RNA–Protein interactions for RNA: ENST00000559511.5

SPG11-217, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

APPRIS ALT2 TSL 2

Gene SPG11, Length 2,127 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-217ENST00000559511 PCCAP05165 728 aaPredicted RBP13.22□□□□□ -0.29
SPG11-217ENST00000559511 PSMA5P28066 241 aa13.22□□□□□ -0.29
SPG11-217ENST00000559511 GJB2P29033 226 aa13.22□□□□□ -0.29
SPG11-217ENST00000559511 NECAB1Q8N987 351 aa13.22□□□□□ -0.29
SPG11-217ENST00000559511 C8orf37Q96NL8 207 aa13.22□□□□□ -0.29
SPG11-217ENST00000559511 MBD3O95983 291 aa13.21□□□□□ -0.29
SPG11-217ENST00000559511 RPS6KB1P23443 525 aa13.21□□□□□ -0.29
SPG11-217ENST00000559511 IL6STP40189 918 aaPredicted RBP13.21□□□□□ -0.29
SPG11-217ENST00000559511 TSGA10IPQ3SY00 556 aa13.21□□□□□ -0.29
SPG11-217ENST00000559511 SLFNL1Q499Z3 407 aa13.21□□□□□ -0.29
SPG11-217ENST00000559511 BLOC1S2Q6QNY1 142 aa13.21□□□□□ -0.29
SPG11-217ENST00000559511 KBTBD3Q8NAB2 608 aa13.21□□□□□ -0.29
SPG11-217ENST00000559511 NGLY1Q96IV0 654 aa13.21□□□□□ -0.29
SPG11-217ENST00000559511 RRAGDQ9NQL2 400 aaPredicted RBP13.21□□□□□ -0.29
SPG11-217ENST00000559511 HMG20BQ9P0W2 317 aa13.21□□□□□ -0.29
SPG11-217ENST00000559511 ZNF831Q5JPB2 1677 aa13.21□□□□□ -0.3
SPG11-217ENST00000559511 PALLDQ8WX93 1383 aa13.21□□□□□ -0.3
SPG11-217ENST00000559511 GOLIM4O00461 696 aa13.21□□□□□ -0.3
SPG11-217ENST00000559511 GADD45BO75293 160 aaPredicted RBP13.21□□□□□ -0.3
SPG11-217ENST00000559511 CIAO1O76071 339 aa13.21□□□□□ -0.3
SPG11-217ENST00000559511 NASPP49321 788 aaPredicted RBP13.21□□□□□ -0.3
SPG11-217ENST00000559511 FAM98CQ17RN3 349 aaKnown RBP13.21□□□□□ -0.3
SPG11-217ENST00000559511 MCMDC2Q4G0Z9 681 aa13.21□□□□□ -0.3
SPG11-217ENST00000559511 ZBTB38Q8NAP3 1195 aaPredicted RBP13.21□□□□□ -0.3
SPG11-217ENST00000559511 FAM89AQ96GI7 184 aa13.21□□□□□ -0.3
SPG11-217ENST00000559511 SPEF2Q9C093 1822 aa13.2□□□□□ -0.3
SPG11-217ENST00000559511 A0A1B0GUL7 405 aa13.2□□□□□ -0.3
SPG11-217ENST00000559511 GPTP24298 496 aa13.2□□□□□ -0.3
SPG11-217ENST00000559511 TOB2Q14106 344 aaPredicted RBP13.2□□□□□ -0.3
SPG11-217ENST00000559511 VPS72Q15906 364 aa13.2□□□□□ -0.3
SPG11-217ENST00000559511 USP48Q86UV5 1035 aa13.2□□□□□ -0.3
SPG11-217ENST00000559511 NLRP10Q86W26 655 aa13.2□□□□□ -0.3
SPG11-217ENST00000559511 PAG1Q9NWQ8 432 aa13.2□□□□□ -0.3
SPG11-217ENST00000559511 SH3TC1Q8TE82 1336 aa13.2□□□□□ -0.3
SPG11-217ENST00000559511 SYCE3A1L190 88 aa13.19□□□□□ -0.3
SPG11-217ENST00000559511 F13A1P00488 732 aa13.19□□□□□ -0.3
SPG11-217ENST00000559511 ATP6V1AP38606 617 aa13.19□□□□□ -0.3
SPG11-217ENST00000559511 HSP90AB3PQ58FF7 597 aa13.19□□□□□ -0.3
SPG11-217ENST00000559511 INTS5Q6P9B9 1019 aaKnown RBP13.19□□□□□ -0.3
SPG11-217ENST00000559511 DZIP3Q86Y13 1208 aaKnown RBP13.19□□□□□ -0.3
SPG11-217ENST00000559511 SYNE4Q8N205 404 aa13.19□□□□□ -0.3
SPG11-217ENST00000559511 CCDC85AQ96PX6 553 aaPredicted RBP13.19□□□□□ -0.3
SPG11-217ENST00000559511 PLA2G12BQ9BX93 195 aa13.19□□□□□ -0.3
SPG11-217ENST00000559511 TBC1D2BQ9UPU7 963 aa13.19□□□□□ -0.3
SPG11-217ENST00000559511 CNPY2Q9Y2B0 182 aa13.19□□□□□ -0.3
SPG11-217ENST00000559511 LOC102724428A0A0B4J2F2 783 aa13.19□□□□□ -0.3
SPG11-217ENST00000559511 KCNQ2O43526 872 aa13.19□□□□□ -0.3
SPG11-217ENST00000559511 SIK1P57059 783 aa13.19□□□□□ -0.3
SPG11-217ENST00000559511 ITPK1Q13572 414 aa13.19□□□□□ -0.3
SPG11-217ENST00000559511 CCDC57Q2TAC2 916 aa13.19□□□□□ -0.3
SPG11-217ENST00000559511 TMEM87AQ8NBN3 555 aa13.19□□□□□ -0.3
SPG11-217ENST00000559511 RBSNQ9H1K0 784 aa13.19□□□□□ -0.3
SPG11-217ENST00000559511 ALDH8A1Q9H2A2 487 aaPredicted RBP13.19□□□□□ -0.3
SPG11-217ENST00000559511 MTMR6Q9Y217 621 aa13.19□□□□□ -0.3
SPG11-217ENST00000559511 CDHR2Q9BYE9 1310 aa13.19□□□□□ -0.3
SPG11-217ENST00000559511 ERVV-1B6SEH8 477 aa13.18□□□□□ -0.3
SPG11-217ENST00000559511 CRKLP46109 303 aaKnown RBP13.18□□□□□ -0.3
SPG11-217ENST00000559511 EIF5P55010 431 aaKnown RBP13.18□□□□□ -0.3
SPG11-217ENST00000559511 FNBP4Q8N3X1 1017 aaPredicted RBP13.18□□□□□ -0.3
SPG11-217ENST00000559511 CCDC87Q9NVE4 849 aa13.18□□□□□ -0.3
SPG11-217ENST00000559511 THSD7AQ9UPZ6 1657 aa13.18□□□□□ -0.3
SPG11-217ENST00000559511 CSF1RP07333 972 aa13.18□□□□□ -0.3
SPG11-217ENST00000559511 CYP21A2P08686 494 aa13.18□□□□□ -0.3
SPG11-217ENST00000559511 LRSAM1Q6UWE0 723 aa13.18□□□□□ -0.3
SPG11-217ENST00000559511 U3KPZ7 1027 aaPredicted RBP13.18□□□□□ -0.3
SPG11-217ENST00000559511 BCORQ6W2J9 1755 aa13.18□□□□□ -0.3
SPG11-217ENST00000559511 BTAF1O14981 1849 aa13.17□□□□□ -0.3
SPG11-217ENST00000559511 IFIT1P09914 478 aaKnown RBP13.17□□□□□ -0.3
SPG11-217ENST00000559511 ADORA1P30542 326 aa13.17□□□□□ -0.3
SPG11-217ENST00000559511 KRT32Q14532 448 aa13.17□□□□□ -0.3
SPG11-217ENST00000559511 ANKRD1Q15327 319 aa13.17□□□□□ -0.3
SPG11-217ENST00000559511 CEP126Q9P2H0 1117 aa13.17□□□□□ -0.3
SPG11-217ENST00000559511 MYH7P12883 1935 aa13.17□□□□□ -0.3
SPG11-217ENST00000559511 DDX60Q8IY21 1712 aaKnown RBP13.17□□□□□ -0.3
SPG11-217ENST00000559511 ZMYM1Q5SVZ6 1142 aa13.16□□□□□ -0.3
SPG11-217ENST00000559511 ZNF34Q8IZ26 560 aa13.16□□□□□ -0.3
SPG11-217ENST00000559511 NEK1Q96PY6 1258 aa13.16□□□□□ -0.3
SPG11-217ENST00000559511 HELLSQ9NRZ9 838 aa13.16□□□□□ -0.3
SPG11-217ENST00000559511 UBN2Q6ZU65 1347 aa13.16□□□□□ -0.3
SPG11-217ENST00000559511 CASZ1Q86V15 1759 aa13.16□□□□□ -0.3
SPG11-217ENST00000559511 RIC1Q4ADV7 1423 aa13.16□□□□□ -0.3
SPG11-217ENST00000559511 SPATA31A6Q5VVP1 1343 aa13.16□□□□□ -0.3
SPG11-217ENST00000559511 STOX1Q6ZVD7 989 aa13.16□□□□□ -0.3
SPG11-217ENST00000559511 SBF2Q86WG5 1849 aa13.15□□□□□ -0.3
SPG11-217ENST00000559511 LAMB2P55268 1798 aa13.15□□□□□ -0.3
SPG11-217ENST00000559511 VPS37CA5D8V6 355 aaPredicted RBP13.15□□□□□ -0.3
SPG11-217ENST00000559511 SMARCC1Q92922 1105 aaPredicted RBP13.15□□□□□ -0.3
SPG11-217ENST00000559511 XAGE2Q96GT9 111 aa13.15□□□□□ -0.3
SPG11-217ENST00000559511 PPP1R9BQ96SB3 815 aa13.15□□□□□ -0.3
SPG11-217ENST00000559511 FBXO3Q9UK99 471 aa13.15□□□□□ -0.3
SPG11-217ENST00000559511 AKAP11Q9UKA4 1901 aa13.15□□□□□ -0.3
SPG11-217ENST00000559511 MAST3O60307 1309 aa13.15□□□□□ -0.3
SPG11-217ENST00000559511 FIBPO43427 364 aa13.15□□□□□ -0.3
SPG11-217ENST00000559511 DNM1Q05193 864 aaKnown RBP13.15□□□□□ -0.3
SPG11-217ENST00000559511 CCDC173Q0VFZ6 552 aa13.15□□□□□ -0.3
SPG11-217ENST00000559511 STK3Q13188 491 aa13.15□□□□□ -0.3
SPG11-217ENST00000559511 IFIT5Q13325 482 aaKnown RBP13.15□□□□□ -0.3
SPG11-217ENST00000559511 TTLL11Q8NHH1 800 aa13.15□□□□□ -0.3
SPG11-217ENST00000559511 PPIL4Q8WUA2 492 aaKnown RBP eCLIP13.15□□□□□ -0.3
SPG11-217ENST00000559511 TRMT112Q9UI30 125 aaKnown RBP13.15□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 47.3 ms