RNA–Protein interactions for RNA: ENST00000560424.1

SMAD3-215, Transcript of SMAD family member 3, humanhuman

TSL 3

Gene SMAD3, Length 775 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD3-215ENST00000560424 TCIRG1Q13488 830 aa12.18□□□□□ -0.46
SMAD3-215ENST00000560424 MIER1Q8N108 512 aa12.18□□□□□ -0.46
SMAD3-215ENST00000560424 ZC3H12CQ9C0D7 883 aaKnown RBP12.18□□□□□ -0.46
SMAD3-215ENST00000560424 KDM3BQ7LBC6 1761 aa12.18□□□□□ -0.46
SMAD3-215ENST00000560424 ASTN2O75129 1339 aaPredicted RBP12.17□□□□□ -0.46
SMAD3-215ENST00000560424 UBE2Q2LH0YL09 131 aa12.17□□□□□ -0.46
SMAD3-215ENST00000560424 EIF2S2P20042 333 aaKnown RBP12.17□□□□□ -0.46
SMAD3-215ENST00000560424 TM4SF4P48230 202 aa12.17□□□□□ -0.46
SMAD3-215ENST00000560424 NLRP10Q86W26 655 aa12.17□□□□□ -0.46
SMAD3-215ENST00000560424 THUMPD2Q9BTF0 503 aaKnown RBP12.17□□□□□ -0.46
SMAD3-215ENST00000560424 TRIM17Q9Y577 477 aa12.17□□□□□ -0.46
SMAD3-215ENST00000560424 RTL9Q8NET4 1388 aa12.17□□□□□ -0.46
SMAD3-215ENST00000560424 ANP32CO43423 234 aa12.16□□□□□ -0.46
SMAD3-215ENST00000560424 ALDH1A1P00352 501 aa12.16□□□□□ -0.46
SMAD3-215ENST00000560424 VIL1P09327 827 aaKnown RBP12.16□□□□□ -0.46
SMAD3-215ENST00000560424 GPSM2P81274 684 aa12.16□□□□□ -0.46
SMAD3-215ENST00000560424 AIMP1Q12904 312 aaKnown RBP12.16□□□□□ -0.46
SMAD3-215ENST00000560424 MOB2Q70IA6 237 aa12.16□□□□□ -0.46
SMAD3-215ENST00000560424 KCNQ5Q9NR82 932 aa12.16□□□□□ -0.46
SMAD3-215ENST00000560424 POLLQ9UGP5 575 aa12.16□□□□□ -0.46
SMAD3-215ENST00000560424 LRRC37AA6NMS7 1700 aa12.16□□□□□ -0.46
SMAD3-215ENST00000560424 PITPNM2Q9BZ72 1349 aa12.15□□□□□ -0.46
SMAD3-215ENST00000560424 TAF1P21675 1872 aa12.15□□□□□ -0.46
SMAD3-215ENST00000560424 POTEFA5A3E0 1075 aa12.15□□□□□ -0.46
SMAD3-215ENST00000560424 CCER2I3L3R5 266 aa12.15□□□□□ -0.46
SMAD3-215ENST00000560424 AGBL3Q8NEM8 1001 aa12.15□□□□□ -0.46
SMAD3-215ENST00000560424 MYOZ2Q9NPC6 264 aa12.15□□□□□ -0.46
SMAD3-215ENST00000560424 USP17L8P0C7I0 530 aa12.14□□□□□ -0.47
SMAD3-215ENST00000560424 RSBN1LQ6PCB5 846 aaPredicted RBP12.14□□□□□ -0.47
SMAD3-215ENST00000560424 ARMC9Q7Z3E5 817 aa12.14□□□□□ -0.47
SMAD3-215ENST00000560424 TBC1D16Q8TBP0 767 aa12.14□□□□□ -0.47
SMAD3-215ENST00000560424 CELF1Q92879 486 aaKnown RBP12.14□□□□□ -0.47
SMAD3-215ENST00000560424 TMEM106CQ9BVX2 250 aa12.14□□□□□ -0.47
SMAD3-215ENST00000560424 ANKIB1Q9P2G1 1089 aa12.14□□□□□ -0.47
SMAD3-215ENST00000560424 TSPYL4Q9UJ04 414 aa12.14□□□□□ -0.47
SMAD3-215ENST00000560424 UFL1O94874 794 aa12.13□□□□□ -0.47
SMAD3-215ENST00000560424 ANXA1P04083 346 aa12.13□□□□□ -0.47
SMAD3-215ENST00000560424 ZNF280AP59817 542 aaPredicted RBP12.13□□□□□ -0.47
SMAD3-215ENST00000560424 COPS6Q7L5N1 327 aa12.13□□□□□ -0.47
SMAD3-215ENST00000560424 NECTIN2Q92692 538 aa12.13□□□□□ -0.47
SMAD3-215ENST00000560424 ZNF428Q96B54 188 aa12.13□□□□□ -0.47
SMAD3-215ENST00000560424 CFHR5Q9BXR6 569 aa12.13□□□□□ -0.47
SMAD3-215ENST00000560424 SCAF8Q9UPN6 1271 aaKnown RBP12.13□□□□□ -0.47
SMAD3-215ENST00000560424 PRKG1Q13976 671 aa12.12□□□□□ -0.47
SMAD3-215ENST00000560424 PRAMEF18Q5VWM3 479 aa12.12□□□□□ -0.47
SMAD3-215ENST00000560424 OTOP1Q7RTM1 612 aa12.12□□□□□ -0.47
SMAD3-215ENST00000560424 XAGE3Q8WTP9 111 aa12.12□□□□□ -0.47
SMAD3-215ENST00000560424 ERO1AQ96HE7 468 aa12.12□□□□□ -0.47
SMAD3-215ENST00000560424 ZBTB4Q9P1Z0 1013 aaPredicted RBP12.12□□□□□ -0.47
SMAD3-215ENST00000560424 GGA1Q9UJY5 639 aa12.12□□□□□ -0.47
SMAD3-215ENST00000560424 COLQQ9Y215 455 aaPredicted RBP12.12□□□□□ -0.47
SMAD3-215ENST00000560424 DLL1O00548 723 aa12.11□□□□□ -0.47
SMAD3-215ENST00000560424 SF3B3Q15393 1217 aaKnown RBP12.11□□□□□ -0.47
SMAD3-215ENST00000560424 OGFOD1Q8N543 542 aa12.11□□□□□ -0.47
SMAD3-215ENST00000560424 DLG5Q8TDM6 1919 aa12.11□□□□□ -0.47
SMAD3-215ENST00000560424 MAPK8IP3Q9UPT6 1336 aa12.11□□□□□ -0.47
SMAD3-215ENST00000560424 MANSC4A6NHS7 340 aaPredicted RBP12.1□□□□□ -0.47
SMAD3-215ENST00000560424 EN2P19622 333 aaPredicted RBP12.1□□□□□ -0.47
SMAD3-215ENST00000560424 INHBEP58166 350 aa12.1□□□□□ -0.47
SMAD3-215ENST00000560424 RPS8P62241 208 aaKnown RBP12.1□□□□□ -0.47
SMAD3-215ENST00000560424 PDIA6Q15084 440 aa12.1□□□□□ -0.47
SMAD3-215ENST00000560424 PROSER3Q2NL68 480 aa12.1□□□□□ -0.47
SMAD3-215ENST00000560424 OTUD7BQ6GQQ9 843 aa12.1□□□□□ -0.47
SMAD3-215ENST00000560424 FBXW7Q969H0 707 aa12.1□□□□□ -0.47
SMAD3-215ENST00000560424 FAM89AQ96GI7 184 aa12.1□□□□□ -0.47
SMAD3-215ENST00000560424 R3HDMLQ9H3Y0 253 aa12.1□□□□□ -0.47
SMAD3-215ENST00000560424 PRKRIP1Q9H875 184 aaPredicted RBP12.1□□□□□ -0.47
SMAD3-215ENST00000560424 SCN9AQ15858 1988 aa12.1□□□□□ -0.47
SMAD3-215ENST00000560424 USP17L3A6NCW0 530 aa12.09□□□□□ -0.47
SMAD3-215ENST00000560424 USP17L4A6NCW7 530 aa12.09□□□□□ -0.47
SMAD3-215ENST00000560424 HSP90B1P14625 803 aaKnown RBP12.09□□□□□ -0.47
SMAD3-215ENST00000560424 PTPN12Q05209 780 aaKnown RBP12.09□□□□□ -0.47
SMAD3-215ENST00000560424 RTL5Q5HYW3 569 aaPredicted RBP12.09□□□□□ -0.47
SMAD3-215ENST00000560424 USP17L1Q7RTZ2 530 aa12.09□□□□□ -0.47
SMAD3-215ENST00000560424 LRP10Q7Z4F1 713 aa12.09□□□□□ -0.47
SMAD3-215ENST00000560424 SLC17A8Q8NDX2 589 aa12.09□□□□□ -0.47
SMAD3-215ENST00000560424 PNNQ9H307 717 aaKnown RBP12.09□□□□□ -0.47
SMAD3-215ENST00000560424 EFCC1Q9HA90 598 aa12.09□□□□□ -0.47
SMAD3-215ENST00000560424 PODXL2Q9NZ53 605 aa12.09□□□□□ -0.47
SMAD3-215ENST00000560424 PTPN22Q9Y2R2 807 aa12.09□□□□□ -0.47
SMAD3-215ENST00000560424 RBBP6Q7Z6E9 1792 aaKnown RBP12.09□□□□□ -0.47
SMAD3-215ENST00000560424 MKI67P46013 3256 aaKnown RBP12.09□□□□□ -0.47
SMAD3-215ENST00000560424 ZNF609O15014 1411 aa12.09□□□□□ -0.47
SMAD3-215ENST00000560424 NFE2L2Q16236 605 aa12.08□□□□□ -0.48
SMAD3-215ENST00000560424 SLC4A8Q2Y0W8 1093 aa12.08□□□□□ -0.48
SMAD3-215ENST00000560424 NBPF9Q3BBW0 867 aa12.08□□□□□ -0.48
SMAD3-215ENST00000560424 SPRYD7Q5W111 196 aa12.08□□□□□ -0.48
SMAD3-215ENST00000560424 NBPF11Q86T75 865 aa12.08□□□□□ -0.48
SMAD3-215ENST00000560424 SLC10A4Q96EP9 437 aa12.08□□□□□ -0.48
SMAD3-215ENST00000560424 ANGEL1Q9UNK9 670 aaKnown RBP12.08□□□□□ -0.48
SMAD3-215ENST00000560424 IRS4O14654 1257 aaPredicted RBP12.07□□□□□ -0.48
SMAD3-215ENST00000560424 PPP2R1AP30153 589 aa12.07□□□□□ -0.48
SMAD3-215ENST00000560424 ARHGEF6Q15052 776 aa12.07□□□□□ -0.48
SMAD3-215ENST00000560424 PODNQ7Z5L7 613 aa12.07□□□□□ -0.48
SMAD3-215ENST00000560424 IFNL1Q8IU54 200 aa12.07□□□□□ -0.48
SMAD3-215ENST00000560424 APOBEC3FQ8IUX4 373 aaKnown RBP12.07□□□□□ -0.48
SMAD3-215ENST00000560424 CD99L2Q8TCZ2 262 aa12.07□□□□□ -0.48
SMAD3-215ENST00000560424 ARMC5Q96C12 935 aa12.07□□□□□ -0.48
SMAD3-215ENST00000560424 KIAA0100Q14667 2235 aaKnown RBP12.06□□□□□ -0.48
SMAD3-215ENST00000560424 ATP5J2-PTCD1G3V325 749 aa12.06□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 19 ms