RNA–Protein interactions for RNA: ENST00000559460.5

SMAD3-211, Transcript of SMAD family member 3, humanhuman

TSL 4

Gene SMAD3, Length 568 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD3-211ENST00000559460 AGBL3Q8NEM8 1001 aa12.86□□□□□ -0.35
SMAD3-211ENST00000559460 CD99L2Q8TCZ2 262 aa12.86□□□□□ -0.35
SMAD3-211ENST00000559460 DPF3Q92784 378 aa12.86□□□□□ -0.35
SMAD3-211ENST00000559460 R3HDMLQ9H3Y0 253 aa12.86□□□□□ -0.35
SMAD3-211ENST00000559460 MYOZ2Q9NPC6 264 aa12.86□□□□□ -0.35
SMAD3-211ENST00000559460 ZBTB4Q9P1Z0 1013 aaPredicted RBP12.86□□□□□ -0.35
SMAD3-211ENST00000559460 RBM27Q9P2N5 1060 aaKnown RBP12.86□□□□□ -0.35
SMAD3-211ENST00000559460 DUOX1Q9NRD9 1551 aa12.86□□□□□ -0.35
SMAD3-211ENST00000559460 TAF7Q15545 349 aaPredicted RBP12.85□□□□□ -0.35
SMAD3-211ENST00000559460 NECTIN2Q92692 538 aa12.85□□□□□ -0.35
SMAD3-211ENST00000559460 KCNQ5Q9NR82 932 aa12.85□□□□□ -0.35
SMAD3-211ENST00000559460 USP17L8P0C7I0 530 aa12.84□□□□□ -0.35
SMAD3-211ENST00000559460 ZNF280AP59817 542 aaPredicted RBP12.84□□□□□ -0.35
SMAD3-211ENST00000559460 EIF4G2P78344 907 aaKnown RBP eCLIP12.84□□□□□ -0.351e-6■■■■□ 21.9
SMAD3-211ENST00000559460 PRKG1Q13976 671 aa12.84□□□□□ -0.35
SMAD3-211ENST00000559460 HSP90AB3PQ58FF7 597 aa12.84□□□□□ -0.35
SMAD3-211ENST00000559460 AMER1Q5JTC6 1135 aaPredicted RBP12.84□□□□□ -0.35
SMAD3-211ENST00000559460 PRAMEF18Q5VWM3 479 aa12.84□□□□□ -0.35
SMAD3-211ENST00000559460 SPRYD7Q5W111 196 aa12.84□□□□□ -0.35
SMAD3-211ENST00000559460 RSBN1LQ6PCB5 846 aaPredicted RBP12.84□□□□□ -0.35
SMAD3-211ENST00000559460 IFNL1Q8IU54 200 aa12.84□□□□□ -0.35
SMAD3-211ENST00000559460 PNISRQ8TF01 805 aaKnown RBP12.84□□□□□ -0.35
SMAD3-211ENST00000559460 PHACTR3Q96KR7 559 aa12.84□□□□□ -0.35
SMAD3-211ENST00000559460 TRMT112Q9UI30 125 aaKnown RBP12.84□□□□□ -0.35
SMAD3-211ENST00000559460 ZNF609O15014 1411 aa12.84□□□□□ -0.35
SMAD3-211ENST00000559460 SH3TC1Q8TE82 1336 aa12.84□□□□□ -0.35
SMAD3-211ENST00000559460 ZNF333Q96JL9 665 aa12.83□□□□□ -0.36
SMAD3-211ENST00000559460 SCAF8Q9UPN6 1271 aaKnown RBP12.83□□□□□ -0.36
SMAD3-211ENST00000559460 MYCP01106 439 aaPredicted RBP12.82□□□□□ -0.36
SMAD3-211ENST00000559460 GPSM2P81274 684 aa12.82□□□□□ -0.36
SMAD3-211ENST00000559460 SP3Q02447 781 aa12.82□□□□□ -0.36
SMAD3-211ENST00000559460 PTPN12Q05209 780 aaKnown RBP12.82□□□□□ -0.36
SMAD3-211ENST00000559460 DCTN1Q14203 1278 aa12.82□□□□□ -0.36
SMAD3-211ENST00000559460 CC2D1BQ5T0F9 858 aaKnown RBP12.82□□□□□ -0.36
SMAD3-211ENST00000559460 OGFOD1Q8N543 542 aa12.82□□□□□ -0.36
SMAD3-211ENST00000559460 CFAP53Q96M91 514 aa12.82□□□□□ -0.36
SMAD3-211ENST00000559460 POLLQ9UGP5 575 aa12.82□□□□□ -0.36
SMAD3-211ENST00000559460 NUDCQ9Y266 331 aa12.82□□□□□ -0.36
SMAD3-211ENST00000559460 ERBB4Q15303 1308 aa12.82□□□□□ -0.36
SMAD3-211ENST00000559460 ANKRD36CQ5JPF3 1778 aa12.81□□□□□ -0.36
SMAD3-211ENST00000559460 HTATSF1O43719 755 aaKnown RBP12.81□□□□□ -0.36
SMAD3-211ENST00000559460 SLC10A4Q96EP9 437 aa12.81□□□□□ -0.36
SMAD3-211ENST00000559460 HTATIP2Q9BUP3 242 aa12.81□□□□□ -0.36
SMAD3-211ENST00000559460 MIS18AQ9NYP9 233 aa12.81□□□□□ -0.36
SMAD3-211ENST00000559460 ANGEL1Q9UNK9 670 aaKnown RBP12.81□□□□□ -0.36
SMAD3-211ENST00000559460 LRRC37AA6NMS7 1700 aa12.81□□□□□ -0.36
SMAD3-211ENST00000559460 UFL1O94874 794 aa12.8□□□□□ -0.36
SMAD3-211ENST00000559460 NEFMP07197 916 aa12.8□□□□□ -0.36
SMAD3-211ENST00000559460 ZBTB48P10074 688 aaPredicted RBP12.8□□□□□ -0.36
SMAD3-211ENST00000559460 CNGB1Q14028 1251 aaPredicted RBP12.8□□□□□ -0.36
SMAD3-211ENST00000559460 TBC1D16Q8TBP0 767 aa12.8□□□□□ -0.36
SMAD3-211ENST00000559460 RSPH6AQ9H0K4 717 aa12.8□□□□□ -0.36
SMAD3-211ENST00000559460 ANKIB1Q9P2G1 1089 aa12.8□□□□□ -0.36
SMAD3-211ENST00000559460 NR2E3Q9Y5X4 410 aa12.8□□□□□ -0.36
SMAD3-211ENST00000559460 COL3A1P02461 1466 aaPredicted RBP12.79□□□□□ -0.36
SMAD3-211ENST00000559460 LAMB2P55268 1798 aa12.79□□□□□ -0.36
SMAD3-211ENST00000559460 TRIOBPQ9H2D6 2365 aa12.79□□□□□ -0.36
SMAD3-211ENST00000559460 HSPA5P11021 654 aaKnown RBP12.79□□□□□ -0.36
SMAD3-211ENST00000559460 CRHR2Q13324 411 aa12.79□□□□□ -0.36
SMAD3-211ENST00000559460 ANKRD13DQ6ZTN6 518 aa12.79□□□□□ -0.36
SMAD3-211ENST00000559460 NLRP10Q86W26 655 aa12.79□□□□□ -0.36
SMAD3-211ENST00000559460 APOBEC3FQ8IUX4 373 aaKnown RBP12.79□□□□□ -0.36
SMAD3-211ENST00000559460 A0A1W2PPC1 479 aa12.78□□□□□ -0.36
SMAD3-211ENST00000559460 USP17L3A6NCW0 530 aa12.78□□□□□ -0.36
SMAD3-211ENST00000559460 USP17L4A6NCW7 530 aa12.78□□□□□ -0.36
SMAD3-211ENST00000559460 NBPF9Q3BBW0 867 aa12.78□□□□□ -0.36
SMAD3-211ENST00000559460 USP17L1Q7RTZ2 530 aa12.78□□□□□ -0.36
SMAD3-211ENST00000559460 CELF1Q92879 486 aaKnown RBP12.78□□□□□ -0.36
SMAD3-211ENST00000559460 GGA1Q9UJY5 639 aa12.78□□□□□ -0.36
SMAD3-211ENST00000559460 PTCH2Q9Y6C5 1203 aa12.78□□□□□ -0.36
SMAD3-211ENST00000559460 MKI67P46013 3256 aaKnown RBP12.78□□□□□ -0.36
SMAD3-211ENST00000559460 KIAA0100Q14667 2235 aaKnown RBP12.77□□□□□ -0.36
SMAD3-211ENST00000559460 IGF2BP3O00425 579 aaKnown RBP eCLIP12.77□□□□□ -0.37
SMAD3-211ENST00000559460 PPP1R12BO60237 982 aaPredicted RBP12.77□□□□□ -0.37
SMAD3-211ENST00000559460 U2AF1L5P0DN76 240 aaPredicted RBP12.77□□□□□ -0.37
SMAD3-211ENST00000559460 EIF4A1P60842 406 aaKnown RBP12.77□□□□□ -0.37
SMAD3-211ENST00000559460 U2AF1Q01081 240 aaKnown RBP eCLIP12.77□□□□□ -0.37
SMAD3-211ENST00000559460 FBXW7Q969H0 707 aa12.77□□□□□ -0.37
SMAD3-211ENST00000559460 WDHD1O75717 1129 aaPredicted RBP12.76□□□□□ -0.37
SMAD3-211ENST00000559460 EIF2S2P20042 333 aaKnown RBP12.76□□□□□ -0.37
SMAD3-211ENST00000559460 AIMP1Q12904 312 aaKnown RBP12.76□□□□□ -0.37
SMAD3-211ENST00000559460 KIF22Q14807 665 aa12.76□□□□□ -0.37
SMAD3-211ENST00000559460 LDLRAD1Q5T700 205 aa12.76□□□□□ -0.37
SMAD3-211ENST00000559460 NKX2-3Q8TAU0 364 aa12.76□□□□□ -0.37
SMAD3-211ENST00000559460 WNK4Q96J92 1243 aa12.76□□□□□ -0.37
SMAD3-211ENST00000559460 THUMPD2Q9BTF0 503 aaKnown RBP12.76□□□□□ -0.37
SMAD3-211ENST00000559460 WNT10BO00744 389 aa12.75□□□□□ -0.37
SMAD3-211ENST00000559460 RPS8P62241 208 aaKnown RBP12.75□□□□□ -0.37
SMAD3-211ENST00000559460 PODNQ7Z5L7 613 aa12.75□□□□□ -0.37
SMAD3-211ENST00000559460 PODXL2Q9NZ53 605 aa12.75□□□□□ -0.37
SMAD3-211ENST00000559460 TIMELESSQ9UNS1 1208 aa12.75□□□□□ -0.37
SMAD3-211ENST00000559460 MYO3BQ8WXR4 1341 aa12.74□□□□□ -0.37
SMAD3-211ENST00000559460 SH3TC2Q8TF17 1288 aa12.74□□□□□ -0.37
SMAD3-211ENST00000559460 GMLQ99445 158 aa12.74□□□□□ -0.37
SMAD3-211ENST00000559460 COL1A1P02452 1464 aaPredicted RBP12.73□□□□□ -0.37
SMAD3-211ENST00000559460 WTIPA6NIX2 430 aaPredicted RBP12.73□□□□□ -0.37
SMAD3-211ENST00000559460 SASH1O94885 1247 aa12.73□□□□□ -0.37
SMAD3-211ENST00000559460 SF3B3Q15393 1217 aaKnown RBP12.73□□□□□ -0.37
SMAD3-211ENST00000559460 LRCH3Q96II8 777 aa12.73□□□□□ -0.37
SMAD3-211ENST00000559460 ZFYVE28Q9HCC9 887 aa12.73□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 16.2 ms