RNA–Protein interactions for RNA: ENST00000546378.1

HOXC11-202, Transcript of homeobox C11, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HOXC11, Length 3,261 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC11-202ENST00000546378 OSBPL3Q9H4L5 887 aa17.25■□□□□ 0.35
HOXC11-202ENST00000546378 SLC27A2O14975 620 aa17.24■□□□□ 0.35
HOXC11-202ENST00000546378 ST3GAL1Q11201 340 aa17.24■□□□□ 0.35
HOXC11-202ENST00000546378 ZSCAN25Q6NSZ9 544 aa17.24■□□□□ 0.35
HOXC11-202ENST00000546378 CCAR1Q8IX12 1150 aaKnown RBP17.24■□□□□ 0.35
HOXC11-202ENST00000546378 MYD88Q99836 296 aa17.24■□□□□ 0.35
HOXC11-202ENST00000546378 PTPN14Q15678 1187 aa17.23■□□□□ 0.35
HOXC11-202ENST00000546378 AMOTQ4VCS5 1084 aa17.23■□□□□ 0.35
HOXC11-202ENST00000546378 CCDC73Q6ZRK6 1079 aa17.23■□□□□ 0.35
HOXC11-202ENST00000546378 PDILTQ8N807 584 aa17.23■□□□□ 0.35
HOXC11-202ENST00000546378 LEO1Q8WVC0 666 aaPredicted RBP17.23■□□□□ 0.35
HOXC11-202ENST00000546378 BBXQ8WY36 941 aaPredicted RBP17.23■□□□□ 0.35
HOXC11-202ENST00000546378 CCDC171Q6TFL3 1326 aa17.23■□□□□ 0.35
HOXC11-202ENST00000546378 KINO60870 393 aaKnown RBP17.23■□□□□ 0.35
HOXC11-202ENST00000546378 NCBP1Q09161 790 aaKnown RBP17.23■□□□□ 0.35
HOXC11-202ENST00000546378 AKAP4Q5JQC9 854 aa17.23■□□□□ 0.35
HOXC11-202ENST00000546378 NFATC2IPQ8NCF5 419 aa17.23■□□□□ 0.35
HOXC11-202ENST00000546378 LMOD1P29536 600 aaPredicted RBP17.23■□□□□ 0.35
HOXC11-202ENST00000546378 FKBP4Q02790 459 aaKnown RBP eCLIP17.23■□□□□ 0.35
HOXC11-202ENST00000546378 SUCLG2Q96I99 432 aa17.23■□□□□ 0.35
HOXC11-202ENST00000546378 TTC14Q96N46 770 aa17.23■□□□□ 0.35
HOXC11-202ENST00000546378 LETM1O95202 739 aaPredicted RBP17.22■□□□□ 0.35
HOXC11-202ENST00000546378 MARCKSP29966 332 aaPredicted RBP17.22■□□□□ 0.35
HOXC11-202ENST00000546378 CHMP4AQ9BY43 222 aa17.22■□□□□ 0.35
HOXC11-202ENST00000546378 DMTNQ08495 405 aa17.22■□□□□ 0.35
HOXC11-202ENST00000546378 UBE3BQ7Z3V4 1068 aa17.22■□□□□ 0.35
HOXC11-202ENST00000546378 TMC6Q7Z403 805 aa17.22■□□□□ 0.35
HOXC11-202ENST00000546378 FSIP1Q8NA03 581 aa17.22■□□□□ 0.35
HOXC11-202ENST00000546378 GOLIM4O00461 696 aa17.22■□□□□ 0.35
HOXC11-202ENST00000546378 RNMTO43148 476 aaKnown RBP17.22■□□□□ 0.35
HOXC11-202ENST00000546378 SSH3Q8TE77 659 aa17.22■□□□□ 0.35
HOXC11-202ENST00000546378 CCDC69A6NI79 296 aa17.21■□□□□ 0.35
HOXC11-202ENST00000546378 WASHC4Q2M389 1173 aa17.21■□□□□ 0.35
HOXC11-202ENST00000546378 UVSSAQ2YD98 709 aa17.21■□□□□ 0.35
HOXC11-202ENST00000546378 RNF20Q5VTR2 975 aa17.21■□□□□ 0.35
HOXC11-202ENST00000546378 PGBD1Q96JS3 809 aa17.21■□□□□ 0.35
HOXC11-202ENST00000546378 BTG4Q9NY30 223 aa17.21■□□□□ 0.35
HOXC11-202ENST00000546378 KIF24Q5T7B8 1368 aa17.21■□□□□ 0.35
HOXC11-202ENST00000546378 ZNF75DP51815 510 aa17.21■□□□□ 0.35
HOXC11-202ENST00000546378 TNS3Q68CZ2 1445 aa17.21■□□□□ 0.35
HOXC11-202ENST00000546378 SYT10Q6XYQ8 523 aa17.21■□□□□ 0.35
HOXC11-202ENST00000546378 TOMM22Q9NS69 142 aa17.2■□□□□ 0.34
HOXC11-202ENST00000546378 CRB1P82279 1406 aa17.2■□□□□ 0.34
HOXC11-202ENST00000546378 TIMM10P62072 90 aa17.2■□□□□ 0.34
HOXC11-202ENST00000546378 SPECC1Q5M775 1068 aa17.2■□□□□ 0.34
HOXC11-202ENST00000546378 ERCC6LQ2NKX8 1250 aa17.2■□□□□ 0.34
HOXC11-202ENST00000546378 VPS53Q5VIR6 699 aa17.2■□□□□ 0.34
HOXC11-202ENST00000546378 HTATSF1O43719 755 aaKnown RBP17.19■□□□□ 0.34
HOXC11-202ENST00000546378 GTF2F1P35269 517 aaKnown RBP eCLIP17.19■□□□□ 0.34
HOXC11-202ENST00000546378 TERF1P54274 439 aa17.19■□□□□ 0.34
HOXC11-202ENST00000546378 STRCP1A6NGW2 1772 aa17.19■□□□□ 0.34
HOXC11-202ENST00000546378 LRRN4CLQ8ND94 238 aa17.18■□□□□ 0.34
HOXC11-202ENST00000546378 APPP05067 770 aa17.18■□□□□ 0.34
HOXC11-202ENST00000546378 PSMA5P28066 241 aa17.18■□□□□ 0.34
HOXC11-202ENST00000546378 KAT6BQ8WYB5 2073 aa17.18■□□□□ 0.34
HOXC11-202ENST00000546378 TFCP2Q12800 502 aa17.17■□□□□ 0.34
HOXC11-202ENST00000546378 CCDC34Q96HJ3 373 aa17.17■□□□□ 0.34
HOXC11-202ENST00000546378 DBNDD2Q9BQY9 259 aa17.17■□□□□ 0.34
HOXC11-202ENST00000546378 BEND3Q5T5X7 828 aa17.17■□□□□ 0.34
HOXC11-202ENST00000546378 NEK1Q96PY6 1258 aa17.17■□□□□ 0.34
HOXC11-202ENST00000546378 STAP2Q9UGK3 403 aa17.17■□□□□ 0.34
HOXC11-202ENST00000546378 UBAP1LF5GYI3 381 aa17.16■□□□□ 0.34
HOXC11-202ENST00000546378 CABP4P57796 275 aa17.16■□□□□ 0.34
HOXC11-202ENST00000546378 STK38Q15208 465 aa17.16■□□□□ 0.34
HOXC11-202ENST00000546378 AEBP2Q6ZN18 517 aaPredicted RBP17.16■□□□□ 0.34
HOXC11-202ENST00000546378 IFNL2Q8IZJ0 200 aa17.16■□□□□ 0.34
HOXC11-202ENST00000546378 ZNF594Q96JF6 807 aaPredicted RBP17.16■□□□□ 0.34
HOXC11-202ENST00000546378 USP28Q96RU2 1077 aa17.16■□□□□ 0.34
HOXC11-202ENST00000546378 NWD1Q149M9 1564 aa17.16■□□□□ 0.34
HOXC11-202ENST00000546378 GOLGB1Q14789 3259 aaKnown RBP17.16■□□□□ 0.34
HOXC11-202ENST00000546378 SOS2Q07890 1332 aaPredicted RBP17.16■□□□□ 0.34
HOXC11-202ENST00000546378 SALL3Q9BXA9 1300 aa17.16■□□□□ 0.34
HOXC11-202ENST00000546378 URI1O94763 535 aaPredicted RBP17.16■□□□□ 0.34
HOXC11-202ENST00000546378 SASH1O94885 1247 aa17.16■□□□□ 0.34
HOXC11-202ENST00000546378 PDCP20941 246 aa17.16■□□□□ 0.34
HOXC11-202ENST00000546378 TTC5Q8N0Z6 440 aa17.16■□□□□ 0.34
HOXC11-202ENST00000546378 EVI5LQ96CN4 794 aa17.16■□□□□ 0.34
HOXC11-202ENST00000546378 IFNKQ9P0W0 207 aa17.16■□□□□ 0.34
HOXC11-202ENST00000546378 GYS2P54840 703 aa17.16■□□□□ 0.34
HOXC11-202ENST00000546378 COPS6Q7L5N1 327 aa17.16■□□□□ 0.34
HOXC11-202ENST00000546378 SCAND2PQ9GZW5 306 aaPredicted RBP17.16■□□□□ 0.34
HOXC11-202ENST00000546378 NFAT5O94916 1531 aa17.15■□□□□ 0.34
HOXC11-202ENST00000546378 CYP27B1O15528 508 aa17.15■□□□□ 0.34
HOXC11-202ENST00000546378 EIF4A1P60842 406 aaKnown RBP17.15■□□□□ 0.34
HOXC11-202ENST00000546378 EPHA10Q5JZY3 1008 aa17.15■□□□□ 0.34
HOXC11-202ENST00000546378 ZSCAN31Q96LW9 406 aaPredicted RBP17.15■□□□□ 0.34
HOXC11-202ENST00000546378 SH2B1Q9NRF2 756 aaPredicted RBP17.15■□□□□ 0.34
HOXC11-202ENST00000546378 RNF216Q9NWF9 866 aaPredicted RBP17.15■□□□□ 0.34
HOXC11-202ENST00000546378 DNAI1Q9UI46 699 aa17.15■□□□□ 0.34
HOXC11-202ENST00000546378 HSP90AB4PQ58FF6 505 aa17.15■□□□□ 0.34
HOXC11-202ENST00000546378 ZSWIM6Q9HCJ5 1215 aa17.15■□□□□ 0.34
HOXC11-202ENST00000546378 DCCP43146 1447 aa17.15■□□□□ 0.34
HOXC11-202ENST00000546378 CPLX3Q8WVH0 158 aa17.15■□□□□ 0.34
HOXC11-202ENST00000546378 CPLX1O14810 134 aa17.14■□□□□ 0.33
HOXC11-202ENST00000546378 NEXNQ0ZGT2 675 aa17.14■□□□□ 0.33
HOXC11-202ENST00000546378 XAGE3Q8WTP9 111 aa17.14■□□□□ 0.33
HOXC11-202ENST00000546378 COBLO75128 1261 aa17.14■□□□□ 0.33
HOXC11-202ENST00000546378 PHKG2P15735 406 aa17.14■□□□□ 0.33
HOXC11-202ENST00000546378 PPARDQ03181 441 aa17.14■□□□□ 0.33
HOXC11-202ENST00000546378 ZCRB1Q8TBF4 217 aaKnown RBP17.14■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 21 ms