RNA–Protein interactions for RNA: ENST00000558088.1

VPS13C-205, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 2

Gene VPS13C, Length 549 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-205ENST00000558088 SPACA7Q96KW9 195 aa5.99□□□□□ -1.45
VPS13C-205ENST00000558088 RNF112Q9ULX5 631 aa5.99□□□□□ -1.45
VPS13C-205ENST00000558088 FAM177BA6PVY3 158 aa5.98□□□□□ -1.45
VPS13C-205ENST00000558088 PRMT3O60678 531 aa5.98□□□□□ -1.45
VPS13C-205ENST00000558088 PTCD1O75127 700 aaKnown RBP5.98□□□□□ -1.45
VPS13C-205ENST00000558088 HOXD8P13378 290 aaPredicted RBP5.98□□□□□ -1.45
VPS13C-205ENST00000558088 PRIMPOLQ96LW4 560 aa5.98□□□□□ -1.45
VPS13C-205ENST00000558088 ZNF777Q9ULD5 760 aaPredicted RBP5.98□□□□□ -1.45
VPS13C-205ENST00000558088 FNDC3AQ9Y2H6 1198 aaKnown RBP5.98□□□□□ -1.45
VPS13C-205ENST00000558088 KCNMB2Q9Y691 235 aa5.98□□□□□ -1.45
VPS13C-205ENST00000558088 UBAP1LF5GYI3 381 aa5.97□□□□□ -1.45
VPS13C-205ENST00000558088 GLB1P16278 677 aa5.97□□□□□ -1.45
VPS13C-205ENST00000558088 TMEM130Q8N3G9 435 aa5.97□□□□□ -1.45
VPS13C-205ENST00000558088 PCMTD2Q9NV79 361 aa5.97□□□□□ -1.45
VPS13C-205ENST00000558088 PPME1Q9Y570 386 aa5.97□□□□□ -1.45
VPS13C-205ENST00000558088 F8W735 103 aaPredicted RBP5.96□□□□□ -1.46
VPS13C-205ENST00000558088 GSC2O15499 205 aa5.96□□□□□ -1.46
VPS13C-205ENST00000558088 SMNDC1O75940 238 aaKnown RBP eCLIP5.96□□□□□ -1.46
VPS13C-205ENST00000558088 FSTP19883 344 aa5.96□□□□□ -1.46
VPS13C-205ENST00000558088 HYAL2Q12891 473 aa5.96□□□□□ -1.46
VPS13C-205ENST00000558088 TTC39BQ5VTQ0 682 aaPredicted RBP5.96□□□□□ -1.46
VPS13C-205ENST00000558088 ETFBKMTQ8IXQ9 262 aa5.96□□□□□ -1.46
VPS13C-205ENST00000558088 DZIP1LQ8IYY4 767 aaKnown RBP5.96□□□□□ -1.46
VPS13C-205ENST00000558088 COL26A1Q96A83 441 aa5.96□□□□□ -1.46
VPS13C-205ENST00000558088 ALX3O95076 343 aa5.95□□□□□ -1.46
VPS13C-205ENST00000558088 SCNN1AP37088 669 aa5.95□□□□□ -1.46
VPS13C-205ENST00000558088 FAM117BQ6P1L5 589 aa5.95□□□□□ -1.46
VPS13C-205ENST00000558088 CEP41Q9BYV8 373 aa5.95□□□□□ -1.46
VPS13C-205ENST00000558088 TRIM33Q9UPN9 1127 aa5.95□□□□□ -1.46
VPS13C-205ENST00000558088 ELOAQ14241 798 aaKnown RBP5.94□□□□□ -1.46
VPS13C-205ENST00000558088 SETDB1Q15047 1291 aa5.94□□□□□ -1.46
VPS13C-205ENST00000558088 OR13H1Q8NG92 308 aa5.94□□□□□ -1.46
VPS13C-205ENST00000558088 MKNK1Q9BUB5 465 aa5.94□□□□□ -1.46
VPS13C-205ENST00000558088 DHX15O43143 795 aaKnown RBP5.93□□□□□ -1.46
VPS13C-205ENST00000558088 ZAP70P43403 619 aa5.93□□□□□ -1.46
VPS13C-205ENST00000558088 TRIP4Q15650 581 aaPredicted RBP5.93□□□□□ -1.46
VPS13C-205ENST00000558088 OCLNQ16625 522 aa5.93□□□□□ -1.46
VPS13C-205ENST00000558088 CEP135Q66GS9 1140 aa5.93□□□□□ -1.46
VPS13C-205ENST00000558088 ABTB2Q8N961 1025 aa5.93□□□□□ -1.46
VPS13C-205ENST00000558088 SAP130Q9H0E3 1048 aa5.93□□□□□ -1.46
VPS13C-205ENST00000558088 CDC27P30260 824 aa5.92□□□□□ -1.46
VPS13C-205ENST00000558088 CD68P34810 354 aaPredicted RBP5.92□□□□□ -1.46
VPS13C-205ENST00000558088 Q6ZS46 218 aa5.92□□□□□ -1.46
VPS13C-205ENST00000558088 ACAD11Q709F0 780 aa5.92□□□□□ -1.46
VPS13C-205ENST00000558088 ZC3HAV1Q7Z2W4 902 aaKnown RBP5.92□□□□□ -1.46
VPS13C-205ENST00000558088 LACRTQ9GZZ8 138 aa5.92□□□□□ -1.46
VPS13C-205ENST00000558088 CXXC1Q9P0U4 656 aaPredicted RBP5.92□□□□□ -1.46
VPS13C-205ENST00000558088 STIM2Q9P246 746 aa5.92□□□□□ -1.46
VPS13C-205ENST00000558088 STOML1Q9UBI4 398 aa5.92□□□□□ -1.46
VPS13C-205ENST00000558088 RAXQ9Y2V3 346 aa5.92□□□□□ -1.46
VPS13C-205ENST00000558088 LINC01387J3KSC0 135 aa5.91□□□□□ -1.46
VPS13C-205ENST00000558088 SSTR4P31391 388 aa5.91□□□□□ -1.46
VPS13C-205ENST00000558088 NAA30Q147X3 362 aaPredicted RBP5.91□□□□□ -1.46
VPS13C-205ENST00000558088 NCAPG2Q86XI2 1143 aa5.91□□□□□ -1.46
VPS13C-205ENST00000558088 AGGF1Q8N302 714 aaeCLIP5.91□□□□□ -1.46
VPS13C-205ENST00000558088 GPR152Q8TDT2 470 aa5.91□□□□□ -1.46
VPS13C-205ENST00000558088 STK32AQ8WU08 396 aa5.91□□□□□ -1.46
VPS13C-205ENST00000558088 ABI2Q9NYB9 513 aaPredicted RBP5.91□□□□□ -1.46
VPS13C-205ENST00000558088 ZMIZ1Q9ULJ6 1067 aa5.91□□□□□ -1.46
VPS13C-205ENST00000558088 TNFRSF10BO14763 440 aa5.9□□□□□ -1.46
VPS13C-205ENST00000558088 RPLP1P05386 114 aaKnown RBP5.9□□□□□ -1.46
VPS13C-205ENST00000558088 PTPRAP18433 802 aa5.9□□□□□ -1.46
VPS13C-205ENST00000558088 CDC25BP30305 580 aa5.9□□□□□ -1.46
VPS13C-205ENST00000558088 CABP4P57796 275 aa5.9□□□□□ -1.46
VPS13C-205ENST00000558088 ATP11AP98196 1134 aa5.9□□□□□ -1.46
VPS13C-205ENST00000558088 UVSSAQ2YD98 709 aa5.9□□□□□ -1.46
VPS13C-205ENST00000558088 KLHL23Q8NBE8 558 aa5.9□□□□□ -1.46
VPS13C-205ENST00000558088 TTC16Q8NEE8 873 aa5.9□□□□□ -1.46
VPS13C-205ENST00000558088 UTP4Q969X6 686 aaKnown RBP5.9□□□□□ -1.46
VPS13C-205ENST00000558088 COBLO75128 1261 aa5.89□□□□□ -1.47
VPS13C-205ENST00000558088 IGLV1-40P01703 118 aa5.89□□□□□ -1.47
VPS13C-205ENST00000558088 PCSK2P16519 638 aa5.89□□□□□ -1.47
VPS13C-205ENST00000558088 GRIK1P39086 918 aa5.89□□□□□ -1.47
VPS13C-205ENST00000558088 DUOXA2Q1HG44 320 aa5.89□□□□□ -1.47
VPS13C-205ENST00000558088 PDE12Q6L8Q7 609 aaKnown RBP5.89□□□□□ -1.47
VPS13C-205ENST00000558088 TXNDC11Q6PKC3 985 aa5.89□□□□□ -1.47
VPS13C-205ENST00000558088 RASSF4Q9H2L5 321 aa5.89□□□□□ -1.47
VPS13C-205ENST00000558088 FSCN2O14926 492 aa5.88□□□□□ -1.47
VPS13C-205ENST00000558088 SART1O43290 800 aaKnown RBP5.88□□□□□ -1.47
VPS13C-205ENST00000558088 ATG7O95352 703 aa5.88□□□□□ -1.47
VPS13C-205ENST00000558088 FAM69CQ0P6D2 419 aa5.88□□□□□ -1.47
VPS13C-205ENST00000558088 COL13A1Q5TAT6 717 aaPredicted RBP5.88□□□□□ -1.47
VPS13C-205ENST00000558088 MCTP1Q6DN14 999 aa5.88□□□□□ -1.47
VPS13C-205ENST00000558088 ZNF438Q7Z4V0 828 aa5.88□□□□□ -1.47
VPS13C-205ENST00000558088 GALNT11Q8NCW6 608 aa5.88□□□□□ -1.47
VPS13C-205ENST00000558088 CARD10Q9BWT7 1032 aa5.88□□□□□ -1.47
VPS13C-205ENST00000558088 PBX4Q9BYU1 374 aa5.88□□□□□ -1.47
VPS13C-205ENST00000558088 SEC31BQ9NQW1 1179 aa5.88□□□□□ -1.47
VPS13C-205ENST00000558088 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP5.87□□□□□ -1.47
VPS13C-205ENST00000558088 PAX4O43316 350 aa5.87□□□□□ -1.47
VPS13C-205ENST00000558088 KIF4AO95239 1232 aa5.87□□□□□ -1.47
VPS13C-205ENST00000558088 CD97P48960 835 aa5.87□□□□□ -1.47
VPS13C-205ENST00000558088 TMEM164Q5U3C3 297 aa5.87□□□□□ -1.47
VPS13C-205ENST00000558088 CLP1Q92989 425 aaKnown RBP5.87□□□□□ -1.47
VPS13C-205ENST00000558088 UBL7Q96S82 380 aaPredicted RBP5.87□□□□□ -1.47
VPS13C-205ENST00000558088 ELP3Q9H9T3 547 aa5.87□□□□□ -1.47
VPS13C-205ENST00000558088 WISP1O95388 367 aa5.86□□□□□ -1.47
VPS13C-205ENST00000558088 IRAK1P51617 712 aa5.86□□□□□ -1.47
VPS13C-205ENST00000558088 PIP4K2BP78356 416 aa5.86□□□□□ -1.47
VPS13C-205ENST00000558088 FAM26DQ5JW98 314 aa5.86□□□□□ -1.47
Retrieved 100 of 20,778 RNA–protein pairs in 390.9 ms