RNA–Protein interactions for RNA: ENST00000557342.5

SLIRP-209, Transcript of SRA stem-loop interacting RNA binding protein, humanhuman

TSL 1 (best) BASIC

Gene SLIRP, Length 408 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SLIRP-209ENST00000557342 FRAT1Q92837 279 aaPredicted RBP15.71■□□□□ 0.11
SLIRP-209ENST00000557342 SUCLG2Q96I99 432 aa15.71■□□□□ 0.11
SLIRP-209ENST00000557342 USP44Q9H0E7 712 aa15.71■□□□□ 0.11
SLIRP-209ENST00000557342 GGA1Q9UJY5 639 aa15.71■□□□□ 0.11
SLIRP-209ENST00000557342 A0A1B0GUL6 1792 aa15.71■□□□□ 0.11
SLIRP-209ENST00000557342 DDNO94850 711 aaPredicted RBP15.7■□□□□ 0.1
SLIRP-209ENST00000557342 ATP2B4P23634 1241 aa15.7■□□□□ 0.1
SLIRP-209ENST00000557342 TAF7LQ5H9L4 462 aa15.7■□□□□ 0.1
SLIRP-209ENST00000557342 EPHA10Q5JZY3 1008 aa15.7■□□□□ 0.1
SLIRP-209ENST00000557342 ZKSCAN2Q63HK3 967 aa15.7■□□□□ 0.1
SLIRP-209ENST00000557342 TBC1D16Q8TBP0 767 aa15.7■□□□□ 0.1
SLIRP-209ENST00000557342 POLLQ9UGP5 575 aa15.7■□□□□ 0.1
SLIRP-209ENST00000557342 ZNRF3Q9ULT6 936 aa15.7■□□□□ 0.1
SLIRP-209ENST00000557342 MINPP1Q9UNW1 487 aa15.7■□□□□ 0.1
SLIRP-209ENST00000557342 ZNF541Q9H0D2 1346 aa15.69■□□□□ 0.1
SLIRP-209ENST00000557342 UFL1O94874 794 aa15.69■□□□□ 0.1
SLIRP-209ENST00000557342 TRIM27P14373 513 aa15.69■□□□□ 0.1
SLIRP-209ENST00000557342 INTS3Q68E01 1043 aaKnown RBP15.69■□□□□ 0.1
SLIRP-209ENST00000557342 GPC2Q8N158 579 aa15.69■□□□□ 0.1
SLIRP-209ENST00000557342 KAZALD1Q96I82 304 aa15.69■□□□□ 0.1
SLIRP-209ENST00000557342 ZC3H12CQ9C0D7 883 aaKnown RBP15.69■□□□□ 0.1
SLIRP-209ENST00000557342 ANKRD2Q9GZV1 360 aa15.69■□□□□ 0.1
SLIRP-209ENST00000557342 BICC1Q9H694 974 aaKnown RBP15.69■□□□□ 0.1
SLIRP-209ENST00000557342 IQCA1LA6NCM1 817 aa15.68■□□□□ 0.1
SLIRP-209ENST00000557342 RIMBP2O15034 1052 aa15.68■□□□□ 0.1
SLIRP-209ENST00000557342 TOMM70O94826 608 aa15.68■□□□□ 0.1
SLIRP-209ENST00000557342 UBTFL1P0CB47 393 aaPredicted RBP15.68■□□□□ 0.1
SLIRP-209ENST00000557342 C1QTNF8P60827 252 aa15.68■□□□□ 0.1
SLIRP-209ENST00000557342 RABL6Q3YEC7 729 aaPredicted RBP15.68■□□□□ 0.1
SLIRP-209ENST00000557342 L3MBTL3Q96JM7 780 aaPredicted RBP15.68■□□□□ 0.1
SLIRP-209ENST00000557342 PSME4Q14997 1843 aa15.67■□□□□ 0.1
SLIRP-209ENST00000557342 G3V3G9 751 aa15.67■□□□□ 0.1
SLIRP-209ENST00000557342 DCAF8Q5TAQ9 597 aa15.67■□□□□ 0.1
SLIRP-209ENST00000557342 LEMD3Q9Y2U8 911 aa15.67■□□□□ 0.1
SLIRP-209ENST00000557342 GNAI3P08754 354 aa15.66■□□□□ 0.1
SLIRP-209ENST00000557342 TNIP1Q15025 636 aa15.66■□□□□ 0.1
SLIRP-209ENST00000557342 LDHAL6AQ6ZMR3 332 aa15.66■□□□□ 0.1
SLIRP-209ENST00000557342 CNNM1Q9NRU3 951 aa15.66■□□□□ 0.1
SLIRP-209ENST00000557342 GJA3Q9Y6H8 435 aa15.66■□□□□ 0.1
SLIRP-209ENST00000557342 MED23Q9ULK4 1368 aa15.65■□□□□ 0.1
SLIRP-209ENST00000557342 POTECB2RU33 542 aa15.65■□□□□ 0.1
SLIRP-209ENST00000557342 CHRNDQ07001 517 aa15.65■□□□□ 0.1
SLIRP-209ENST00000557342 CIAPIN1Q6FI81 312 aa15.65■□□□□ 0.1
SLIRP-209ENST00000557342 ANKRD44Q8N8A2 993 aa15.65■□□□□ 0.1
SLIRP-209ENST00000557342 RBM46Q8TBY0 533 aaKnown RBP15.65■□□□□ 0.1
SLIRP-209ENST00000557342 ECE2O60344 883 aa15.64■□□□□ 0.09
SLIRP-209ENST00000557342 LMOD1P29536 600 aaPredicted RBP15.64■□□□□ 0.09
SLIRP-209ENST00000557342 KCNJ4P48050 445 aa15.64■□□□□ 0.09
SLIRP-209ENST00000557342 CXCL9Q07325 125 aa15.64■□□□□ 0.09
SLIRP-209ENST00000557342 FTSJ3Q8IY81 847 aaKnown RBP15.64■□□□□ 0.09
SLIRP-209ENST00000557342 CLUAP1Q96AJ1 413 aa15.64■□□□□ 0.09
SLIRP-209ENST00000557342 ZNF594Q96JF6 807 aaPredicted RBP15.64■□□□□ 0.09
SLIRP-209ENST00000557342 GPR101Q96P66 508 aaPredicted RBP15.64■□□□□ 0.09
SLIRP-209ENST00000557342 DBNDD1Q9H9R9 158 aa15.64■□□□□ 0.09
SLIRP-209ENST00000557342 HACL1Q9UJ83 578 aa15.64■□□□□ 0.09
SLIRP-209ENST00000557342 ZNF804BA4D1E1 1349 aa15.64■□□□□ 0.09
SLIRP-209ENST00000557342 YDJCA8MPS7 323 aa15.63■□□□□ 0.09
SLIRP-209ENST00000557342 MS4A1P11836 297 aa15.63■□□□□ 0.09
SLIRP-209ENST00000557342 DOK7Q18PE1 504 aa15.63■□□□□ 0.09
SLIRP-209ENST00000557342 MEIS3Q99687 375 aa15.63■□□□□ 0.09
SLIRP-209ENST00000557342 SCN9AQ15858 1988 aa15.63■□□□□ 0.09
SLIRP-209ENST00000557342 RAD17O75943 681 aa15.62■□□□□ 0.09
SLIRP-209ENST00000557342 FSTL1Q12841 308 aa15.62■□□□□ 0.09
SLIRP-209ENST00000557342 DZIP1LQ8IYY4 767 aaKnown RBP15.62■□□□□ 0.09
SLIRP-209ENST00000557342 SMC1BQ8NDV3 1235 aa15.62■□□□□ 0.09
SLIRP-209ENST00000557342 TAF1DQ9H5J8 278 aaPredicted RBP15.62■□□□□ 0.09
SLIRP-209ENST00000557342 RCAN3Q9UKA8 241 aa15.62■□□□□ 0.09
SLIRP-209ENST00000557342 TNNQ9UQP3 1299 aa15.62■□□□□ 0.09
SLIRP-209ENST00000557342 LRRFIP2Q9Y608 721 aaKnown RBP15.62■□□□□ 0.09
SLIRP-209ENST00000557342 MROH5Q6ZUA9 1318 aa15.62■□□□□ 0.09
SLIRP-209ENST00000557342 EPHX2P34913 555 aa15.61■□□□□ 0.09
SLIRP-209ENST00000557342 PODNQ7Z5L7 613 aa15.61■□□□□ 0.09
SLIRP-209ENST00000557342 PNMA8AQ86V59 439 aaPredicted RBP15.61■□□□□ 0.09
SLIRP-209ENST00000557342 TMEM57Q8N5G2 664 aa15.61■□□□□ 0.09
SLIRP-209ENST00000557342 TAF5LO75529 589 aa15.6■□□□□ 0.09
SLIRP-209ENST00000557342 SCNN1DP51172 638 aa15.6■□□□□ 0.09
SLIRP-209ENST00000557342 HELBQ8NG08 1087 aaPredicted RBP15.6■□□□□ 0.09
SLIRP-209ENST00000557342 COA1Q9GZY4 146 aa15.6■□□□□ 0.09
SLIRP-209ENST00000557342 RIPOR2Q9Y4F9 1068 aa15.6■□□□□ 0.09
SLIRP-209ENST00000557342 PSMD14O00487 310 aa15.59■□□□□ 0.09
SLIRP-209ENST00000557342 PLIN1O60240 522 aa15.59■□□□□ 0.09
SLIRP-209ENST00000557342 GNAI2P04899 355 aa15.59■□□□□ 0.09
SLIRP-209ENST00000557342 GMPSP49915 693 aaPredicted RBP15.59■□□□□ 0.09
SLIRP-209ENST00000557342 C15orf52Q6ZUT6 534 aaKnown RBP15.59■□□□□ 0.09
SLIRP-209ENST00000557342 PUS3Q9BZE2 481 aaKnown RBP15.59■□□□□ 0.09
SLIRP-209ENST00000557342 GPRC5DQ9NZD1 345 aa15.59■□□□□ 0.09
SLIRP-209ENST00000557342 FBXO3Q9UK99 471 aa15.59■□□□□ 0.09
SLIRP-209ENST00000557342 ADAMTSL1Q8N6G6 1762 aa15.59■□□□□ 0.09
SLIRP-209ENST00000557342 WTIPA6NIX2 430 aaPredicted RBP15.58■□□□□ 0.08
SLIRP-209ENST00000557342 RPS12P25398 132 aaKnown RBP15.58■□□□□ 0.08
SLIRP-209ENST00000557342 RFX5P48382 616 aaPredicted RBP15.58■□□□□ 0.08
SLIRP-209ENST00000557342 UBE4AQ14139 1066 aa15.58■□□□□ 0.08
SLIRP-209ENST00000557342 LDHDQ86WU2 507 aa15.58■□□□□ 0.08
SLIRP-209ENST00000557342 ITPRIPQ8IWB1 547 aa15.58■□□□□ 0.08
SLIRP-209ENST00000557342 DPF2Q92785 391 aa15.58■□□□□ 0.08
SLIRP-209ENST00000557342 ZNF646O15015 1829 aaPredicted RBP15.57■□□□□ 0.08
SLIRP-209ENST00000557342 USP17L3A6NCW0 530 aa15.57■□□□□ 0.08
SLIRP-209ENST00000557342 USP17L4A6NCW7 530 aa15.57■□□□□ 0.08
SLIRP-209ENST00000557342 EYA2O00167 538 aa15.57■□□□□ 0.08
SLIRP-209ENST00000557342 VIL1P09327 827 aaKnown RBP15.57■□□□□ 0.08
Retrieved 100 of 20,778 RNA–protein pairs in 147.2 ms