RNA–Protein interactions for RNA: ENST00000556063.1

TDP1-214, Transcript of tyrosyl-DNA phosphodiesterase 1, humanhuman

TSL 1 (best)

Gene TDP1, Length 1,076 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1-214ENST00000556063 CACNA1SQ13698 1873 aa9.48□□□□□ -0.89
TDP1-214ENST00000556063 ARFGEF1Q9Y6D6 1849 aa9.47□□□□□ -0.89
TDP1-214ENST00000556063 TAF1P21675 1872 aa9.47□□□□□ -0.89
TDP1-214ENST00000556063 EYA2O00167 538 aa9.47□□□□□ -0.89
TDP1-214ENST00000556063 CIAO1O76071 339 aa9.47□□□□□ -0.89
TDP1-214ENST00000556063 RFX5P48382 616 aaPredicted RBP9.47□□□□□ -0.89
TDP1-214ENST00000556063 IRX6P78412 446 aaPredicted RBP9.47□□□□□ -0.89
TDP1-214ENST00000556063 POLA2Q14181 598 aa9.47□□□□□ -0.89
TDP1-214ENST00000556063 MPNDQ8N594 471 aa9.47□□□□□ -0.89
TDP1-214ENST00000556063 SUPT20HQ8NEM7 779 aa9.47□□□□□ -0.89
TDP1-214ENST00000556063 SSH3Q8TE77 659 aa9.47□□□□□ -0.89
TDP1-214ENST00000556063 C7orf43Q8WVR3 580 aa9.47□□□□□ -0.89
TDP1-214ENST00000556063 ZNF594Q96JF6 807 aaPredicted RBP9.47□□□□□ -0.89
TDP1-214ENST00000556063 ANKIB1Q9P2G1 1089 aa9.47□□□□□ -0.89
TDP1-214ENST00000556063 NSFL1CQ9UNZ2 370 aaKnown RBP9.47□□□□□ -0.89
TDP1-214ENST00000556063 MROH5Q6ZUA9 1318 aa9.47□□□□□ -0.89
TDP1-214ENST00000556063 PNMA6EA0A0J9YXQ4 647 aa9.46□□□□□ -0.9
TDP1-214ENST00000556063 SURF6O75683 361 aaKnown RBP9.46□□□□□ -0.9
TDP1-214ENST00000556063 ATP2B4P23634 1241 aa9.46□□□□□ -0.9
TDP1-214ENST00000556063 IL15P40933 162 aaPredicted RBP9.46□□□□□ -0.9
TDP1-214ENST00000556063 KCNJ4P48050 445 aa9.46□□□□□ -0.9
TDP1-214ENST00000556063 PTPN12Q05209 780 aaKnown RBP9.46□□□□□ -0.9
TDP1-214ENST00000556063 DPP8Q6V1X1 898 aaPredicted RBP9.46□□□□□ -0.9
TDP1-214ENST00000556063 ARHGAP27Q6ZUM4 889 aa9.46□□□□□ -0.9
TDP1-214ENST00000556063 ERC1Q8IUD2 1116 aa9.46□□□□□ -0.9
TDP1-214ENST00000556063 RWDD1Q9H446 243 aaPredicted RBP9.46□□□□□ -0.9
TDP1-214ENST00000556063 CEP126Q9P2H0 1117 aa9.46□□□□□ -0.9
TDP1-214ENST00000556063 MINPP1Q9UNW1 487 aa9.46□□□□□ -0.9
TDP1-214ENST00000556063 XDHP47989 1333 aa9.46□□□□□ -0.9
TDP1-214ENST00000556063 CHRNDQ07001 517 aa9.45□□□□□ -0.9
TDP1-214ENST00000556063 METTL24Q5JXM2 366 aa9.45□□□□□ -0.9
TDP1-214ENST00000556063 ERICH6BQ5W0A0 696 aa9.45□□□□□ -0.9
TDP1-214ENST00000556063 KLHDC4Q8TBB5 520 aa9.45□□□□□ -0.9
TDP1-214ENST00000556063 EYA3Q99504 573 aa9.45□□□□□ -0.9
TDP1-214ENST00000556063 SIL1Q9H173 461 aa9.45□□□□□ -0.9
TDP1-214ENST00000556063 VPS33BQ9H267 617 aa9.45□□□□□ -0.9
TDP1-214ENST00000556063 TAOK3Q9H2K8 898 aa9.45□□□□□ -0.9
TDP1-214ENST00000556063 PODXL2Q9NZ53 605 aa9.45□□□□□ -0.9
TDP1-214ENST00000556063 ZBTB47Q9UFB7 747 aaPredicted RBP9.45□□□□□ -0.9
TDP1-214ENST00000556063 GGA1Q9UJY5 639 aa9.45□□□□□ -0.9
TDP1-214ENST00000556063 LEMD3Q9Y2U8 911 aa9.45□□□□□ -0.9
TDP1-214ENST00000556063 NOP58Q9Y2X3 529 aaKnown RBP9.45□□□□□ -0.9
TDP1-214ENST00000556063 RIPOR2Q9Y4F9 1068 aa9.45□□□□□ -0.9
TDP1-214ENST00000556063 SPEF2Q9C093 1822 aa9.45□□□□□ -0.9
TDP1-214ENST00000556063 C6orf229H3BNL8 230 aa9.44□□□□□ -0.9
TDP1-214ENST00000556063 RAB11FIP3O75154 756 aa9.44□□□□□ -0.9
TDP1-214ENST00000556063 CAPN15O75808 1086 aa9.44□□□□□ -0.9
TDP1-214ENST00000556063 YBX3P16989 372 aaKnown RBP eCLIP9.44□□□□□ -0.9
TDP1-214ENST00000556063 GPSM2P81274 684 aa9.44□□□□□ -0.9
TDP1-214ENST00000556063 FKBP4Q02790 459 aaKnown RBP eCLIP9.44□□□□□ -0.9
TDP1-214ENST00000556063 PSMD1Q99460 953 aa9.44□□□□□ -0.9
TDP1-214ENST00000556063 PUS3Q9BZE2 481 aaKnown RBP9.44□□□□□ -0.9
TDP1-214ENST00000556063 PA2G4Q9UQ80 394 aaKnown RBP9.44□□□□□ -0.9
TDP1-214ENST00000556063 AKAP2Q9Y2D5 859 aa9.44□□□□□ -0.9
TDP1-214ENST00000556063 PCDHB15Q9Y5E8 787 aa9.44□□□□□ -0.9
TDP1-214ENST00000556063 LTBP3Q9NS15 1303 aa9.44□□□□□ -0.9
TDP1-214ENST00000556063 LRRC37AA6NMS7 1700 aa9.43□□□□□ -0.9
TDP1-214ENST00000556063 G3V3G9 751 aa9.43□□□□□ -0.9
TDP1-214ENST00000556063 UFL1O94874 794 aa9.43□□□□□ -0.9
TDP1-214ENST00000556063 PDE8BO95263 885 aa9.43□□□□□ -0.9
TDP1-214ENST00000556063 IFIT1P09914 478 aaKnown RBP9.43□□□□□ -0.9
TDP1-214ENST00000556063 HDAC1Q13547 482 aaPredicted RBP9.43□□□□□ -0.9
TDP1-214ENST00000556063 UBE4AQ14139 1066 aa9.43□□□□□ -0.9
TDP1-214ENST00000556063 LRRC24Q50LG9 513 aa9.43□□□□□ -0.9
TDP1-214ENST00000556063 DCAF8Q5TAQ9 597 aa9.43□□□□□ -0.9
TDP1-214ENST00000556063 SIRT2Q8IXJ6 389 aa9.43□□□□□ -0.9
TDP1-214ENST00000556063 RTFDC1Q9BY42 306 aaPredicted RBP9.43□□□□□ -0.9
TDP1-214ENST00000556063 ZC3H12CQ9C0D7 883 aaKnown RBP9.43□□□□□ -0.9
TDP1-214ENST00000556063 FER1L6Q2WGJ9 1857 aa9.42□□□□□ -0.9
TDP1-214ENST00000556063 ZNF804BA4D1E1 1349 aa9.42□□□□□ -0.9
TDP1-214ENST00000556063 SLC5A1P13866 664 aa9.42□□□□□ -0.9
TDP1-214ENST00000556063 LMNB1P20700 586 aa9.42□□□□□ -0.9
TDP1-214ENST00000556063 PUM3Q15397 648 aaKnown RBP9.42□□□□□ -0.9
TDP1-214ENST00000556063 WASHC4Q2M389 1173 aa9.42□□□□□ -0.9
TDP1-214ENST00000556063 OLFM4Q6UX06 510 aa9.42□□□□□ -0.9
TDP1-214ENST00000556063 ATG9AQ7Z3C6 839 aa9.42□□□□□ -0.9
TDP1-214ENST00000556063 HELBQ8NG08 1087 aaPredicted RBP9.42□□□□□ -0.9
TDP1-214ENST00000556063 TBC1D16Q8TBP0 767 aa9.42□□□□□ -0.9
TDP1-214ENST00000556063 JDP2Q8WYK2 163 aa9.42□□□□□ -0.9
TDP1-214ENST00000556063 GCC1Q96CN9 775 aa9.42□□□□□ -0.9
TDP1-214ENST00000556063 KIF1BPQ96EK5 621 aa9.42□□□□□ -0.9
TDP1-214ENST00000556063 DCTPP1Q9H773 170 aa9.42□□□□□ -0.9
TDP1-214ENST00000556063 EXOC6BQ9Y2D4 811 aa9.42□□□□□ -0.9
TDP1-214ENST00000556063 U3KPZ7 1027 aaPredicted RBP9.42□□□□□ -0.9
TDP1-214ENST00000556063 NFKBIEO00221 500 aa9.41□□□□□ -0.9
TDP1-214ENST00000556063 PPIP5K2O43314 1243 aa9.41□□□□□ -0.9
TDP1-214ENST00000556063 TAF5LO75529 589 aa9.41□□□□□ -0.9
TDP1-214ENST00000556063 IARSP41252 1262 aaKnown RBP9.41□□□□□ -0.9
TDP1-214ENST00000556063 ATP2B3Q16720 1220 aa9.41□□□□□ -0.9
TDP1-214ENST00000556063 CAVIN4Q5BKX8 364 aa9.41□□□□□ -0.9
TDP1-214ENST00000556063 VPS37DQ86XT2 251 aa9.41□□□□□ -0.9
TDP1-214ENST00000556063 CLASRPQ8N2M8 674 aaKnown RBP9.41□□□□□ -0.9
TDP1-214ENST00000556063 LARGE2Q8N3Y3 721 aa9.41□□□□□ -0.9
TDP1-214ENST00000556063 LPIN2Q92539 896 aa9.41□□□□□ -0.9
TDP1-214ENST00000556063 GPR108Q9NPR9 543 aa9.41□□□□□ -0.9
TDP1-214ENST00000556063 POLLQ9UGP5 575 aa9.41□□□□□ -0.9
TDP1-214ENST00000556063 COL4A1P02462 1669 aa9.4□□□□□ -0.9
TDP1-214ENST00000556063 KIAA2012Q0VF49 1180 aa9.4□□□□□ -0.9
TDP1-214ENST00000556063 TFCP2Q12800 502 aa9.4□□□□□ -0.9
TDP1-214ENST00000556063 GORABQ5T7V8 394 aa9.4□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 18.8 ms