RNA–Protein interactions for RNA: ENST00000554258.1

NEK9-204, Transcript of NIMA related kinase 9, humanhuman

TSL 3

Gene NEK9, Length 578 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEK9-204ENST00000554258 GRAPLQ8TC17 118 aaPredicted RBP22.41■■□□□ 1.18
NEK9-204ENST00000554258 UTP14AQ9BVJ6 771 aaKnown RBP22.41■■□□□ 1.18
NEK9-204ENST00000554258 RRP7AQ9Y3A4 280 aaKnown RBP22.41■■□□□ 1.18
NEK9-204ENST00000554258 TCIRG1Q13488 830 aa22.4■■□□□ 1.18
NEK9-204ENST00000554258 ERO1AQ96HE7 468 aa22.4■■□□□ 1.18
NEK9-204ENST00000554258 LAMA3Q16787 3333 aa22.4■■□□□ 1.18
NEK9-204ENST00000554258 UNC80Q8N2C7 3258 aa22.39■■□□□ 1.18
NEK9-204ENST00000554258 PITPNM2Q9BZ72 1349 aa22.39■■□□□ 1.18
NEK9-204ENST00000554258 C6orf229H3BNL8 230 aa22.39■■□□□ 1.17
NEK9-204ENST00000554258 MYL6BP14649 208 aa22.39■■□□□ 1.17
NEK9-204ENST00000554258 GIGYF2Q6Y7W6 1299 aaKnown RBP22.39■■□□□ 1.17
NEK9-204ENST00000554258 TMC4Q7Z404 712 aa22.39■■□□□ 1.17
NEK9-204ENST00000554258 SCAF8Q9UPN6 1271 aaKnown RBP22.39■■□□□ 1.17
NEK9-204ENST00000554258 VIL1P09327 827 aaKnown RBP22.38■■□□□ 1.17
NEK9-204ENST00000554258 PRAMEF18Q5VWM3 479 aa22.38■■□□□ 1.17
NEK9-204ENST00000554258 RTF1Q92541 710 aaKnown RBP22.38■■□□□ 1.17
NEK9-204ENST00000554258 NSFL1CQ9UNZ2 370 aaKnown RBP22.38■■□□□ 1.17
NEK9-204ENST00000554258 ZNF609O15014 1411 aa22.38■■□□□ 1.17
NEK9-204ENST00000554258 ZNF280AP59817 542 aaPredicted RBP22.37■■□□□ 1.17
NEK9-204ENST00000554258 SLC4A8Q2Y0W8 1093 aa22.37■■□□□ 1.17
NEK9-204ENST00000554258 MCM10Q7L590 875 aa22.37■■□□□ 1.17
NEK9-204ENST00000554258 CD99L2Q8TCZ2 262 aa22.37■■□□□ 1.17
NEK9-204ENST00000554258 ZNF333Q96JL9 665 aa22.37■■□□□ 1.17
NEK9-204ENST00000554258 EFCC1Q9HA90 598 aa22.37■■□□□ 1.17
NEK9-204ENST00000554258 HCLS1P14317 486 aaPredicted RBP22.36■■□□□ 1.17
NEK9-204ENST00000554258 NF2P35240 595 aa22.36■■□□□ 1.17
NEK9-204ENST00000554258 PHACTR3Q96KR7 559 aa22.36■■□□□ 1.17
NEK9-204ENST00000554258 AMER1Q5JTC6 1135 aaPredicted RBP22.35■■□□□ 1.17
NEK9-204ENST00000554258 EYA3Q99504 573 aa22.35■■□□□ 1.17
NEK9-204ENST00000554258 PTPN12Q05209 780 aaKnown RBP22.34■■□□□ 1.17
NEK9-204ENST00000554258 SPRYD7Q5W111 196 aa22.34■■□□□ 1.17
NEK9-204ENST00000554258 IFNL1Q8IU54 200 aa22.34■■□□□ 1.17
NEK9-204ENST00000554258 POLLQ9UGP5 575 aa22.34■■□□□ 1.17
NEK9-204ENST00000554258 KDM3BQ7LBC6 1761 aa22.34■■□□□ 1.17
NEK9-204ENST00000554258 NBPF11Q86T75 865 aa22.33■■□□□ 1.17
NEK9-204ENST00000554258 DPF3Q92784 378 aa22.33■■□□□ 1.17
NEK9-204ENST00000554258 MYOZ2Q9NPC6 264 aa22.33■■□□□ 1.17
NEK9-204ENST00000554258 MANSC4A6NHS7 340 aaPredicted RBP22.32■■□□□ 1.16
NEK9-204ENST00000554258 G3V3G9 751 aa22.32■■□□□ 1.16
NEK9-204ENST00000554258 PRKAR2BP31323 418 aa22.32■■□□□ 1.16
NEK9-204ENST00000554258 INHBEP58166 350 aa22.32■■□□□ 1.16
NEK9-204ENST00000554258 SLC9C1Q4G0N8 1177 aa22.32■■□□□ 1.16
NEK9-204ENST00000554258 DCAF8Q5TAQ9 597 aa22.32■■□□□ 1.16
NEK9-204ENST00000554258 ARMC9Q7Z3E5 817 aa22.32■■□□□ 1.16
NEK9-204ENST00000554258 AGBL3Q8NEM8 1001 aa22.32■■□□□ 1.16
NEK9-204ENST00000554258 COL3A1P02461 1466 aaPredicted RBP22.32■■□□□ 1.16
NEK9-204ENST00000554258 PSME4Q14997 1843 aa22.31■■□□□ 1.16
NEK9-204ENST00000554258 GPSM2P81274 684 aa22.3■■□□□ 1.16
NEK9-204ENST00000554258 PRKG1Q13976 671 aa22.3■■□□□ 1.16
NEK9-204ENST00000554258 DCTN1Q14203 1278 aa22.3■■□□□ 1.16
NEK9-204ENST00000554258 RSBN1LQ6PCB5 846 aaPredicted RBP22.3■■□□□ 1.16
NEK9-204ENST00000554258 NECTIN2Q92692 538 aa22.3■■□□□ 1.16
NEK9-204ENST00000554258 MIS18AQ9NYP9 233 aa22.3■■□□□ 1.16
NEK9-204ENST00000554258 MYCP01106 439 aaPredicted RBP22.29■■□□□ 1.16
NEK9-204ENST00000554258 USP17L8P0C7I0 530 aa22.29■■□□□ 1.16
NEK9-204ENST00000554258 TAF7Q15545 349 aaPredicted RBP22.29■■□□□ 1.16
NEK9-204ENST00000554258 ZC3H12CQ9C0D7 883 aaKnown RBP22.29■■□□□ 1.16
NEK9-204ENST00000554258 IGF2BP3O00425 579 aaKnown RBP eCLIP22.28■■□□□ 1.16
NEK9-204ENST00000554258 PER1O15534 1290 aaPredicted RBP22.28■■□□□ 1.16
NEK9-204ENST00000554258 SP3Q02447 781 aa22.27■■□□□ 1.16
NEK9-204ENST00000554258 CRHR2Q13324 411 aa22.27■■□□□ 1.16
NEK9-204ENST00000554258 TBC1D16Q8TBP0 767 aa22.27■■□□□ 1.16
NEK9-204ENST00000554258 PRO3102Q9H379 93 aa22.27■■□□□ 1.16
NEK9-204ENST00000554258 ZBTB4Q9P1Z0 1013 aaPredicted RBP22.27■■□□□ 1.16
NEK9-204ENST00000554258 LAMB1P07942 1786 aa22.27■■□□□ 1.16
NEK9-204ENST00000554258 TRMT112Q9UI30 125 aaKnown RBP22.26■■□□□ 1.15
NEK9-204ENST00000554258 NBPF9Q3BBW0 867 aa22.25■■□□□ 1.15
NEK9-204ENST00000554258 LDLRAD1Q5T700 205 aa22.25■■□□□ 1.15
NEK9-204ENST00000554258 CELF1Q92879 486 aaKnown RBP22.25■■□□□ 1.15
NEK9-204ENST00000554258 RSPH6AQ9H0K4 717 aa22.25■■□□□ 1.15
NEK9-204ENST00000554258 PTCH2Q9Y6C5 1203 aa22.25■■□□□ 1.15
NEK9-204ENST00000554258 SH3TC1Q8TE82 1336 aa22.25■■□□□ 1.15
NEK9-204ENST00000554258 SOX1O00570 391 aaPredicted RBP22.24■■□□□ 1.15
NEK9-204ENST00000554258 CAP1Q01518 475 aa22.24■■□□□ 1.15
NEK9-204ENST00000554258 OTUD7BQ6GQQ9 843 aa22.24■■□□□ 1.15
NEK9-204ENST00000554258 NLRP10Q86W26 655 aa22.24■■□□□ 1.15
NEK9-204ENST00000554258 SLC10A4Q96EP9 437 aa22.24■■□□□ 1.15
NEK9-204ENST00000554258 LRCH3Q96II8 777 aa22.24■■□□□ 1.15
NEK9-204ENST00000554258 COL25A1Q9BXS0 654 aaPredicted RBP22.24■■□□□ 1.15
NEK9-204ENST00000554258 ANGEL1Q9UNK9 670 aaKnown RBP22.24■■□□□ 1.15
NEK9-204ENST00000554258 WTIPA6NIX2 430 aaPredicted RBP22.23■■□□□ 1.15
NEK9-204ENST00000554258 GMLQ99445 158 aa22.23■■□□□ 1.15
NEK9-204ENST00000554258 ZBTB48P10074 688 aaPredicted RBP22.22■■□□□ 1.15
NEK9-204ENST00000554258 DDX10Q13206 875 aaKnown RBP22.22■■□□□ 1.15
NEK9-204ENST00000554258 ARHGEF6Q15052 776 aa22.22■■□□□ 1.15
NEK9-204ENST00000554258 A0A1W2PPC1 479 aa22.21■■□□□ 1.15
NEK9-204ENST00000554258 HTATSF1O43719 755 aaKnown RBP22.21■■□□□ 1.15
NEK9-204ENST00000554258 HSP90AB3PQ58FF7 597 aa22.21■■□□□ 1.15
NEK9-204ENST00000554258 CC2D1BQ5T0F9 858 aaKnown RBP22.21■■□□□ 1.15
NEK9-204ENST00000554258 THUMPD2Q9BTF0 503 aaKnown RBP22.21■■□□□ 1.15
NEK9-204ENST00000554258 ERBB4Q15303 1308 aa22.21■■□□□ 1.15
NEK9-204ENST00000554258 WNK4Q96J92 1243 aa22.2■■□□□ 1.14
NEK9-204ENST00000554258 NR2E3Q9Y5X4 410 aa22.2■■□□□ 1.14
NEK9-204ENST00000554258 VCANP13611 3396 aa22.2■■□□□ 1.14
NEK9-204ENST00000554258 UFL1O94874 794 aa22.19■■□□□ 1.14
NEK9-204ENST00000554258 EIF4A1P60842 406 aaKnown RBP22.19■■□□□ 1.14
NEK9-204ENST00000554258 PNISRQ8TF01 805 aaKnown RBP22.19■■□□□ 1.14
NEK9-204ENST00000554258 HTATIP2Q9BUP3 242 aa22.19■■□□□ 1.14
NEK9-204ENST00000554258 COL4A1P02462 1669 aa22.19■■□□□ 1.14
NEK9-204ENST00000554258 SH3TC2Q8TF17 1288 aa22.18■■□□□ 1.14
Retrieved 100 of 20,778 RNA–protein pairs in 12.9 ms