RNA–Protein interactions for RNA: ENST00000546534.1

SCAF11-208, Transcript of SR-related CTD associated factor 11, humanhuman

TSL 3

Gene SCAF11, Length 705 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCAF11-208ENST00000546534 ANKRD36CQ5JPF3 1778 aa16.77■□□□□ 0.28
SCAF11-208ENST00000546534 RIMBP2O15034 1052 aa16.77■□□□□ 0.28
SCAF11-208ENST00000546534 TCIRG1Q13488 830 aa16.77■□□□□ 0.28
SCAF11-208ENST00000546534 REM2Q8IYK8 340 aaPredicted RBP16.77■□□□□ 0.28
SCAF11-208ENST00000546534 XAGE3Q8WTP9 111 aa16.77■□□□□ 0.28
SCAF11-208ENST00000546534 ZNF428Q96B54 188 aa16.77■□□□□ 0.28
SCAF11-208ENST00000546534 NSFL1CQ9UNZ2 370 aaKnown RBP16.77■□□□□ 0.28
SCAF11-208ENST00000546534 TNRC18O15417 2968 aaPredicted RBP16.77■□□□□ 0.27
SCAF11-208ENST00000546534 RPS12P25398 132 aaKnown RBP16.76■□□□□ 0.27
SCAF11-208ENST00000546534 NECTIN2Q92692 538 aa16.76■□□□□ 0.27
SCAF11-208ENST00000546534 CSRNP1Q96S65 589 aa16.76■□□□□ 0.27
SCAF11-208ENST00000546534 POLLQ9UGP5 575 aa16.76■□□□□ 0.27
SCAF11-208ENST00000546534 TAF1P21675 1872 aa16.76■□□□□ 0.27
SCAF11-208ENST00000546534 SLC10A3P09131 477 aa16.75■□□□□ 0.27
SCAF11-208ENST00000546534 DOK7Q18PE1 504 aa16.75■□□□□ 0.27
SCAF11-208ENST00000546534 CELF1Q92879 486 aaKnown RBP16.75■□□□□ 0.27
SCAF11-208ENST00000546534 LRRC37AA6NMS7 1700 aa16.75■□□□□ 0.27
SCAF11-208ENST00000546534 RTL9Q8NET4 1388 aa16.75■□□□□ 0.27
SCAF11-208ENST00000546534 MAPK8IP3Q9UPT6 1336 aa16.74■□□□□ 0.27
SCAF11-208ENST00000546534 C6orf229H3BNL8 230 aa16.74■□□□□ 0.27
SCAF11-208ENST00000546534 ECE2O60344 883 aa16.74■□□□□ 0.27
SCAF11-208ENST00000546534 GPSM2P81274 684 aa16.74■□□□□ 0.27
SCAF11-208ENST00000546534 CTU1Q7Z7A3 348 aaKnown RBP16.74■□□□□ 0.27
SCAF11-208ENST00000546534 GGA3Q9NZ52 723 aa16.74■□□□□ 0.27
SCAF11-208ENST00000546534 ASTN2O75129 1339 aaPredicted RBP16.73■□□□□ 0.27
SCAF11-208ENST00000546534 KIF4BQ2VIQ3 1234 aa16.73■□□□□ 0.27
SCAF11-208ENST00000546534 SULF1Q8IWU6 871 aa16.73■□□□□ 0.27
SCAF11-208ENST00000546534 SF3B3Q15393 1217 aaKnown RBP16.72■□□□□ 0.27
SCAF11-208ENST00000546534 PRPF38BQ5VTL8 546 aaKnown RBP16.72■□□□□ 0.27
SCAF11-208ENST00000546534 SPDYE1Q8NFV5 336 aaPredicted RBP16.72■□□□□ 0.27
SCAF11-208ENST00000546534 CDCA5Q96FF9 252 aa16.72■□□□□ 0.27
SCAF11-208ENST00000546534 FAM89AQ96GI7 184 aa16.72■□□□□ 0.27
SCAF11-208ENST00000546534 VIL1P09327 827 aaKnown RBP16.71■□□□□ 0.27
SCAF11-208ENST00000546534 EYA3Q99504 573 aa16.71■□□□□ 0.27
SCAF11-208ENST00000546534 PNNQ9H307 717 aaKnown RBP16.71■□□□□ 0.27
SCAF11-208ENST00000546534 BABAM1Q9NWV8 329 aa16.71■□□□□ 0.27
SCAF11-208ENST00000546534 COL4A1P02462 1669 aa16.71■□□□□ 0.27
SCAF11-208ENST00000546534 POLR2AP24928 1970 aaKnown RBP16.71■□□□□ 0.27
SCAF11-208ENST00000546534 RIPK4P57078 832 aa16.7■□□□□ 0.26
SCAF11-208ENST00000546534 RASAL3Q86YV0 1011 aa16.7■□□□□ 0.26
SCAF11-208ENST00000546534 TBC1D16Q8TBP0 767 aa16.7■□□□□ 0.26
SCAF11-208ENST00000546534 HPS5Q9UPZ3 1129 aa16.7■□□□□ 0.26
SCAF11-208ENST00000546534 KRT24Q2M2I5 525 aa16.69■□□□□ 0.26
SCAF11-208ENST00000546534 PLBD2Q8NHP8 589 aa16.69■□□□□ 0.26
SCAF11-208ENST00000546534 ISCA1Q9BUE6 129 aa16.69■□□□□ 0.26
SCAF11-208ENST00000546534 DDX60Q8IY21 1712 aaKnown RBP16.68■□□□□ 0.26
SCAF11-208ENST00000546534 ATP5J2-PTCD1G3V325 749 aa16.68■□□□□ 0.26
SCAF11-208ENST00000546534 VASPP50552 380 aaPredicted RBP16.68■□□□□ 0.26
SCAF11-208ENST00000546534 RPS8P62241 208 aaKnown RBP16.68■□□□□ 0.26
SCAF11-208ENST00000546534 SCARF1Q14162 830 aa16.68■□□□□ 0.26
SCAF11-208ENST00000546534 RTL5Q5HYW3 569 aaPredicted RBP16.68■□□□□ 0.26
SCAF11-208ENST00000546534 ANGEL2Q5VTE6 544 aaKnown RBP16.68■□□□□ 0.26
SCAF11-208ENST00000546534 ZC3H12CQ9C0D7 883 aaKnown RBP16.68■□□□□ 0.26
SCAF11-208ENST00000546534 CHPF2Q9P2E5 772 aa16.68■□□□□ 0.26
SCAF11-208ENST00000546534 AKAP11Q9UKA4 1901 aa16.67■□□□□ 0.26
SCAF11-208ENST00000546534 ZNF280AP59817 542 aaPredicted RBP16.67■□□□□ 0.26
SCAF11-208ENST00000546534 G3V3G9 751 aa16.66■□□□□ 0.26
SCAF11-208ENST00000546534 FKBP1BP68106 108 aa16.66■□□□□ 0.26
SCAF11-208ENST00000546534 DCAF8Q5TAQ9 597 aa16.66■□□□□ 0.26
SCAF11-208ENST00000546534 ANKRD13DQ6ZTN6 518 aa16.66■□□□□ 0.26
SCAF11-208ENST00000546534 HDAC9Q9UKV0 1011 aa16.66■□□□□ 0.26
SCAF11-208ENST00000546534 IRS4O14654 1257 aaPredicted RBP16.65■□□□□ 0.26
SCAF11-208ENST00000546534 UFL1O94874 794 aa16.65■□□□□ 0.26
SCAF11-208ENST00000546534 TBC1D8O95759 1140 aa16.65■□□□□ 0.26
SCAF11-208ENST00000546534 TMPOP42166 694 aaKnown RBP16.65■□□□□ 0.26
SCAF11-208ENST00000546534 PKN2Q16513 984 aaKnown RBP16.65■□□□□ 0.26
SCAF11-208ENST00000546534 RSBN1LQ6PCB5 846 aaPredicted RBP16.65■□□□□ 0.26
SCAF11-208ENST00000546534 MOB2Q70IA6 237 aa16.65■□□□□ 0.26
SCAF11-208ENST00000546534 AGBL3Q8NEM8 1001 aa16.65■□□□□ 0.26
SCAF11-208ENST00000546534 ZNF296Q8WUU4 475 aaPredicted RBP16.65■□□□□ 0.26
SCAF11-208ENST00000546534 SEC31BQ9NQW1 1179 aa16.65■□□□□ 0.26
SCAF11-208ENST00000546534 PODXL2Q9NZ53 605 aa16.65■□□□□ 0.26
SCAF11-208ENST00000546534 SCN9AQ15858 1988 aa16.65■□□□□ 0.26
SCAF11-208ENST00000546534 UBE2Q2LH0YL09 131 aa16.64■□□□□ 0.25
SCAF11-208ENST00000546534 CHL1O00533 1208 aa16.64■□□□□ 0.25
SCAF11-208ENST00000546534 ANKIB1Q9P2G1 1089 aa16.64■□□□□ 0.25
SCAF11-208ENST00000546534 SCAF8Q9UPN6 1271 aaKnown RBP16.64■□□□□ 0.25
SCAF11-208ENST00000546534 LMOD3Q0VAK6 560 aa16.63■□□□□ 0.25
SCAF11-208ENST00000546534 TRIM28Q13263 835 aaKnown RBP16.63■□□□□ 0.25
SCAF11-208ENST00000546534 HDGFL1Q5TGJ6 251 aa16.63■□□□□ 0.25
SCAF11-208ENST00000546534 GMLQ99445 158 aa16.63■□□□□ 0.25
SCAF11-208ENST00000546534 GGA1Q9UJY5 639 aa16.63■□□□□ 0.25
SCAF11-208ENST00000546534 ZNF609O15014 1411 aa16.62■□□□□ 0.25
SCAF11-208ENST00000546534 PAPPA2Q9BXP8 1791 aa16.62■□□□□ 0.25
SCAF11-208ENST00000546534 USP17L8P0C7I0 530 aa16.62■□□□□ 0.25
SCAF11-208ENST00000546534 PRAMEF18Q5VWM3 479 aa16.62■□□□□ 0.25
SCAF11-208ENST00000546534 MYOZ2Q9NPC6 264 aa16.62■□□□□ 0.25
SCAF11-208ENST00000546534 DBF4Q9UBU7 674 aaPredicted RBP16.62■□□□□ 0.25
SCAF11-208ENST00000546534 LAS1LQ9Y4W2 734 aaKnown RBP16.62■□□□□ 0.25
SCAF11-208ENST00000546534 PITPNM2Q9BZ72 1349 aa16.62■□□□□ 0.25
SCAF11-208ENST00000546534 GPR25O00155 361 aa16.61■□□□□ 0.25
SCAF11-208ENST00000546534 TM4SF4P48230 202 aa16.6■□□□□ 0.25
SCAF11-208ENST00000546534 NEUROD2Q15784 382 aa16.6■□□□□ 0.25
SCAF11-208ENST00000546534 HOXB7P09629 217 aa16.59■□□□□ 0.25
SCAF11-208ENST00000546534 FBXO46Q6PJ61 603 aaPredicted RBP16.59■□□□□ 0.25
SCAF11-208ENST00000546534 ZBTB38Q8NAP3 1195 aaPredicted RBP16.59■□□□□ 0.25
SCAF11-208ENST00000546534 HYPKQ9NX55 129 aa16.59■□□□□ 0.25
SCAF11-208ENST00000546534 USP17L3A6NCW0 530 aa16.58■□□□□ 0.24
SCAF11-208ENST00000546534 USP17L4A6NCW7 530 aa16.58■□□□□ 0.24
SCAF11-208ENST00000546534 MKRN3Q13064 507 aaKnown RBP16.58■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 12 ms