RNA–Protein interactions for RNA: ENST00000560433.5

SNRPA1-211, Transcript of small nuclear ribonucleoprotein polypeptide A', humanhuman

TSL 2

Gene SNRPA1, Length 2,440 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNRPA1-211ENST00000560433 RIC1Q4ADV7 1423 aa13.17□□□□□ -0.3
SNRPA1-211ENST00000560433 IFIT1P09914 478 aaKnown RBP13.17□□□□□ -0.3
SNRPA1-211ENST00000560433 CCDC129Q6ZRS4 1044 aa13.17□□□□□ -0.3
SNRPA1-211ENST00000560433 ZNF589Q86UQ0 364 aaPredicted RBP13.17□□□□□ -0.3
SNRPA1-211ENST00000560433 MPHOSPH8Q99549 860 aa13.17□□□□□ -0.3
SNRPA1-211ENST00000560433 LSG1Q9H089 658 aaKnown RBP13.17□□□□□ -0.3
SNRPA1-211ENST00000560433 LY75O60449 1722 aa13.17□□□□□ -0.3
SNRPA1-211ENST00000560433 DDX60Q8IY21 1712 aaKnown RBP13.17□□□□□ -0.3
SNRPA1-211ENST00000560433 BCORQ6W2J9 1755 aa13.17□□□□□ -0.3
SNRPA1-211ENST00000560433 NPHP1O15259 732 aa13.17□□□□□ -0.3
SNRPA1-211ENST00000560433 ATP2B3Q16720 1220 aa13.17□□□□□ -0.3
SNRPA1-211ENST00000560433 NBPF5PQ86XG9 351 aaPredicted RBP13.17□□□□□ -0.3
SNRPA1-211ENST00000560433 HAUS7Q99871 368 aa13.17□□□□□ -0.3
SNRPA1-211ENST00000560433 UPF3BQ9BZI7 483 aaKnown RBP13.17□□□□□ -0.3
SNRPA1-211ENST00000560433 ABCC12Q96J65 1359 aa13.16□□□□□ -0.3
SNRPA1-211ENST00000560433 C4BP0C0L5 1744 aa13.16□□□□□ -0.3
SNRPA1-211ENST00000560433 CCDC152Q4G0S7 254 aa13.16□□□□□ -0.3
SNRPA1-211ENST00000560433 TTC39AQ5SRH9 613 aa13.16□□□□□ -0.3
SNRPA1-211ENST00000560433 GPR108Q9NPR9 543 aa13.16□□□□□ -0.3
SNRPA1-211ENST00000560433 ZNF831Q5JPB2 1677 aa13.16□□□□□ -0.3
SNRPA1-211ENST00000560433 KIAA1211Q6ZU35 1233 aa13.15□□□□□ -0.3
SNRPA1-211ENST00000560433 SLC51AQ86UW1 340 aa13.15□□□□□ -0.3
SNRPA1-211ENST00000560433 RASEFQ8IZ41 740 aa13.15□□□□□ -0.3
SNRPA1-211ENST00000560433 VGLL2Q8N8G2 317 aa13.15□□□□□ -0.3
SNRPA1-211ENST00000560433 PAG1Q9NWQ8 432 aa13.15□□□□□ -0.3
SNRPA1-211ENST00000560433 SPEF2Q9C093 1822 aa13.15□□□□□ -0.3
SNRPA1-211ENST00000560433 PDE8BO95263 885 aa13.15□□□□□ -0.3
SNRPA1-211ENST00000560433 RXRBP28702 533 aa13.15□□□□□ -0.3
SNRPA1-211ENST00000560433 NEK4P51957 841 aa13.15□□□□□ -0.3
SNRPA1-211ENST00000560433 RGS17Q9UGC6 210 aaPredicted RBP13.15□□□□□ -0.3
SNRPA1-211ENST00000560433 AKAP2Q9Y2D5 859 aa13.15□□□□□ -0.3
SNRPA1-211ENST00000560433 APBA3O96018 575 aa13.14□□□□□ -0.31
SNRPA1-211ENST00000560433 CPA1P15085 419 aa13.14□□□□□ -0.31
SNRPA1-211ENST00000560433 RABEP1Q15276 862 aa13.14□□□□□ -0.31
SNRPA1-211ENST00000560433 TXNRD1Q16881 649 aa13.14□□□□□ -0.31
SNRPA1-211ENST00000560433 CCDC158Q5M9N0 1113 aa13.14□□□□□ -0.31
SNRPA1-211ENST00000560433 ZAP70P43403 619 aa13.14□□□□□ -0.31
SNRPA1-211ENST00000560433 PRPF40BQ6NWY9 871 aaKnown RBP13.14□□□□□ -0.31
SNRPA1-211ENST00000560433 RUFY2Q8WXA3 655 aa13.14□□□□□ -0.31
SNRPA1-211ENST00000560433 RAD50Q92878 1312 aa13.14□□□□□ -0.31
SNRPA1-211ENST00000560433 CELF1Q92879 486 aaKnown RBP13.14□□□□□ -0.31
SNRPA1-211ENST00000560433 LARP6Q9BRS8 491 aaKnown RBP13.14□□□□□ -0.31
SNRPA1-211ENST00000560433 MCCP23508 829 aa13.13□□□□□ -0.31
SNRPA1-211ENST00000560433 HSPA4P34932 840 aa13.13□□□□□ -0.31
SNRPA1-211ENST00000560433 IGHMBP2P38935 993 aaKnown RBP13.13□□□□□ -0.31
SNRPA1-211ENST00000560433 NFIXQ14938 502 aa13.13□□□□□ -0.31
SNRPA1-211ENST00000560433 POTEAQ6S8J7 498 aa13.13□□□□□ -0.31
SNRPA1-211ENST00000560433 SNX21Q969T3 373 aa13.13□□□□□ -0.31
SNRPA1-211ENST00000560433 FBXO3Q9UK99 471 aa13.13□□□□□ -0.31
SNRPA1-211ENST00000560433 K7ELQ4 463 aaPredicted RBP13.13□□□□□ -0.31
SNRPA1-211ENST00000560433 HSP90AA1P07900 732 aaKnown RBP13.13□□□□□ -0.31
SNRPA1-211ENST00000560433 MCAMP43121 646 aa13.13□□□□□ -0.31
SNRPA1-211ENST00000560433 PHKA1P46020 1223 aa13.13□□□□□ -0.31
SNRPA1-211ENST00000560433 COL9A3Q14050 684 aaPredicted RBP13.13□□□□□ -0.31
SNRPA1-211ENST00000560433 EIF5BO60841 1220 aaKnown RBP13.12□□□□□ -0.31
SNRPA1-211ENST00000560433 KCNJ4P48050 445 aa13.12□□□□□ -0.31
SNRPA1-211ENST00000560433 KBTBD3Q8NAB2 608 aa13.12□□□□□ -0.31
SNRPA1-211ENST00000560433 IQSEC3Q9UPP2 1182 aaPredicted RBP13.12□□□□□ -0.31
SNRPA1-211ENST00000560433 TAF6LQ9Y6J9 622 aa13.12□□□□□ -0.31
SNRPA1-211ENST00000560433 C4AP0C0L4 1744 aa13.12□□□□□ -0.31
SNRPA1-211ENST00000560433 SCN7AQ01118 1682 aa13.12□□□□□ -0.31
SNRPA1-211ENST00000560433 CHRNDQ07001 517 aa13.12□□□□□ -0.31
SNRPA1-211ENST00000560433 ADCK5Q3MIX3 580 aa13.12□□□□□ -0.31
SNRPA1-211ENST00000560433 TPTE2Q6XPS3 522 aa13.12□□□□□ -0.31
SNRPA1-211ENST00000560433 SNX14Q9Y5W7 946 aa13.12□□□□□ -0.31
SNRPA1-211ENST00000560433 CCDC171Q6TFL3 1326 aa13.11□□□□□ -0.31
SNRPA1-211ENST00000560433 CCDC102BQ68D86 513 aa13.11□□□□□ -0.31
SNRPA1-211ENST00000560433 DTNBO60941 627 aa13.11□□□□□ -0.31
SNRPA1-211ENST00000560433 GYS1P13807 737 aa13.11□□□□□ -0.31
SNRPA1-211ENST00000560433 ZNF827Q17R98 1081 aa13.11□□□□□ -0.31
SNRPA1-211ENST00000560433 NLRP3Q96P20 1036 aa13.11□□□□□ -0.31
SNRPA1-211ENST00000560433 RBM8AQ9Y5S9 174 aaKnown RBP13.11□□□□□ -0.31
SNRPA1-211ENST00000560433 MROH5Q6ZUA9 1318 aa13.1□□□□□ -0.31
SNRPA1-211ENST00000560433 HIP1O00291 1037 aa13.1□□□□□ -0.31
SNRPA1-211ENST00000560433 BCAMP50895 628 aa13.1□□□□□ -0.31
SNRPA1-211ENST00000560433 PUM3Q15397 648 aaKnown RBP13.1□□□□□ -0.31
SNRPA1-211ENST00000560433 VPS53Q5VIR6 699 aa13.1□□□□□ -0.31
SNRPA1-211ENST00000560433 ANKRD18AQ8IVF6 992 aa13.1□□□□□ -0.31
SNRPA1-211ENST00000560433 TFCP2L1Q9NZI6 479 aa13.1□□□□□ -0.31
SNRPA1-211ENST00000560433 UTRNP46939 3433 aa13.1□□□□□ -0.31
SNRPA1-211ENST00000560433 ST18O60284 1047 aa13.1□□□□□ -0.31
SNRPA1-211ENST00000560433 SLC27A3Q5K4L6 730 aa13.1□□□□□ -0.31
SNRPA1-211ENST00000560433 NYXQ9GZU5 481 aa13.1□□□□□ -0.31
SNRPA1-211ENST00000560433 CASZ1Q86V15 1759 aa13.09□□□□□ -0.31
SNRPA1-211ENST00000560433 FGFR2P21802 821 aa13.09□□□□□ -0.31
SNRPA1-211ENST00000560433 SF3B3Q15393 1217 aaKnown RBP13.09□□□□□ -0.31
SNRPA1-211ENST00000560433 LPIN2Q92539 896 aa13.09□□□□□ -0.31
SNRPA1-211ENST00000560433 FRAT2O75474 233 aaPredicted RBP13.09□□□□□ -0.31
SNRPA1-211ENST00000560433 CYP2E1P05181 493 aaPredicted RBP13.09□□□□□ -0.31
SNRPA1-211ENST00000560433 NFKBIBQ15653 356 aa13.09□□□□□ -0.31
SNRPA1-211ENST00000560433 MAP4K1Q92918 833 aa13.09□□□□□ -0.31
SNRPA1-211ENST00000560433 CDC5LQ99459 802 aaKnown RBP13.09□□□□□ -0.31
SNRPA1-211ENST00000560433 UBR3Q6ZT12 1888 aa13.09□□□□□ -0.31
SNRPA1-211ENST00000560433 MED23Q9ULK4 1368 aa13.09□□□□□ -0.31
SNRPA1-211ENST00000560433 A0A0G2JLW4 131 aa13.08□□□□□ -0.32
SNRPA1-211ENST00000560433 HSP90B1P14625 803 aaKnown RBP13.08□□□□□ -0.32
SNRPA1-211ENST00000560433 CASTP20810 708 aaKnown RBP13.08□□□□□ -0.32
SNRPA1-211ENST00000560433 NECTIN1Q15223 517 aa13.08□□□□□ -0.32
SNRPA1-211ENST00000560433 WASHC4Q2M389 1173 aa13.08□□□□□ -0.32
SNRPA1-211ENST00000560433 MCMDC2Q4G0Z9 681 aa13.08□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 67.2 ms