RNA–Protein interactions for RNA: ENST00000556956.1

SLIRP-208, Transcript of SRA stem-loop interacting RNA binding protein, humanhuman

TSL 2

Gene SLIRP, Length 450 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SLIRP-208ENST00000556956 VRTNQ9H8Y1 702 aa4.29□□□□□ -1.72
SLIRP-208ENST00000556956 ANKIB1Q9P2G1 1089 aa4.29□□□□□ -1.72
SLIRP-208ENST00000556956 ZNF232Q9UNY5 417 aa4.29□□□□□ -1.72
SLIRP-208ENST00000556956 GTF3C3Q9Y5Q9 886 aa4.29□□□□□ -1.72
SLIRP-208ENST00000556956 SERTM1A2A2V5 107 aa4.28□□□□□ -1.72
SLIRP-208ENST00000556956 MEGF11A6BM72 1044 aa4.28□□□□□ -1.72
SLIRP-208ENST00000556956 WISP1O95388 367 aa4.28□□□□□ -1.72
SLIRP-208ENST00000556956 FOSL1P15407 271 aa4.28□□□□□ -1.72
SLIRP-208ENST00000556956 NOS2P35228 1153 aa4.28□□□□□ -1.72
SLIRP-208ENST00000556956 SEC13P55735 322 aa4.28□□□□□ -1.72
SLIRP-208ENST00000556956 PSMA6P60900 246 aaKnown RBP4.28□□□□□ -1.72
SLIRP-208ENST00000556956 HIF1AQ16665 826 aa4.28□□□□□ -1.72
SLIRP-208ENST00000556956 DIEXFQ68CQ4 756 aaKnown RBP4.28□□□□□ -1.72
SLIRP-208ENST00000556956 GGNQ86UU5 652 aa4.28□□□□□ -1.72
SLIRP-208ENST00000556956 CLEC10AQ8IUN9 316 aa4.28□□□□□ -1.72
SLIRP-208ENST00000556956 SIX5Q8N196 739 aa4.28□□□□□ -1.72
SLIRP-208ENST00000556956 FLCNQ8NFG4 579 aa4.28□□□□□ -1.72
SLIRP-208ENST00000556956 FAM168AQ92567 244 aa4.28□□□□□ -1.72
SLIRP-208ENST00000556956 L3MBTL2Q969R5 705 aa4.28□□□□□ -1.72
SLIRP-208ENST00000556956 HSH2DQ96JZ2 352 aa4.28□□□□□ -1.72
SLIRP-208ENST00000556956 C20orf173Q96LM9 149 aa4.28□□□□□ -1.72
SLIRP-208ENST00000556956 MYRFLQ96LU7 910 aa4.28□□□□□ -1.72
SLIRP-208ENST00000556956 MFSD14AQ96MC6 490 aa4.28□□□□□ -1.72
SLIRP-208ENST00000556956 UCN2Q96RP3 112 aa4.28□□□□□ -1.72
SLIRP-208ENST00000556956 FAM83CQ9BQN1 747 aa4.28□□□□□ -1.72
SLIRP-208ENST00000556956 UTP3Q9NQZ2 479 aaKnown RBP eCLIP4.28□□□□□ -1.726e-11■■■■■ 34.8
SLIRP-208ENST00000556956 MAFBQ9Y5Q3 323 aaPredicted RBP4.28□□□□□ -1.72
SLIRP-208ENST00000556956 LMOD1P29536 600 aaPredicted RBP4.27□□□□□ -1.73
SLIRP-208ENST00000556956 RAP1GAPP47736 663 aa4.27□□□□□ -1.73
SLIRP-208ENST00000556956 CLDN10P78369 228 aa4.27□□□□□ -1.73
SLIRP-208ENST00000556956 TYRO3Q06418 890 aa4.27□□□□□ -1.73
SLIRP-208ENST00000556956 SETDB1Q15047 1291 aa4.27□□□□□ -1.73
SLIRP-208ENST00000556956 C1orf53Q5VUE5 145 aa4.27□□□□□ -1.73
SLIRP-208ENST00000556956 SLC9A9Q8IVB4 645 aa4.27□□□□□ -1.73
SLIRP-208ENST00000556956 TNS4Q8IZW8 715 aa4.27□□□□□ -1.73
SLIRP-208ENST00000556956 AGBL5Q8NDL9 886 aa4.27□□□□□ -1.73
SLIRP-208ENST00000556956 FAM84AQ96KN4 292 aa4.27□□□□□ -1.73
SLIRP-208ENST00000556956 FRRS1LQ9P0K9 344 aa4.27□□□□□ -1.73
SLIRP-208ENST00000556956 LEMD3Q9Y2U8 911 aa4.27□□□□□ -1.73
SLIRP-208ENST00000556956 TTBK1Q5TCY1 1321 aaPredicted RBP4.26□□□□□ -1.73
SLIRP-208ENST00000556956 FAM196BA6NMK8 535 aa4.26□□□□□ -1.73
SLIRP-208ENST00000556956 UVSSAQ2YD98 709 aa4.26□□□□□ -1.73
SLIRP-208ENST00000556956 FAM20CQ8IXL6 584 aa4.26□□□□□ -1.73
SLIRP-208ENST00000556956 BHLHE22Q8NFJ8 381 aaPredicted RBP4.26□□□□□ -1.73
SLIRP-208ENST00000556956 ZNF594Q96JF6 807 aaPredicted RBP4.26□□□□□ -1.73
SLIRP-208ENST00000556956 HINFPQ9BQA5 517 aa4.26□□□□□ -1.73
SLIRP-208ENST00000556956 ZNF777Q9ULD5 760 aaPredicted RBP4.26□□□□□ -1.73
SLIRP-208ENST00000556956 UNC13AQ9UPW8 1703 aa4.26□□□□□ -1.73
SLIRP-208ENST00000556956 SFI1A8K8P3 1242 aa4.25□□□□□ -1.73
SLIRP-208ENST00000556956 ZBTB42B2RXF5 422 aa4.25□□□□□ -1.73
SLIRP-208ENST00000556956 BIN1O00499 593 aa4.25□□□□□ -1.73
SLIRP-208ENST00000556956 PPP1R12BO60237 982 aaPredicted RBP4.25□□□□□ -1.73
SLIRP-208ENST00000556956 RFX1P22670 979 aa4.25□□□□□ -1.73
SLIRP-208ENST00000556956 HIRAP54198 1017 aaPredicted RBP4.25□□□□□ -1.73
SLIRP-208ENST00000556956 EPHA4P54764 986 aa4.25□□□□□ -1.73
SLIRP-208ENST00000556956 ELMSAN1Q6PJG2 1045 aa4.25□□□□□ -1.73
SLIRP-208ENST00000556956 BEND4Q6ZU67 534 aa4.25□□□□□ -1.73
SLIRP-208ENST00000556956 SHISA5Q8N114 240 aa4.25□□□□□ -1.73
SLIRP-208ENST00000556956 STAG2Q8N3U4 1231 aa4.25□□□□□ -1.73
SLIRP-208ENST00000556956 CEP41Q9BYV8 373 aa4.25□□□□□ -1.73
SLIRP-208ENST00000556956 ZMYND15Q9H091 742 aa4.25□□□□□ -1.73
SLIRP-208ENST00000556956 TMPRSS5Q9H3S3 457 aa4.25□□□□□ -1.73
SLIRP-208ENST00000556956 FAM53CQ9NYF3 392 aa4.25□□□□□ -1.73
SLIRP-208ENST00000556956 ATAD2Q6PL18 1390 aa4.25□□□□□ -1.73
SLIRP-208ENST00000556956 F13BP05160 661 aa4.24□□□□□ -1.73
SLIRP-208ENST00000556956 KANK4Q5T7N3 995 aaPredicted RBP4.24□□□□□ -1.73
SLIRP-208ENST00000556956 ANKMY2Q8IV38 441 aa4.24□□□□□ -1.73
SLIRP-208ENST00000556956 FAM200AQ8TCP9 573 aa4.24□□□□□ -1.73
SLIRP-208ENST00000556956 RHPN1Q8TCX5 695 aa4.24□□□□□ -1.73
SLIRP-208ENST00000556956 TMEM40Q8WWA1 233 aa4.24□□□□□ -1.73
SLIRP-208ENST00000556956 TTC9Q92623 222 aa4.24□□□□□ -1.73
SLIRP-208ENST00000556956 KCNF1Q9H3M0 494 aa4.24□□□□□ -1.73
SLIRP-208ENST00000556956 NACADO15069 1562 aa4.23□□□□□ -1.73
SLIRP-208ENST00000556956 BMP3P12645 472 aa4.23□□□□□ -1.73
SLIRP-208ENST00000556956 NFKB1P19838 968 aa4.23□□□□□ -1.73
SLIRP-208ENST00000556956 MLLT1Q03111 559 aaPredicted RBP4.23□□□□□ -1.73
SLIRP-208ENST00000556956 DPYDQ12882 1025 aa4.23□□□□□ -1.73
SLIRP-208ENST00000556956 PTK7Q13308 1070 aa4.23□□□□□ -1.73
SLIRP-208ENST00000556956 ZNF792Q3KQV3 632 aa4.23□□□□□ -1.73
SLIRP-208ENST00000556956 SH3PXD2AQ5TCZ1 1133 aa4.23□□□□□ -1.73
SLIRP-208ENST00000556956 FAM9AQ8IZU1 332 aaPredicted RBP4.23□□□□□ -1.73
SLIRP-208ENST00000556956 FBXL6Q8N531 539 aa4.23□□□□□ -1.73
SLIRP-208ENST00000556956 TSEN2Q8NCE0 465 aaKnown RBP4.23□□□□□ -1.73
SLIRP-208ENST00000556956 ZNF280CQ8ND82 737 aa4.23□□□□□ -1.73
SLIRP-208ENST00000556956 SCG3Q8WXD2 468 aaKnown RBP4.23□□□□□ -1.73
SLIRP-208ENST00000556956 VTI1AQ96AJ9 217 aa4.23□□□□□ -1.73
SLIRP-208ENST00000556956 SMG9Q9H0W8 520 aaKnown RBP4.23□□□□□ -1.73
SLIRP-208ENST00000556956 TSPAN10Q9H1Z9 355 aaPredicted RBP4.23□□□□□ -1.73
SLIRP-208ENST00000556956 EFCC1Q9HA90 598 aa4.23□□□□□ -1.73
SLIRP-208ENST00000556956 BSDC1Q9NW68 430 aaPredicted RBP4.23□□□□□ -1.73
SLIRP-208ENST00000556956 KIAA1024Q9UPX6 916 aa4.23□□□□□ -1.73
SLIRP-208ENST00000556956 HCN4Q9Y3Q4 1203 aa4.23□□□□□ -1.73
SLIRP-208ENST00000556956 GTF3C5Q9Y5Q8 519 aaPredicted RBP4.23□□□□□ -1.73
SLIRP-208ENST00000556956 HOXA5P20719 270 aa4.22□□□□□ -1.73
SLIRP-208ENST00000556956 IGFBP4P22692 258 aa4.22□□□□□ -1.73
SLIRP-208ENST00000556956 TBCELQ5QJ74 424 aa4.22□□□□□ -1.73
SLIRP-208ENST00000556956 POTEAQ6S8J7 498 aa4.22□□□□□ -1.73
SLIRP-208ENST00000556956 ACAD11Q709F0 780 aa4.22□□□□□ -1.73
SLIRP-208ENST00000556956 ERICH6Q7L0X2 663 aa4.22□□□□□ -1.73
SLIRP-208ENST00000556956 CHMP7Q8WUX9 453 aaPredicted RBP4.22□□□□□ -1.73
Retrieved 100 of 20,778 RNA–protein pairs in 19.1 ms