RNA–Protein interactions for RNA: ENST00000554439.5

PRPF39-207, Transcript of pre-mRNA processing factor 39, humanhuman

TSL 5

Gene PRPF39, Length 2,982 nt, Biotype nonsense mediated decay.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF39-207ENST00000554439 SMC4Q9NTJ3 1288 aa3.18□□□□□ -1.9
PRPF39-207ENST00000554439 DCTN4Q9UJW0 460 aa3.18□□□□□ -1.9
PRPF39-207ENST00000554439 SPHKAPQ2M3C7 1700 aa3.18□□□□□ -1.9
PRPF39-207ENST00000554439 POLR3AO14802 1390 aaPredicted RBP3.18□□□□□ -1.9
PRPF39-207ENST00000554439 SCAPERQ9BY12 1400 aa3.18□□□□□ -1.9
PRPF39-207ENST00000554439 IQSEC2Q5JU85 1478 aa3.18□□□□□ -1.9
PRPF39-207ENST00000554439 HSP90AB1P08238 724 aaKnown RBP3.18□□□□□ -1.9
PRPF39-207ENST00000554439 U2AF1L5P0DN76 240 aaPredicted RBP3.18□□□□□ -1.9
PRPF39-207ENST00000554439 BAG6P46379 1132 aa3.18□□□□□ -1.9
PRPF39-207ENST00000554439 RBM10P98175 930 aaKnown RBP3.18□□□□□ -1.9
PRPF39-207ENST00000554439 U2AF1Q01081 240 aaKnown RBP eCLIP3.18□□□□□ -1.96e-6■■■□□ 14.7
PRPF39-207ENST00000554439 EXOSC9Q06265 439 aaKnown RBP3.18□□□□□ -1.9
PRPF39-207ENST00000554439 ZKSCAN2Q63HK3 967 aa3.18□□□□□ -1.9
PRPF39-207ENST00000554439 TRIM46Q7Z4K8 759 aa3.18□□□□□ -1.9
PRPF39-207ENST00000554439 ZBTB33Q86T24 672 aa3.18□□□□□ -1.9
PRPF39-207ENST00000554439 FAM177A1Q8N128 213 aaPredicted RBP3.18□□□□□ -1.9
PRPF39-207ENST00000554439 AFAP1Q8N556 730 aa3.18□□□□□ -1.9
PRPF39-207ENST00000554439 TMEM57Q8N5G2 664 aa3.18□□□□□ -1.9
PRPF39-207ENST00000554439 TSEN2Q8NCE0 465 aaKnown RBP3.18□□□□□ -1.9
PRPF39-207ENST00000554439 SSH1Q8WYL5 1049 aa3.18□□□□□ -1.9
PRPF39-207ENST00000554439 TRIM44Q96DX7 344 aaPredicted RBP3.18□□□□□ -1.9
PRPF39-207ENST00000554439 KIF2CQ99661 725 aa3.18□□□□□ -1.9
PRPF39-207ENST00000554439 MKNK1Q9BUB5 465 aa3.18□□□□□ -1.9
PRPF39-207ENST00000554439 NOB1Q9ULX3 412 aaKnown RBP3.18□□□□□ -1.9
PRPF39-207ENST00000554439 TRAK1Q9UPV9 953 aa3.18□□□□□ -1.9
PRPF39-207ENST00000554439 DUOX2Q9NRD8 1548 aa3.18□□□□□ -1.9
PRPF39-207ENST00000554439 NPR3P17342 541 aa3.18□□□□□ -1.9
PRPF39-207ENST00000554439 MRPL58Q14197 206 aaKnown RBP3.18□□□□□ -1.9
PRPF39-207ENST00000554439 ERFEQ4G0M1 354 aa3.18□□□□□ -1.9
PRPF39-207ENST00000554439 WDR63Q8IWG1 891 aa3.18□□□□□ -1.9
PRPF39-207ENST00000554439 PUS7Q96PZ0 661 aaKnown RBP3.18□□□□□ -1.9
PRPF39-207ENST00000554439 ENAMQ9NRM1 1142 aa3.18□□□□□ -1.9
PRPF39-207ENST00000554439 TRAPPC8Q9Y2L5 1435 aa3.18□□□□□ -1.9
PRPF39-207ENST00000554439 FKBP4Q02790 459 aaKnown RBP eCLIP3.17□□□□□ -1.9
PRPF39-207ENST00000554439 COL19A1Q14993 1142 aa3.17□□□□□ -1.9
PRPF39-207ENST00000554439 RAB3GAP1Q15042 981 aa3.17□□□□□ -1.9
PRPF39-207ENST00000554439 TMEM132EQ6IEE7 984 aa3.17□□□□□ -1.9
PRPF39-207ENST00000554439 KIAA1211Q6ZU35 1233 aa3.17□□□□□ -1.9
PRPF39-207ENST00000554439 DZIP3Q86Y13 1208 aaKnown RBP3.17□□□□□ -1.9
PRPF39-207ENST00000554439 RGL4Q8IZJ4 473 aa3.17□□□□□ -1.9
PRPF39-207ENST00000554439 NGEFQ8N5V2 710 aa3.17□□□□□ -1.9
PRPF39-207ENST00000554439 DCAF5Q96JK2 942 aa3.17□□□□□ -1.9
PRPF39-207ENST00000554439 NCOA3Q9Y6Q9 1424 aa3.17□□□□□ -1.9
PRPF39-207ENST00000554439 ERCC6Q03468 1493 aa3.17□□□□□ -1.9
PRPF39-207ENST00000554439 TRPM2O94759 1503 aa3.17□□□□□ -1.9
PRPF39-207ENST00000554439 PTPRTO14522 1441 aa3.17□□□□□ -1.9
PRPF39-207ENST00000554439 MAGEB6P1A0A0J9YX57 407 aa3.17□□□□□ -1.9
PRPF39-207ENST00000554439 M0R2N6 131 aa3.17□□□□□ -1.9
PRPF39-207ENST00000554439 U2SURPO15042 1029 aaKnown RBP3.17□□□□□ -1.9
PRPF39-207ENST00000554439 COBLO75128 1261 aa3.17□□□□□ -1.9
PRPF39-207ENST00000554439 TXKP42681 527 aa3.17□□□□□ -1.9
PRPF39-207ENST00000554439 HDAC1Q13547 482 aaPredicted RBP3.17□□□□□ -1.9
PRPF39-207ENST00000554439 ATF7IPQ6VMQ6 1270 aa3.17□□□□□ -1.9
PRPF39-207ENST00000554439 SMC5Q8IY18 1101 aa3.17□□□□□ -1.9
PRPF39-207ENST00000554439 FOXJ1Q92949 421 aa3.17□□□□□ -1.9
PRPF39-207ENST00000554439 CHAMP1Q96JM3 812 aa3.17□□□□□ -1.9
PRPF39-207ENST00000554439 ABCA6Q8N139 1617 aa3.16□□□□□ -1.9
PRPF39-207ENST00000554439 ZNF518AQ6AHZ1 1483 aa3.16□□□□□ -1.9
PRPF39-207ENST00000554439 ZMYM3Q14202 1370 aa3.16□□□□□ -1.9
PRPF39-207ENST00000554439 IGHA2P01877 340 aa3.16□□□□□ -1.9
PRPF39-207ENST00000554439 P4HBP07237 508 aaKnown RBP3.16□□□□□ -1.9
PRPF39-207ENST00000554439 NASPP49321 788 aaPredicted RBP3.16□□□□□ -1.9
PRPF39-207ENST00000554439 ZC3H6P61129 1189 aaKnown RBP3.16□□□□□ -1.9
PRPF39-207ENST00000554439 NUCB1Q02818 461 aa3.16□□□□□ -1.9
PRPF39-207ENST00000554439 AAMPQ13685 434 aa3.16□□□□□ -1.9
PRPF39-207ENST00000554439 PKP1Q13835 747 aa3.16□□□□□ -1.9
PRPF39-207ENST00000554439 SAFB2Q14151 953 aaKnown RBP eCLIP3.16□□□□□ -1.9
PRPF39-207ENST00000554439 SCARF1Q14162 830 aa3.16□□□□□ -1.9
PRPF39-207ENST00000554439 COL26A1Q96A83 441 aa3.16□□□□□ -1.9
PRPF39-207ENST00000554439 DRC1Q96MC2 740 aa3.16□□□□□ -1.9
PRPF39-207ENST00000554439 HINFPQ9BQA5 517 aa3.16□□□□□ -1.9
PRPF39-207ENST00000554439 ZBTB40Q9NUA8 1239 aa3.16□□□□□ -1.9
PRPF39-207ENST00000554439 CFAP65Q6ZU64 1925 aaKnown RBP3.16□□□□□ -1.9
PRPF39-207ENST00000554439 CD109Q6YHK3 1445 aa3.16□□□□□ -1.9
PRPF39-207ENST00000554439 J3QL48 77 aa3.16□□□□□ -1.9
PRPF39-207ENST00000554439 KIF3BO15066 747 aa3.16□□□□□ -1.9
PRPF39-207ENST00000554439 NCLP19338 710 aaKnown RBP3.16□□□□□ -1.9
PRPF39-207ENST00000554439 RIPK4P57078 832 aa3.16□□□□□ -1.9
PRPF39-207ENST00000554439 SF3B2Q13435 895 aaKnown RBP3.16□□□□□ -1.9
PRPF39-207ENST00000554439 NAA30Q147X3 362 aaPredicted RBP3.16□□□□□ -1.9
PRPF39-207ENST00000554439 ANKRD45Q5TZF3 282 aa3.16□□□□□ -1.9
PRPF39-207ENST00000554439 TMC7Q7Z402 723 aa3.16□□□□□ -1.9
PRPF39-207ENST00000554439 CHD1LQ86WJ1 897 aa3.16□□□□□ -1.9
PRPF39-207ENST00000554439 CCDC125Q86Z20 511 aa3.16□□□□□ -1.9
PRPF39-207ENST00000554439 SVOPQ8N4V2 548 aa3.16□□□□□ -1.9
PRPF39-207ENST00000554439 SERBP1Q8NC51 408 aaKnown RBP eCLIP3.16□□□□□ -1.9
PRPF39-207ENST00000554439 SREK1Q8WXA9 508 aaKnown RBP3.16□□□□□ -1.9
PRPF39-207ENST00000554439 BAP1Q92560 729 aa3.16□□□□□ -1.9
PRPF39-207ENST00000554439 SNX21Q969T3 373 aa3.16□□□□□ -1.9
PRPF39-207ENST00000554439 GBP4Q96PP9 640 aa3.16□□□□□ -1.9
PRPF39-207ENST00000554439 DDX19BQ9UMR2 479 aa3.16□□□□□ -1.9
PRPF39-207ENST00000554439 SPAG9O60271 1321 aaKnown RBP3.15□□□□□ -1.9
PRPF39-207ENST00000554439 TMEM229AB2RXF0 380 aa3.15□□□□□ -1.9
PRPF39-207ENST00000554439 CAPN5O15484 640 aaPredicted RBP3.15□□□□□ -1.9
PRPF39-207ENST00000554439 PTCD1O75127 700 aaKnown RBP3.15□□□□□ -1.9
PRPF39-207ENST00000554439 FBLN1P23142 703 aa3.15□□□□□ -1.9
PRPF39-207ENST00000554439 TMPOP42166 694 aaKnown RBP3.15□□□□□ -1.9
PRPF39-207ENST00000554439 SCTRP47872 440 aa3.15□□□□□ -1.9
PRPF39-207ENST00000554439 USP4Q13107 963 aa3.15□□□□□ -1.9
PRPF39-207ENST00000554439 TSNAXIP1Q2TAA8 658 aa3.15□□□□□ -1.9
Retrieved 100 of 20,778 RNA–protein pairs in 12.5 ms