RNA–Protein interactions for RNA: ENST00000558324.1

HERC1-202, Transcript of HECT and RLD domain containing E3 ubiquitin protein ligase family member 1, humanhuman

TSL 5

Gene HERC1, Length 828 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HERC1-202ENST00000558324 SHTN1A0MZ66 631 aa15.2■□□□□ 0.02
HERC1-202ENST00000558324 H7C1W4 665 aa15.2■□□□□ 0.02
HERC1-202ENST00000558324 USP50Q70EL3 339 aaPredicted RBP15.2■□□□□ 0.02
HERC1-202ENST00000558324 LINS1Q8NG48 757 aa15.2■□□□□ 0.02
HERC1-202ENST00000558324 ZBTB12Q9Y330 459 aaPredicted RBP15.2■□□□□ 0.02
HERC1-202ENST00000558324 ZNF521Q96K83 1311 aa15.19■□□□□ 0.02
HERC1-202ENST00000558324 TMEM88BA6NKF7 163 aa15.19■□□□□ 0.02
HERC1-202ENST00000558324 G3V3G9 751 aa15.19■□□□□ 0.02
HERC1-202ENST00000558324 PSMD14O00487 310 aa15.19■□□□□ 0.02
HERC1-202ENST00000558324 FMR1Q06787 632 aaKnown RBP eCLIP15.19■□□□□ 0.022e-6■■□□□ 12.9
HERC1-202ENST00000558324 DCAF8Q5TAQ9 597 aa15.19■□□□□ 0.02
HERC1-202ENST00000558324 ZC3H12CQ9C0D7 883 aaKnown RBP15.19■□□□□ 0.02
HERC1-202ENST00000558324 KCNQ5Q9NR82 932 aa15.19■□□□□ 0.02
HERC1-202ENST00000558324 PODXL2Q9NZ53 605 aa15.19■□□□□ 0.02
HERC1-202ENST00000558324 XDHP47989 1333 aa15.18■□□□□ 0.02
HERC1-202ENST00000558324 SPEF2Q9C093 1822 aa15.18■□□□□ 0.02
HERC1-202ENST00000558324 TRAF5O00463 557 aa15.18■□□□□ 0.02
HERC1-202ENST00000558324 FAM161AQ3B820 660 aa15.18■□□□□ 0.02
HERC1-202ENST00000558324 MICALL2Q8IY33 904 aa15.18■□□□□ 0.02
HERC1-202ENST00000558324 TRPM4Q8TD43 1214 aa15.18■□□□□ 0.02
HERC1-202ENST00000558324 CNOT7Q9UIV1 285 aaKnown RBP15.18■□□□□ 0.02
HERC1-202ENST00000558324 RTL9Q8NET4 1388 aa15.18■□□□□ 0.02
HERC1-202ENST00000558324 CNTNAP1P78357 1384 aa15.17■□□□□ 0.02
HERC1-202ENST00000558324 CASP7P55210 303 aa15.17■□□□□ 0.02
HERC1-202ENST00000558324 ABT1Q9ULW3 272 aaKnown RBP15.17■□□□□ 0.02
HERC1-202ENST00000558324 MYH3P11055 1940 aa15.17■□□□□ 0.02
HERC1-202ENST00000558324 WTIPA6NIX2 430 aaPredicted RBP15.16■□□□□ 0.02
HERC1-202ENST00000558324 H7C1D1 291 aa15.16■□□□□ 0.02
HERC1-202ENST00000558324 ITGA6P23229 1130 aa15.16■□□□□ 0.02
HERC1-202ENST00000558324 IGHMBP2P38935 993 aaKnown RBP15.16■□□□□ 0.02
HERC1-202ENST00000558324 BEND3Q5T5X7 828 aa15.16■□□□□ 0.02
HERC1-202ENST00000558324 SLC4A10Q6U841 1118 aa15.16■□□□□ 0.02
HERC1-202ENST00000558324 HSPA1AP0DMV8 641 aaKnown RBP15.15■□□□□ 0.02
HERC1-202ENST00000558324 HSPA1BP0DMV9 641 aaKnown RBP15.15■□□□□ 0.02
HERC1-202ENST00000558324 ATP2B4P23634 1241 aa15.15■□□□□ 0.02
HERC1-202ENST00000558324 HIRAP54198 1017 aaPredicted RBP15.15■□□□□ 0.02
HERC1-202ENST00000558324 TBC1D10BQ4KMP7 808 aaPredicted RBP15.15■□□□□ 0.02
HERC1-202ENST00000558324 SAMD7Q7Z3H4 446 aa15.15■□□□□ 0.02
HERC1-202ENST00000558324 PLA2G12BQ9BX93 195 aa15.15■□□□□ 0.02
HERC1-202ENST00000558324 BSDC1Q9NW68 430 aaPredicted RBP15.15■□□□□ 0.02
HERC1-202ENST00000558324 MINPP1Q9UNW1 487 aa15.15■□□□□ 0.02
HERC1-202ENST00000558324 CHMP3Q9Y3E7 222 aa15.15■□□□□ 0.02
HERC1-202ENST00000558324 RBM26Q5T8P6 1007 aaKnown RBP15.14■□□□□ 0.01
HERC1-202ENST00000558324 GLIS2Q9BZE0 524 aaPredicted RBP15.14■□□□□ 0.01
HERC1-202ENST00000558324 CACNA1FO60840 1977 aa15.14■□□□□ 0.01
HERC1-202ENST00000558324 E9PSI1 815 aa15.13■□□□□ 0.01
HERC1-202ENST00000558324 EGFRP00533 1210 aa15.13■□□□□ 0.01
HERC1-202ENST00000558324 CSF1RP07333 972 aa15.13■□□□□ 0.01
HERC1-202ENST00000558324 VEGFBP49765 207 aa15.13■□□□□ 0.01
HERC1-202ENST00000558324 CCT4P50991 539 aaKnown RBP15.13■□□□□ 0.01
HERC1-202ENST00000558324 DPF2Q92785 391 aa15.13■□□□□ 0.01
HERC1-202ENST00000558324 MPHOSPH8Q99549 860 aa15.13■□□□□ 0.01
HERC1-202ENST00000558324 ZNF408Q9H9D4 720 aa15.13■□□□□ 0.01
HERC1-202ENST00000558324 SCN9AQ15858 1988 aa15.13■□□□□ 0.01
HERC1-202ENST00000558324 MED23Q9ULK4 1368 aa15.12■□□□□ 0.01
HERC1-202ENST00000558324 ANKRD18BA2A2Z9 1011 aa15.12■□□□□ 0.01
HERC1-202ENST00000558324 GRM8O00222 908 aa15.12■□□□□ 0.01
HERC1-202ENST00000558324 RPS12P25398 132 aaKnown RBP15.12■□□□□ 0.01
HERC1-202ENST00000558324 FOXO4P98177 505 aa15.12■□□□□ 0.01
HERC1-202ENST00000558324 PAXIP1Q6ZW49 1069 aaPredicted RBP15.12■□□□□ 0.01
HERC1-202ENST00000558324 FBXW7Q969H0 707 aa15.12■□□□□ 0.01
HERC1-202ENST00000558324 CDCA7LQ96GN5 454 aa15.12■□□□□ 0.01
HERC1-202ENST00000558324 C9orf78Q9NZ63 289 aaPredicted RBP15.12■□□□□ 0.01
HERC1-202ENST00000558324 VIL1P09327 827 aaKnown RBP15.11■□□□□ 0.01
HERC1-202ENST00000558324 SLFN5Q08AF3 891 aa15.11■□□□□ 0.01
HERC1-202ENST00000558324 GRM1Q13255 1194 aa15.11■□□□□ 0.01
HERC1-202ENST00000558324 IFIT5Q13325 482 aaKnown RBP15.11■□□□□ 0.01
HERC1-202ENST00000558324 DEFB115Q30KQ5 88 aa15.11■□□□□ 0.01
HERC1-202ENST00000558324 EPHA10Q5JZY3 1008 aa15.11■□□□□ 0.01
HERC1-202ENST00000558324 CST9Q5W186 159 aa15.11■□□□□ 0.01
HERC1-202ENST00000558324 MRPL50Q8N5N7 158 aaKnown RBP15.11■□□□□ 0.01
HERC1-202ENST00000558324 SRCIN1Q9C0H9 1055 aa15.11■□□□□ 0.01
HERC1-202ENST00000558324 RASSF10A6NK89 507 aa15.1■□□□□ 0.01
HERC1-202ENST00000558324 CCER2I3L3R5 266 aa15.1■□□□□ 0.01
HERC1-202ENST00000558324 CELF2O95319 508 aaKnown RBP15.1■□□□□ 0.01
HERC1-202ENST00000558324 KLRK1P26718 216 aa15.1■□□□□ 0.01
HERC1-202ENST00000558324 KCNJ4P48050 445 aa15.1■□□□□ 0.01
HERC1-202ENST00000558324 KIF4BQ2VIQ3 1234 aa15.1■□□□□ 0.01
HERC1-202ENST00000558324 RSBN1LQ6PCB5 846 aaPredicted RBP15.1■□□□□ 0.01
HERC1-202ENST00000558324 LMBR1LQ6UX01 489 aa15.1■□□□□ 0.01
HERC1-202ENST00000558324 DLK2Q6UY11 383 aa15.1■□□□□ 0.01
HERC1-202ENST00000558324 USP48Q86UV5 1035 aa15.1■□□□□ 0.01
HERC1-202ENST00000558324 ZC3H15Q8WU90 426 aaKnown RBP15.1■□□□□ 0.01
HERC1-202ENST00000558324 ANKRD2Q9GZV1 360 aa15.1■□□□□ 0.01
HERC1-202ENST00000558324 PGAP2Q9UHJ9 254 aa15.1■□□□□ 0.01
HERC1-202ENST00000558324 ZNF804BA4D1E1 1349 aa15.1■□□□□ 0.01
HERC1-202ENST00000558324 ALDH1L1O75891 902 aa15.09■□□□□ 0.01
HERC1-202ENST00000558324 CHRNDQ07001 517 aa15.09■□□□□ 0.01
HERC1-202ENST00000558324 TAF7LQ5H9L4 462 aa15.09■□□□□ 0.01
HERC1-202ENST00000558324 COL13A1Q5TAT6 717 aaPredicted RBP15.09■□□□□ 0.01
HERC1-202ENST00000558324 CDC37L1Q7L3B6 337 aa15.09■□□□□ 0.01
HERC1-202ENST00000558324 PODNQ7Z5L7 613 aa15.09■□□□□ 0.01
HERC1-202ENST00000558324 TXNRD3Q86VQ6 643 aa15.09■□□□□ 0.01
HERC1-202ENST00000558324 SSH1Q8WYL5 1049 aa15.09■□□□□ 0.01
HERC1-202ENST00000558324 ZNF594Q96JF6 807 aaPredicted RBP15.09■□□□□ 0.01
HERC1-202ENST00000558324 LEMD3Q9Y2U8 911 aa15.09■□□□□ 0.01
HERC1-202ENST00000558324 PCNTO95613 3336 aa15.09■□□□□ 0.01
HERC1-202ENST00000558324 USP17L3A6NCW0 530 aa15.08■□□□□ 0
HERC1-202ENST00000558324 USP17L4A6NCW7 530 aa15.08■□□□□ 0
HERC1-202ENST00000558324 ADM5C9JUS6 153 aa15.08■□□□□ 0
Retrieved 100 of 20,778 RNA–protein pairs in 13.5 ms