RNA–Protein interactions for RNA: ENST00000556353.1

PRPF39-209, Transcript of pre-mRNA processing factor 39, humanhuman

TSL 2

Gene PRPF39, Length 687 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF39-209ENST00000556353 RPLP1P05386 114 aaKnown RBP10.1□□□□□ -0.79
PRPF39-209ENST00000556353 PCSK2P16519 638 aa10.1□□□□□ -0.79
PRPF39-209ENST00000556353 DOC2BQ14184 412 aa10.1□□□□□ -0.79
PRPF39-209ENST00000556353 ABI2Q9NYB9 513 aaPredicted RBP10.1□□□□□ -0.79
PRPF39-209ENST00000556353 CARNS1A5YM72 827 aa10.09□□□□□ -0.79
PRPF39-209ENST00000556353 SELPP16109 830 aa10.09□□□□□ -0.79
PRPF39-209ENST00000556353 HYAL2Q12891 473 aa10.09□□□□□ -0.79
PRPF39-209ENST00000556353 PDE12Q6L8Q7 609 aaKnown RBP10.09□□□□□ -0.79
PRPF39-209ENST00000556353 EDEM1Q92611 657 aa10.09□□□□□ -0.79
PRPF39-209ENST00000556353 MPSTP25325 297 aa10.08□□□□□ -0.8
PRPF39-209ENST00000556353 NRG1Q02297 640 aaPredicted RBP10.08□□□□□ -0.8
PRPF39-209ENST00000556353 DNM1Q05193 864 aaKnown RBP10.08□□□□□ -0.8
PRPF39-209ENST00000556353 ZNF438Q7Z4V0 828 aa10.08□□□□□ -0.8
PRPF39-209ENST00000556353 LENG1Q96BZ8 264 aaPredicted RBP10.08□□□□□ -0.8
PRPF39-209ENST00000556353 SPACA7Q96KW9 195 aa10.08□□□□□ -0.8
PRPF39-209ENST00000556353 ARID3AQ99856 593 aa10.08□□□□□ -0.8
PRPF39-209ENST00000556353 USTQ9Y2C2 406 aa10.08□□□□□ -0.8
PRPF39-209ENST00000556353 SUPT5HO00267 1087 aaKnown RBP10.07□□□□□ -0.8
PRPF39-209ENST00000556353 EIF1AXP47813 144 aaKnown RBP10.07□□□□□ -0.8
PRPF39-209ENST00000556353 MTMR3Q13615 1198 aa10.07□□□□□ -0.8
PRPF39-209ENST00000556353 GDF6Q6KF10 455 aaPredicted RBP10.07□□□□□ -0.8
PRPF39-209ENST00000556353 ALKBH2Q6NS38 261 aa10.07□□□□□ -0.8
PRPF39-209ENST00000556353 PHLDB3Q6NSJ2 640 aa10.07□□□□□ -0.8
PRPF39-209ENST00000556353 SHISA2Q6UWI4 295 aa10.07□□□□□ -0.8
PRPF39-209ENST00000556353 FBXO11Q86XK2 927 aa10.07□□□□□ -0.8
PRPF39-209ENST00000556353 TTC16Q8NEE8 873 aa10.07□□□□□ -0.8
PRPF39-209ENST00000556353 ELP3Q9H9T3 547 aa10.07□□□□□ -0.8
PRPF39-209ENST00000556353 MZF1P28698 734 aaPredicted RBP10.06□□□□□ -0.8
PRPF39-209ENST00000556353 ADGRE1Q14246 886 aa10.06□□□□□ -0.8
PRPF39-209ENST00000556353 MBTPS1Q14703 1052 aa10.06□□□□□ -0.8
PRPF39-209ENST00000556353 USP21Q9UK80 565 aa10.06□□□□□ -0.8
PRPF39-209ENST00000556353 PDGFAP04085 211 aa10.05□□□□□ -0.8
PRPF39-209ENST00000556353 COL13A1Q5TAT6 717 aaPredicted RBP10.05□□□□□ -0.8
PRPF39-209ENST00000556353 B4GALNT3Q6L9W6 998 aa10.05□□□□□ -0.8
PRPF39-209ENST00000556353 IL22RA1Q8N6P7 574 aa10.05□□□□□ -0.8
PRPF39-209ENST00000556353 TMEM63CQ9P1W3 806 aa10.05□□□□□ -0.8
PRPF39-209ENST00000556353 FAM13AO94988 1023 aa10.04□□□□□ -0.8
PRPF39-209ENST00000556353 SF3B2Q13435 895 aaKnown RBP10.04□□□□□ -0.8
PRPF39-209ENST00000556353 AAMPQ13685 434 aa10.04□□□□□ -0.8
PRPF39-209ENST00000556353 C8orf34Q49A92 452 aa10.04□□□□□ -0.8
PRPF39-209ENST00000556353 CACTIN-AS1Q8N1I8 211 aa10.04□□□□□ -0.8
PRPF39-209ENST00000556353 TPSG1Q9NRR2 321 aa10.04□□□□□ -0.8
PRPF39-209ENST00000556353 TRIM33Q9UPN9 1127 aa10.04□□□□□ -0.8
PRPF39-209ENST00000556353 SMNDC1O75940 238 aaKnown RBP eCLIP10.03□□□□□ -0.8
PRPF39-209ENST00000556353 KIF4AO95239 1232 aa10.03□□□□□ -0.8
PRPF39-209ENST00000556353 ABL1P00519 1130 aa10.03□□□□□ -0.8
PRPF39-209ENST00000556353 CYP2E1P05181 493 aaPredicted RBP10.03□□□□□ -0.8
PRPF39-209ENST00000556353 XKR5Q6UX68 686 aa10.03□□□□□ -0.8
PRPF39-209ENST00000556353 TXNRD3Q86VQ6 643 aa10.03□□□□□ -0.8
PRPF39-209ENST00000556353 NCAPG2Q86XI2 1143 aa10.03□□□□□ -0.8
PRPF39-209ENST00000556353 DEAF1O75398 565 aaPredicted RBP10.02□□□□□ -0.81
PRPF39-209ENST00000556353 NPR3P17342 541 aa10.02□□□□□ -0.81
PRPF39-209ENST00000556353 MUC3BQ9H195 1237 aa10.02□□□□□ -0.81
PRPF39-209ENST00000556353 GGNBP2Q9H3C7 697 aa10.02□□□□□ -0.81
PRPF39-209ENST00000556353 ATP11AP98196 1134 aa10.01□□□□□ -0.81
PRPF39-209ENST00000556353 FKBP4Q02790 459 aaKnown RBP eCLIP10.01□□□□□ -0.81
PRPF39-209ENST00000556353 CEP135Q66GS9 1140 aa10.01□□□□□ -0.81
PRPF39-209ENST00000556353 IGF2-ASQ6U949 168 aa10.01□□□□□ -0.81
PRPF39-209ENST00000556353 SEMA6BQ9H3T3 888 aa10.01□□□□□ -0.81
PRPF39-209ENST00000556353 SRA1Q9HD15 236 aaKnown RBP10.01□□□□□ -0.81
PRPF39-209ENST00000556353 CNTN3Q9P232 1028 aa10.01□□□□□ -0.81
PRPF39-209ENST00000556353 POLIQ9UNA4 740 aa10.01□□□□□ -0.81
PRPF39-209ENST00000556353 MAP4K3Q8IVH8 894 aa10□□□□□ -0.81
PRPF39-209ENST00000556353 DCAF11Q8TEB1 546 aa10□□□□□ -0.81
PRPF39-209ENST00000556353 RASSF4Q9H2L5 321 aa10□□□□□ -0.81
PRPF39-209ENST00000556353 KANSL3Q9P2N6 904 aa10□□□□□ -0.81
PRPF39-209ENST00000556353 PPME1Q9Y570 386 aa10□□□□□ -0.81
PRPF39-209ENST00000556353 A6NHS1 94 aa9.99□□□□□ -0.81
PRPF39-209ENST00000556353 CES1P23141 567 aa9.99□□□□□ -0.81
PRPF39-209ENST00000556353 USP5P45974 858 aa9.99□□□□□ -0.81
PRPF39-209ENST00000556353 ZNF211Q13398 564 aaPredicted RBP9.99□□□□□ -0.81
PRPF39-209ENST00000556353 RSPO4Q2I0M5 234 aaPredicted RBP9.99□□□□□ -0.81
PRPF39-209ENST00000556353 CEP120Q8N960 986 aa9.99□□□□□ -0.81
PRPF39-209ENST00000556353 PBX4Q9BYU1 374 aa9.99□□□□□ -0.81
PRPF39-209ENST00000556353 LACRTQ9GZZ8 138 aa9.99□□□□□ -0.81
PRPF39-209ENST00000556353 ANO2Q9NQ90 1003 aa9.99□□□□□ -0.81
PRPF39-209ENST00000556353 LOC100996750A0A140TA64 210 aa9.98□□□□□ -0.81
PRPF39-209ENST00000556353 DLL1O00548 723 aa9.98□□□□□ -0.81
PRPF39-209ENST00000556353 NKAPLQ5M9Q1 402 aa9.98□□□□□ -0.81
PRPF39-209ENST00000556353 C1orf127Q8N9H9 656 aa9.98□□□□□ -0.81
PRPF39-209ENST00000556353 PMEPA1Q969W9 287 aa9.98□□□□□ -0.81
PRPF39-209ENST00000556353 KRTAP4-6Q9BYQ5 205 aa9.98□□□□□ -0.81
PRPF39-209ENST00000556353 TIMELESSQ9UNS1 1208 aa9.98□□□□□ -0.81
PRPF39-209ENST00000556353 CDC27P30260 824 aa9.97□□□□□ -0.81
PRPF39-209ENST00000556353 EHHADHQ08426 723 aa9.97□□□□□ -0.81
PRPF39-209ENST00000556353 SETDB1Q15047 1291 aa9.97□□□□□ -0.81
PRPF39-209ENST00000556353 SALL4Q9UJQ4 1053 aa9.97□□□□□ -0.81
PRPF39-209ENST00000556353 FAM177BA6PVY3 158 aa9.96□□□□□ -0.82
PRPF39-209ENST00000556353 WFDC12Q8WWY7 111 aa9.96□□□□□ -0.82
PRPF39-209ENST00000556353 EGFL7Q9UHF1 273 aa9.96□□□□□ -0.82
PRPF39-209ENST00000556353 FZD6O60353 706 aa9.95□□□□□ -0.82
PRPF39-209ENST00000556353 PTPRAP18433 802 aa9.95□□□□□ -0.82
PRPF39-209ENST00000556353 IREB2P48200 963 aaKnown RBP9.95□□□□□ -0.82
PRPF39-209ENST00000556353 PDE4CQ08493 712 aa9.95□□□□□ -0.82
PRPF39-209ENST00000556353 MRPL18Q9H0U6 180 aaKnown RBP9.95□□□□□ -0.82
PRPF39-209ENST00000556353 LINC01387J3KSC0 135 aa9.94□□□□□ -0.82
PRPF39-209ENST00000556353 DYRK3O43781 588 aa9.94□□□□□ -0.82
PRPF39-209ENST00000556353 RETREG2Q8NC44 543 aa9.94□□□□□ -0.82
PRPF39-209ENST00000556353 SNX29Q8TEQ0 813 aa9.94□□□□□ -0.82
PRPF39-209ENST00000556353 CHRDQ9H2X0 955 aa9.94□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 14.8 ms