560447 KBTBD3Q8NAB2 608 aa11.61□□□□□ -0.55
RTF1-206ENST00000560447 DDX54Q8TDD1 881 aaKnown RBP11.61□□□□□ -0.55
RTF1-206ENST00000560447 CHMP4CQ96CF2 233 aa11.61□□□□□ -0.55
RTF1-206ENST00000560447 JAKMIP1Q96N16 626 aaKnown RBP11.61□□□□□ -0.55
RTF1-206ENST00000560447 GZF1Q9H116 711 aaPredicted RBP11.61□□□□□ -0.55
RTF1-206ENST00000560447 HELLSQ9NRZ9 838 aa11.61□□□□□ -0.55
RTF1-206ENST00000560447 TLR7Q9NYK1 1049 aaKnown RBP11.61□□□□□ -0.55
RTF1-206ENST00000560447 MAP3K15Q6ZN16 1313 aa11.6□□□□□ -0.55
RTF1-206ENST00000560447 RIOK3O14730 519 aaKnown RBP11.6□□□□□ -0.55
RTF1-206ENST00000560447 SLC27A2O14975 620 aa11.6□□□□□ -0.55
RTF1-206ENST00000560447 HMGB1P09429 215 aaKnown RBP11.6□□□□□ -0.55
RTF1-206ENST00000560447 PDCP20941 246 aa11.6□□□□□ -0.55
RTF1-206ENST00000560447 BLOC1S2Q6QNY1 142 aa11.6□□□□□ -0.55
RTF1-206ENST00000560447 GIGYF2Q6Y7W6 1299 aaKnown RBP11.6□□□□□ -0.55
RTF1-206ENST00000560447 AK7Q96M32 723 aa11.6□□□□□ -0.55
RTF1-206ENST00000560447 BTG4Q9NY30 223 aa11.6□□□□□ -0.55
RTF1-206ENST00000560447 BRPF3Q9ULD4 1205 aa11.6□□□□□ -0.55
RTF1-206ENST00000560447 SMC3Q9UQE7 1217 aa11.6□□□□□ -0.55
RTF1-206ENST00000560447 ARAP2Q8WZ64 1704 aa11.6□□□□□ -0.55
RTF1-206ENST00000560447 LAMB2P55268 1798 aa11.59□□□□□ -0.55
RTF1-206ENST00000560447 A0A0D9SFI3 127 aa11.59□□□□□ -0.55
RTF1-206ENST00000560447 ERVV-1B6SEH8 477 aa11.59□□□□□ -0.55
RTF1-206ENST00000560447 TAF5LO75529 589 aa11.59□□□□□ -0.55
RTF1-206ENST00000560447 CSF1RP07333 972 aa11.59□□□□□ -0.55
RTF1-206ENST00000560447 ZSCAN22P10073 491 aaPredicted RBP11.59□□□□□ -0.55
RTF1-206ENST00000560447 NCLP19338 710 aaKnown RBP11.59□□□□□ -0.55
RTF1-206ENST00000560447 PKP1Q13835 747 aa11.59□□□□□ -0.55
RTF1-206ENST00000560447 MCMDC2Q4G0Z9 681 aa11.59□□□□□ -0.55
RTF1-206ENST00000560447 ZBTB38Q8NAP3 1195 aaPredicted RBP11.59□□□□□ -0.55
RTF1-206ENST00000560447 KLHDC4Q8TBB5 520 aa11.59□□□□□ -0.55
RTF1-206ENST00000560447 PIGBQ92521 554 aa11.59□□□□□ -0.55
RTF1-206ENST00000560447 FAM227BQ96M60 508 aa11.59□□□□□ -0.55
RTF1-206ENST00000560447 DBNDD2Q9BQY9 259 aa11.59□□□□□ -0.55
RTF1-206ENST00000560447 DSCC1Q9BVC3 393 aa11.59□□□□□ -0.55
RTF1-206ENST00000560447 PHLPP1O60346 1717 aa11.59□□□□□ -0.55
RTF1-206ENST00000560447 LAMA4Q16363 1823 aa11.58□□□□□ -0.56
RTF1-206ENST00000560447 LRP5O75197 1615 aa11.58□□□□□ -0.56
RTF1-206ENST00000560447 EXOC5O00471 708 aa11.58□□□□□ -0.56
RTF1-206ENST00000560447 STX6O43752 255 aa11.58□□□□□ -0.56
RTF1-206ENST00000560447 PRPF40AO75400 957 aaKnown RBP11.58□□□□□ -0.56
RTF1-206ENST00000560447 PHF14O94880 888 aa11.58□□□□□ -0.56
RTF1-206ENST00000560447 ZFYP08048 801 aaPredicted RBP11.58□□□□□ -0.56
RTF1-206ENST00000560447 RPS6KB1P23443 525 aa11.58□□□□□ -0.56
RTF1-206ENST00000560447 CCDC57Q2TAC2 916 aa11.58□□□□□ -0.56
RTF1-206ENST00000560447 FAM163AQ96GL9 167 aaPredicted RBP11.58□□□□□ -0.56
RTF1-206ENST00000560447 CEP126Q9P2H0 1117 aa11.58□□□□□ -0.56
RTF1-206ENST00000560447 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP11.58□□□□□ -0.56
RTF1-206ENST00000560447 TCHHQ07283 1943 aa11.57□□□□□ -0.56
RTF1-206ENST00000560447 HSP90B1P14625 803 aaKnown RBP11.57□□□□□ -0.56
RTF1-206ENST00000560447 IL6STP40189 918 aaPredicted RBP11.57□□□□□ -0.56
RTF1-206ENST00000560447 PIP4K2AP48426 406 aaPredicted RBP11.57□□□□□ -0.56
RTF1-206ENST00000560447 ANP32BQ92688 251 aaKnown RBP11.57□□□□□ -0.56
RTF1-206ENST00000560447 L3MBTL3Q96JM7 780 aaPredicted RBP11.57□□□□□ -0.56
RTF1-206ENST00000560447 ZNF512BQ96KM6 892 aaPredicted RBP11.57□□□□□ -0.56
RTF1-206ENST00000560447 ZBTB3Q9H5J0 574 aa11.57□□□□□ -0.56
RTF1-206ENST00000560447 PAG1Q9NWQ8 432 aa11.57□□□□□ -0.56
RTF1-206ENST00000560447 LTBP4Q8N2S1 1624 aa11.57□□□□□ -0.56
RTF1-206ENST00000560447 LETM1O95202 739 aaPredicted RBP11.56□□□□□ -0.56
RTF1-206ENST00000560447 F13A1P00488 732 aa11.56□□□□□ -0.56
RTF1-206ENST00000560447 CYP19A1P11511 503 aaPredicted RBP11.56□□□□□ -0.56
RTF1-206ENST00000560447 SYT1P21579 422 aa11.56□□□□□ -0.56
RTF1-206ENST00000560447 CCDC173Q0VFZ6 552 aa11.56□□□□□ -0.56
RTF1-206ENST00000560447 ADCK5Q3MIX3 580 aa11.56□□□□□ -0.56
RTF1-206ENST00000560447 ZSCAN23Q3MJ62 389 aa11.56□□□□□ -0.56
RTF1-206ENST00000560447 ZMYM1Q5SVZ6 1142 aa11.56□□□□□ -0.56
RTF1-206ENST00000560447 DNAJC10Q8IXB1 793 aa11.56□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 54.9 ms