RNA–Protein interactions for RNA: ENST00000547672.5

PTCH1-215, Transcript of patched 1, humanhuman

TSL 1 (best)

Gene PTCH1, Length 881 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-215ENST00000547672 FAM177BA6PVY3 158 aa16.21■□□□□ 0.19
PTCH1-215ENST00000547672 NPHP1O15259 732 aa16.21■□□□□ 0.19
PTCH1-215ENST00000547672 TRIM37O94972 964 aa16.21■□□□□ 0.19
PTCH1-215ENST00000547672 SLC5A1P13866 664 aa16.21■□□□□ 0.19
PTCH1-215ENST00000547672 TTF1Q15361 905 aaPredicted RBP16.21■□□□□ 0.19
PTCH1-215ENST00000547672 RNF20Q5VTR2 975 aa16.21■□□□□ 0.19
PTCH1-215ENST00000547672 ZSCAN25Q6NSZ9 544 aa16.21■□□□□ 0.19
PTCH1-215ENST00000547672 KBTBD3Q8NAB2 608 aa16.21■□□□□ 0.19
PTCH1-215ENST00000547672 XAGE2Q96GT9 111 aa16.21■□□□□ 0.19
PTCH1-215ENST00000547672 SNRKQ9NRH2 765 aa16.21■□□□□ 0.19
PTCH1-215ENST00000547672 TAF1LQ8IZX4 1826 aa16.21■□□□□ 0.19
PTCH1-215ENST00000547672 ANKRD18AQ8IVF6 992 aa16.2■□□□□ 0.18
PTCH1-215ENST00000547672 CCDC85AQ96PX6 553 aaPredicted RBP16.2■□□□□ 0.18
PTCH1-215ENST00000547672 KIF2CQ99661 725 aa16.2■□□□□ 0.18
PTCH1-215ENST00000547672 PAG1Q9NWQ8 432 aa16.2■□□□□ 0.18
PTCH1-215ENST00000547672 RGS17Q9UGC6 210 aaPredicted RBP16.2■□□□□ 0.18
PTCH1-215ENST00000547672 C4BP0C0L5 1744 aa16.19■□□□□ 0.18
PTCH1-215ENST00000547672 SPEF2Q9C093 1822 aa16.19■□□□□ 0.18
PTCH1-215ENST00000547672 LAMB2P55268 1798 aa16.19■□□□□ 0.18
PTCH1-215ENST00000547672 SCN7AQ01118 1682 aa16.19■□□□□ 0.18
PTCH1-215ENST00000547672 HSP90AA1P07900 732 aaKnown RBP16.19■□□□□ 0.18
PTCH1-215ENST00000547672 ZKSCAN1P17029 563 aaPredicted RBP16.19■□□□□ 0.18
PTCH1-215ENST00000547672 HSPA4P34932 840 aa16.19■□□□□ 0.18
PTCH1-215ENST00000547672 KCNQ4P56696 695 aa16.19■□□□□ 0.18
PTCH1-215ENST00000547672 TBC1D9BQ66K14 1250 aa16.19■□□□□ 0.18
PTCH1-215ENST00000547672 DNAJC2Q99543 621 aaKnown RBP16.19■□□□□ 0.18
PTCH1-215ENST00000547672 DDX24Q9GZR7 859 aaKnown RBP eCLIP16.19■□□□□ 0.18
PTCH1-215ENST00000547672 HELLSQ9NRZ9 838 aa16.19■□□□□ 0.18
PTCH1-215ENST00000547672 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP16.19■□□□□ 0.18
PTCH1-215ENST00000547672 CARMIL3Q8ND23 1372 aa16.18■□□□□ 0.18
PTCH1-215ENST00000547672 K7ELQ4 463 aaPredicted RBP16.18■□□□□ 0.18
PTCH1-215ENST00000547672 KCNJ4P48050 445 aa16.18■□□□□ 0.18
PTCH1-215ENST00000547672 ERFEQ4G0M1 354 aa16.18■□□□□ 0.18
PTCH1-215ENST00000547672 BCL2L12Q9HB09 334 aa16.18■□□□□ 0.18
PTCH1-215ENST00000547672 TXNRD1Q16881 649 aa16.17■□□□□ 0.18
PTCH1-215ENST00000547672 MCMDC2Q4G0Z9 681 aa16.17■□□□□ 0.18
PTCH1-215ENST00000547672 BICDL1Q6ZP65 573 aa16.17■□□□□ 0.18
PTCH1-215ENST00000547672 ANKRD2Q9GZV1 360 aa16.17■□□□□ 0.18
PTCH1-215ENST00000547672 LSG1Q9H089 658 aaKnown RBP16.17■□□□□ 0.18
PTCH1-215ENST00000547672 GNL3LQ9NVN8 582 aaKnown RBP16.17■□□□□ 0.18
PTCH1-215ENST00000547672 BSDC1Q9NW68 430 aaPredicted RBP16.17■□□□□ 0.18
PTCH1-215ENST00000547672 BRWD3Q6RI45 1802 aa16.17■□□□□ 0.18
PTCH1-215ENST00000547672 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP16.16■□□□□ 0.18
PTCH1-215ENST00000547672 PSMA5P28066 241 aa16.16■□□□□ 0.18
PTCH1-215ENST00000547672 SLC4A3P48751 1232 aa16.16■□□□□ 0.18
PTCH1-215ENST00000547672 NMIQ13287 307 aaPredicted RBP16.16■□□□□ 0.18
PTCH1-215ENST00000547672 VGLL2Q8N8G2 317 aa16.16■□□□□ 0.18
PTCH1-215ENST00000547672 HMG20BQ9P0W2 317 aa16.16■□□□□ 0.18
PTCH1-215ENST00000547672 SRP68Q9UHB9 627 aaKnown RBP16.16■□□□□ 0.18
PTCH1-215ENST00000547672 CIZ1Q9ULV3 898 aaPredicted RBP16.16■□□□□ 0.18
PTCH1-215ENST00000547672 GOLIM4O00461 696 aa16.15■□□□□ 0.18
PTCH1-215ENST00000547672 RNF113AO15541 343 aaKnown RBP16.15■□□□□ 0.18
PTCH1-215ENST00000547672 APBA3O96018 575 aa16.15■□□□□ 0.18
PTCH1-215ENST00000547672 UBE4AQ14139 1066 aa16.15■□□□□ 0.18
PTCH1-215ENST00000547672 KRT32Q14532 448 aa16.15■□□□□ 0.18
PTCH1-215ENST00000547672 DDX46Q7L014 1031 aaKnown RBP16.15■□□□□ 0.18
PTCH1-215ENST00000547672 MAP4K1Q92918 833 aa16.15■□□□□ 0.18
PTCH1-215ENST00000547672 TM6SF1Q9BZW5 370 aa16.15■□□□□ 0.18
PTCH1-215ENST00000547672 LRRC4BQ9NT99 713 aa16.15■□□□□ 0.18
PTCH1-215ENST00000547672 U3KPZ7 1027 aaPredicted RBP16.15■□□□□ 0.18
PTCH1-215ENST00000547672 CCDC171Q6TFL3 1326 aa16.15■□□□□ 0.18
PTCH1-215ENST00000547672 PHF14O94880 888 aa16.14■□□□□ 0.17
PTCH1-215ENST00000547672 FGFR2P21802 821 aa16.14■□□□□ 0.17
PTCH1-215ENST00000547672 NEK4P51957 841 aa16.14■□□□□ 0.17
PTCH1-215ENST00000547672 RPS8P62241 208 aaKnown RBP16.14■□□□□ 0.17
PTCH1-215ENST00000547672 ST5P78524 1137 aa16.14■□□□□ 0.17
PTCH1-215ENST00000547672 FKBP4Q02790 459 aaKnown RBP eCLIP16.14■□□□□ 0.17
PTCH1-215ENST00000547672 ANP32EQ9BTT0 268 aa16.14■□□□□ 0.17
PTCH1-215ENST00000547672 CWC22Q9HCG8 908 aaKnown RBP16.14■□□□□ 0.17
PTCH1-215ENST00000547672 CHMP5Q9NZZ3 219 aa16.14■□□□□ 0.17
PTCH1-215ENST00000547672 DDX60Q8IY21 1712 aaKnown RBP16.14■□□□□ 0.17
PTCH1-215ENST00000547672 RIC1Q4ADV7 1423 aa16.13■□□□□ 0.17
PTCH1-215ENST00000547672 ARID4AP29374 1257 aaPredicted RBP16.13■□□□□ 0.17
PTCH1-215ENST00000547672 NLGN1Q8N2Q7 840 aa16.13■□□□□ 0.17
PTCH1-215ENST00000547672 CNBD1Q8NA66 436 aa16.13■□□□□ 0.17
PTCH1-215ENST00000547672 KCNB2Q92953 911 aa16.13■□□□□ 0.17
PTCH1-215ENST00000547672 IGSF3O75054 1194 aa16.12■□□□□ 0.17
PTCH1-215ENST00000547672 CAVIN4Q5BKX8 364 aa16.12■□□□□ 0.17
PTCH1-215ENST00000547672 TMED8Q6PL24 325 aaPredicted RBP16.12■□□□□ 0.17
PTCH1-215ENST00000547672 SEC31BQ9NQW1 1179 aa16.12■□□□□ 0.17
PTCH1-215ENST00000547672 CTNNA3Q9UI47 895 aa16.12■□□□□ 0.17
PTCH1-215ENST00000547672 COL24A1Q17RW2 1714 aa16.11■□□□□ 0.17
PTCH1-215ENST00000547672 CHRNDQ07001 517 aa16.11■□□□□ 0.17
PTCH1-215ENST00000547672 NFIXQ14938 502 aa16.11■□□□□ 0.17
PTCH1-215ENST00000547672 TSGA10IPQ3SY00 556 aa16.11■□□□□ 0.17
PTCH1-215ENST00000547672 ZMYM1Q5SVZ6 1142 aa16.11■□□□□ 0.17
PTCH1-215ENST00000547672 CCDC102BQ68D86 513 aa16.11■□□□□ 0.17
PTCH1-215ENST00000547672 FAM227BQ96M60 508 aa16.11■□□□□ 0.17
PTCH1-215ENST00000547672 TFCP2L1Q9NZI6 479 aa16.11■□□□□ 0.17
PTCH1-215ENST00000547672 LRP5O75197 1615 aa16.11■□□□□ 0.17
PTCH1-215ENST00000547672 SEMA3EO15041 775 aa16.1■□□□□ 0.17
PTCH1-215ENST00000547672 ZBTB22O15209 634 aa16.1■□□□□ 0.17
PTCH1-215ENST00000547672 TAF5LO75529 589 aa16.1■□□□□ 0.17
PTCH1-215ENST00000547672 TM4SF1P30408 202 aa16.1■□□□□ 0.17
PTCH1-215ENST00000547672 ADORA1P30542 326 aa16.1■□□□□ 0.17
PTCH1-215ENST00000547672 NECTIN1Q15223 517 aa16.1■□□□□ 0.17
PTCH1-215ENST00000547672 TMC4Q7Z404 712 aa16.1■□□□□ 0.17
PTCH1-215ENST00000547672 DSCC1Q9BVC3 393 aa16.1■□□□□ 0.17
PTCH1-215ENST00000547672 RBM8AQ9Y5S9 174 aaKnown RBP16.1■□□□□ 0.17
PTCH1-215ENST00000547672 SNX14Q9Y5W7 946 aa16.1■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 22.7 ms