RNA–Protein interactions for RNA: ENST00000553289.5

SYNE2-208, Transcript of spectrin repeat containing nuclear envelope protein 2, human

TSL 2

Gene SYNE2, Length 5,261 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SYNE2-208	ENST00000553289	NPHP3	Q7Z494	1330 aa		13.19	□□□□□ -0.3
SYNE2-208	ENST00000553289	CLCN1	P35523	988 aa		13.19	□□□□□ -0.3
SYNE2-208	ENST00000553289	ATL3	Q6DD88	541 aa		13.19	□□□□□ -0.3
SYNE2-208	ENST00000553289		Q6ZUG5	572 aa		13.19	□□□□□ -0.3
SYNE2-208	ENST00000553289	RTL9	Q8NET4	1388 aa		13.19	□□□□□ -0.3
SYNE2-208	ENST00000553289	SYCP2	Q9BX26	1530 aa		13.19	□□□□□ -0.3
SYNE2-208	ENST00000553289	POLK	Q9UBT6	870 aa		13.19	□□□□□ -0.3
SYNE2-208	ENST00000553289	ZNF608	Q9ULD9	1512 aa	Predicted RBP	13.19	□□□□□ -0.3
SYNE2-208	ENST00000553289	RRAGB	Q5VZM2	374 aa		13.19	□□□□□ -0.3
SYNE2-208	ENST00000553289	CEP85	Q6P2H3	762 aa		13.19	□□□□□ -0.3
SYNE2-208	ENST00000553289	NPAT	Q14207	1427 aa		13.19	□□□□□ -0.3
SYNE2-208	ENST00000553289	AKR1B10	O60218	316 aa		13.19	□□□□□ -0.3
SYNE2-208	ENST00000553289	CCDC175	P0C221	793 aa		13.19	□□□□□ -0.3
SYNE2-208	ENST00000553289	CTNNBL1	Q8WYA6	563 aa	Predicted RBP	13.19	□□□□□ -0.3
SYNE2-208	ENST00000553289	PSMA7	O14818	248 aa		13.18	□□□□□ -0.3
SYNE2-208	ENST00000553289	VAMP4	O75379	141 aa		13.18	□□□□□ -0.3
SYNE2-208	ENST00000553289	CYP7A1	P22680	504 aa		13.18	□□□□□ -0.3
SYNE2-208	ENST00000553289	STAT6	P42226	847 aa		13.18	□□□□□ -0.3
SYNE2-208	ENST00000553289	ST5	P78524	1137 aa		13.18	□□□□□ -0.3
SYNE2-208	ENST00000553289	RAB3GAP1	Q15042	981 aa		13.18	□□□□□ -0.3
SYNE2-208	ENST00000553289	LMBR1L	Q6UX01	489 aa		13.18	□□□□□ -0.3
SYNE2-208	ENST00000553289	GIGYF2	Q6Y7W6	1299 aa	Known RBP	13.18	□□□□□ -0.3
SYNE2-208	ENST00000553289	SLC4A4	Q9Y6R1	1079 aa		13.18	□□□□□ -0.3
SYNE2-208	ENST00000553289	MSH6	P52701	1360 aa		13.18	□□□□□ -0.3
SYNE2-208	ENST00000553289	ADAMTS2	O95450	1211 aa		13.18	□□□□□ -0.3
SYNE2-208	ENST00000553289	CEBPA	P49715	358 aa	Predicted RBP	13.18	□□□□□ -0.3
SYNE2-208	ENST00000553289	BBX	Q8WY36	941 aa	Predicted RBP	13.18	□□□□□ -0.3
SYNE2-208	ENST00000553289	PANK2	Q9BZ23	570 aa		13.18	□□□□□ -0.3
SYNE2-208	ENST00000553289	PAG1	Q9NWQ8	432 aa		13.18	□□□□□ -0.3
SYNE2-208	ENST00000553289	CTNNA2	P26232	953 aa		13.18	□□□□□ -0.3
SYNE2-208	ENST00000553289	CALML3	P27482	149 aa		13.18	□□□□□ -0.3
SYNE2-208	ENST00000553289	SYCP3	Q8IZU3	236 aa		13.18	□□□□□ -0.3
SYNE2-208	ENST00000553289	FEZ1	Q99689	392 aa		13.18	□□□□□ -0.3
SYNE2-208	ENST00000553289	JADE2	Q9NQC1	790 aa		13.18	□□□□□ -0.3
SYNE2-208	ENST00000553289	ZBTB40	Q9NUA8	1239 aa		13.18	□□□□□ -0.3
SYNE2-208	ENST00000553289	NUP153	P49790	1475 aa	Known RBP	13.18	□□□□□ -0.3
SYNE2-208	ENST00000553289	MAP3K5	Q99683	1374 aa		13.18	□□□□□ -0.3
SYNE2-208	ENST00000553289	TSPY3	P0CV98	308 aa		13.18	□□□□□ -0.3
SYNE2-208	ENST00000553289	TSPY8	P0CW00	308 aa		13.18	□□□□□ -0.3
SYNE2-208	ENST00000553289	SKIL	P12757	684 aa		13.18	□□□□□ -0.3
SYNE2-208	ENST00000553289	NOP2	P46087	812 aa	Known RBP	13.18	□□□□□ -0.3
SYNE2-208	ENST00000553289	ANXA1	P04083	346 aa		13.17	□□□□□ -0.3
SYNE2-208	ENST00000553289	BRAP	Q7Z569	592 aa		13.17	□□□□□ -0.3
SYNE2-208	ENST00000553289	BABAM1	Q9NWV8	329 aa		13.17	□□□□□ -0.3
SYNE2-208	ENST00000553289	DACT1	Q9NYF0	836 aa		13.17	□□□□□ -0.3
SYNE2-208	ENST00000553289	PRPH	P41219	470 aa		13.17	□□□□□ -0.3
SYNE2-208	ENST00000553289	NOLC1	Q14978	699 aa	Known RBP eCLIP	13.17	□□□□□ -0.3
SYNE2-208	ENST00000553289	NGLY1	Q96IV0	654 aa		13.17	□□□□□ -0.3
SYNE2-208	ENST00000553289	MPHOSPH6	Q99547	160 aa	Known RBP	13.17	□□□□□ -0.3
SYNE2-208	ENST00000553289	UHRF1BP1	Q6BDS2	1440 aa		13.17	□□□□□ -0.3
SYNE2-208	ENST00000553289	STAMBP	O95630	424 aa		13.17	□□□□□ -0.3
SYNE2-208	ENST00000553289	NMI	Q13287	307 aa	Predicted RBP	13.17	□□□□□ -0.3
SYNE2-208	ENST00000553289	NBPF6	Q5VWK0	638 aa		13.17	□□□□□ -0.3
SYNE2-208	ENST00000553289	NBPF5P	Q86XG9	351 aa	Predicted RBP	13.17	□□□□□ -0.3
SYNE2-208	ENST00000553289	TBC1D5	Q92609	795 aa		13.17	□□□□□ -0.3
SYNE2-208	ENST00000553289	NBPF4	Q96M43	638 aa		13.17	□□□□□ -0.3
SYNE2-208	ENST00000553289	VAT1L	Q9HCJ6	419 aa		13.17	□□□□□ -0.3
SYNE2-208	ENST00000553289	POLR3G	O15318	223 aa	Predicted RBP	13.17	□□□□□ -0.3
SYNE2-208	ENST00000553289	RNF113A	O15541	343 aa	Known RBP	13.17	□□□□□ -0.3
SYNE2-208	ENST00000553289	PRC1	O43663	620 aa		13.17	□□□□□ -0.3
SYNE2-208	ENST00000553289	RFC4	P35249	363 aa		13.17	□□□□□ -0.3
SYNE2-208	ENST00000553289	SPECC1L	Q69YQ0	1117 aa		13.17	□□□□□ -0.3
SYNE2-208	ENST00000553289	FERMT2	Q96AC1	680 aa		13.17	□□□□□ -0.3
SYNE2-208	ENST00000553289	ABCC1	P33527	1531 aa		13.17	□□□□□ -0.3
SYNE2-208	ENST00000553289	NPC1L1	Q9UHC9	1359 aa		13.17	□□□□□ -0.3
SYNE2-208	ENST00000553289	SPTLC2	O15270	562 aa		13.16	□□□□□ -0.3
SYNE2-208	ENST00000553289	ZKSCAN5	Q9Y2L8	839 aa		13.16	□□□□□ -0.3
SYNE2-208	ENST00000553289	TRPM2	O94759	1503 aa		13.16	□□□□□ -0.3
SYNE2-208	ENST00000553289	CTAGE15	A4D2H0	777 aa		13.16	□□□□□ -0.3
SYNE2-208	ENST00000553289	TRIM75P	A6NK02	468 aa		13.16	□□□□□ -0.3
SYNE2-208	ENST00000553289	CTAGE8	P0CG41	777 aa		13.16	□□□□□ -0.3
SYNE2-208	ENST00000553289	DNA2	P51530	1060 aa		13.16	□□□□□ -0.3
SYNE2-208	ENST00000553289	CCDC174	Q6PII3	467 aa		13.16	□□□□□ -0.3
SYNE2-208	ENST00000553289	CTAGE6	Q86UF2	777 aa		13.16	□□□□□ -0.3
SYNE2-208	ENST00000553289	CTAGE4	Q8IX94	777 aa		13.16	□□□□□ -0.3
SYNE2-208	ENST00000553289	GIMAP7	Q8NHV1	300 aa		13.16	□□□□□ -0.3
SYNE2-208	ENST00000553289	FERMT1	Q9BQL6	677 aa		13.16	□□□□□ -0.3
SYNE2-208	ENST00000553289	STX8	Q9UNK0	236 aa		13.16	□□□□□ -0.3
SYNE2-208	ENST00000553289	RTL1	A6NKG5	1358 aa		13.16	□□□□□ -0.3
SYNE2-208	ENST00000553289	SLC9C2	Q5TAH2	1124 aa		13.16	□□□□□ -0.3
SYNE2-208	ENST00000553289	NAA16	Q6N069	864 aa	Predicted RBP	13.16	□□□□□ -0.3
SYNE2-208	ENST00000553289	TESK2	Q96S53	571 aa		13.16	□□□□□ -0.3
SYNE2-208	ENST00000553289	CEP112	Q8N8E3	955 aa		13.16	□□□□□ -0.3
SYNE2-208	ENST00000553289	MTHFSD	Q2M296	383 aa	Known RBP	13.15	□□□□□ -0.3
SYNE2-208	ENST00000553289	SPAG5	Q96R06	1193 aa		13.15	□□□□□ -0.3
SYNE2-208	ENST00000553289	BCCIP	Q9P287	314 aa	Known RBP eCLIP	13.15	□□□□□ -0.3
SYNE2-208	ENST00000553289	FSD2	A1L4K1	749 aa		13.15	□□□□□ -0.3
SYNE2-208	ENST00000553289	HSF2BP	O75031	334 aa		13.15	□□□□□ -0.3
SYNE2-208	ENST00000553289	CCDC186	Q7Z3E2	898 aa		13.15	□□□□□ -0.3
SYNE2-208	ENST00000553289	MACROD2	A1Z1Q3	448 aa		13.15	□□□□□ -0.3
SYNE2-208	ENST00000553289	DNM1	Q05193	864 aa	Known RBP	13.15	□□□□□ -0.3
SYNE2-208	ENST00000553289	KRT222	Q8N1A0	295 aa		13.15	□□□□□ -0.3
SYNE2-208	ENST00000553289	ABCC10	Q5T3U5	1492 aa		13.15	□□□□□ -0.3
SYNE2-208	ENST00000553289	CTTNBP2	Q8WZ74	1663 aa		13.15	□□□□□ -0.3
SYNE2-208	ENST00000553289	KRT83	P78385	493 aa		13.15	□□□□□ -0.3
SYNE2-208	ENST00000553289	NLRP3	Q96P20	1036 aa		13.15	□□□□□ -0.3
SYNE2-208	ENST00000553289	MYO1B	O43795	1136 aa		13.14	□□□□□ -0.31
SYNE2-208	ENST00000553289	XRCC6	P12956	609 aa	Known RBP eCLIP	13.14	□□□□□ -0.31
SYNE2-208	ENST00000553289	KIAA0753	Q2KHM9	967 aa		13.14	□□□□□ -0.31
SYNE2-208	ENST00000553289	CREB3L3	Q68CJ9	461 aa		13.14	□□□□□ -0.31

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