RNA–Protein interactions for RNA: ENST00000545694.1

SYNE1-239, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 3

Gene SYNE1, Length 526 nt, Biotype retained intron, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-239ENST00000545694 DCTPP1Q9H773 170 aa7.72□□□□□ -1.17
SYNE1-239ENST00000545694 PLCH1Q4KWH8 1693 aa7.72□□□□□ -1.17
SYNE1-239ENST00000545694 ERBB4Q15303 1308 aa7.72□□□□□ -1.17
SYNE1-239ENST00000545694 LAMB4A4D0S4 1761 aa7.71□□□□□ -1.17
SYNE1-239ENST00000545694 TOM1O60784 492 aa7.71□□□□□ -1.18
SYNE1-239ENST00000545694 DDX58O95786 925 aaKnown RBP7.71□□□□□ -1.18
SYNE1-239ENST00000545694 GNAI2P04899 355 aa7.71□□□□□ -1.18
SYNE1-239ENST00000545694 RGS3P49796 1198 aa7.71□□□□□ -1.18
SYNE1-239ENST00000545694 EVA1CP58658 441 aa7.71□□□□□ -1.18
SYNE1-239ENST00000545694 CHRNA2Q15822 529 aa7.71□□□□□ -1.18
SYNE1-239ENST00000545694 KRT24Q2M2I5 525 aa7.71□□□□□ -1.18
SYNE1-239ENST00000545694 ZNF790Q6PG37 636 aa7.71□□□□□ -1.18
SYNE1-239ENST00000545694 TTC5Q8N0Z6 440 aa7.71□□□□□ -1.18
SYNE1-239ENST00000545694 HPS1Q92902 700 aa7.71□□□□□ -1.18
SYNE1-239ENST00000545694 KDM6AO15550 1401 aaPredicted RBP7.7□□□□□ -1.18
SYNE1-239ENST00000545694 PHLPP1O60346 1717 aa7.7□□□□□ -1.18
SYNE1-239ENST00000545694 NWD2Q9ULI1 1742 aa7.7□□□□□ -1.18
SYNE1-239ENST00000545694 UBR2Q8IWV8 1755 aa7.7□□□□□ -1.18
SYNE1-239ENST00000545694 ALDH1L1O75891 902 aa7.7□□□□□ -1.18
SYNE1-239ENST00000545694 SNRPA1P09661 255 aaKnown RBP7.7□□□□□ -1.18
SYNE1-239ENST00000545694 SKOR1P84550 965 aa7.7□□□□□ -1.18
SYNE1-239ENST00000545694 RC3H1Q5TC82 1133 aaKnown RBP7.7□□□□□ -1.18
SYNE1-239ENST00000545694 CHD1LQ86WJ1 897 aa7.7□□□□□ -1.18
SYNE1-239ENST00000545694 FMNL2Q96PY5 1086 aa7.7□□□□□ -1.18
SYNE1-239ENST00000545694 UPF2Q9HAU5 1272 aaKnown RBP7.7□□□□□ -1.18
SYNE1-239ENST00000545694 DDX21Q9NR30 783 aaKnown RBP eCLIP7.7□□□□□ -1.18
SYNE1-239ENST00000545694 KAT6BQ8WYB5 2073 aa7.7□□□□□ -1.18
SYNE1-239ENST00000545694 LRP6O75581 1613 aa7.7□□□□□ -1.18
SYNE1-239ENST00000545694 SHANK3Q9BYB0 1731 aa7.69□□□□□ -1.18
SYNE1-239ENST00000545694 WNK3Q9BYP7 1800 aa7.69□□□□□ -1.18
SYNE1-239ENST00000545694 CYP27B1O15528 508 aa7.69□□□□□ -1.18
SYNE1-239ENST00000545694 SNRPBP14678 240 aaKnown RBP7.69□□□□□ -1.18
SYNE1-239ENST00000545694 CABP4P57796 275 aa7.69□□□□□ -1.18
SYNE1-239ENST00000545694 C8orf34Q49A92 452 aa7.69□□□□□ -1.18
SYNE1-239ENST00000545694 BMP2KLQ5H9B9 411 aa7.69□□□□□ -1.18
SYNE1-239ENST00000545694 CEP85Q6P2H3 762 aa7.69□□□□□ -1.18
SYNE1-239ENST00000545694 DNAAF4Q8WXU2 420 aa7.69□□□□□ -1.18
SYNE1-239ENST00000545694 IPO9Q96P70 1041 aaKnown RBP7.69□□□□□ -1.18
SYNE1-239ENST00000545694 SRCIN1Q9C0H9 1055 aa7.69□□□□□ -1.18
SYNE1-239ENST00000545694 ATP13A2Q9NQ11 1180 aa7.69□□□□□ -1.18
SYNE1-239ENST00000545694 THRAP3Q9Y2W1 955 aaKnown RBP7.69□□□□□ -1.18
SYNE1-239ENST00000545694 COL16A1Q07092 1604 aaPredicted RBP7.68□□□□□ -1.18
SYNE1-239ENST00000545694 PAPPAQ13219 1627 aa7.68□□□□□ -1.18
SYNE1-239ENST00000545694 WFS1O76024 890 aa7.68□□□□□ -1.18
SYNE1-239ENST00000545694 HSP90AB4PQ58FF6 505 aa7.68□□□□□ -1.18
SYNE1-239ENST00000545694 SLC4A10Q6U841 1118 aa7.68□□□□□ -1.18
SYNE1-239ENST00000545694 KSR2Q6VAB6 950 aa7.68□□□□□ -1.18
SYNE1-239ENST00000545694 G2E3Q7L622 706 aa7.68□□□□□ -1.18
SYNE1-239ENST00000545694 NUTM1Q86Y26 1132 aa7.68□□□□□ -1.18
SYNE1-239ENST00000545694 KRI1Q8N9T8 703 aaKnown RBP7.68□□□□□ -1.18
SYNE1-239ENST00000545694 NFATC2IPQ8NCF5 419 aa7.68□□□□□ -1.18
SYNE1-239ENST00000545694 TEX13AQ9BXU3 409 aaPredicted RBP7.68□□□□□ -1.18
SYNE1-239ENST00000545694 GPCPD1Q9NPB8 672 aa7.68□□□□□ -1.18
SYNE1-239ENST00000545694 FAM217BQ9NTX9 383 aaPredicted RBP7.68□□□□□ -1.18
SYNE1-239ENST00000545694 RAB11FIP3O75154 756 aa7.67□□□□□ -1.18
SYNE1-239ENST00000545694 UBTFL1P0CB47 393 aaPredicted RBP7.67□□□□□ -1.18
SYNE1-239ENST00000545694 JUNDP17535 347 aa7.67□□□□□ -1.18
SYNE1-239ENST00000545694 EIF2S2P20042 333 aaKnown RBP7.67□□□□□ -1.18
SYNE1-239ENST00000545694 CLCN1P35523 988 aa7.67□□□□□ -1.18
SYNE1-239ENST00000545694 ATP8B2P98198 1209 aa7.67□□□□□ -1.18
SYNE1-239ENST00000545694 ANKRD45Q5TZF3 282 aa7.67□□□□□ -1.18
SYNE1-239ENST00000545694 PTCRAQ6ISU1 281 aaPredicted RBP7.67□□□□□ -1.18
SYNE1-239ENST00000545694 LARP1Q6PKG0 1096 aaKnown RBP7.67□□□□□ -1.18
SYNE1-239ENST00000545694 SIRT2Q8IXJ6 389 aa7.67□□□□□ -1.18
SYNE1-239ENST00000545694 VSIG10Q8N0Z9 540 aa7.67□□□□□ -1.18
SYNE1-239ENST00000545694 MEIS3Q99687 375 aa7.67□□□□□ -1.18
SYNE1-239ENST00000545694 CHPF2Q9P2E5 772 aa7.67□□□□□ -1.18
SYNE1-239ENST00000545694 C5P01031 1676 aa7.67□□□□□ -1.18
SYNE1-239ENST00000545694 NEXNQ0ZGT2 675 aa7.66□□□□□ -1.18
SYNE1-239ENST00000545694 BEND3Q5T5X7 828 aa7.66□□□□□ -1.18
SYNE1-239ENST00000545694 LINS1Q8NG48 757 aa7.66□□□□□ -1.18
SYNE1-239ENST00000545694 REPIN1Q9BWE0 567 aaKnown RBP7.66□□□□□ -1.18
SYNE1-239ENST00000545694 USP44Q9H0E7 712 aa7.66□□□□□ -1.18
SYNE1-239ENST00000545694 DISP2A7MBM2 1401 aa7.66□□□□□ -1.18
SYNE1-239ENST00000545694 ITGB4P16144 1822 aa7.66□□□□□ -1.18
SYNE1-239ENST00000545694 PI4KAP2A4QPH2 592 aa7.65□□□□□ -1.18
SYNE1-239ENST00000545694 F6X3S4 739 aa7.65□□□□□ -1.18
SYNE1-239ENST00000545694 UTYO14607 1347 aa7.65□□□□□ -1.18
SYNE1-239ENST00000545694 KCNQ3O43525 872 aa7.65□□□□□ -1.18
SYNE1-239ENST00000545694 ALDH1A1P00352 501 aa7.65□□□□□ -1.18
SYNE1-239ENST00000545694 COL15A1P39059 1388 aa7.65□□□□□ -1.18
SYNE1-239ENST00000545694 NFX1Q12986 1120 aaKnown RBP7.65□□□□□ -1.18
SYNE1-239ENST00000545694 MTX1Q13505 466 aa7.65□□□□□ -1.18
SYNE1-239ENST00000545694 TNS2Q63HR2 1409 aa7.65□□□□□ -1.18
SYNE1-239ENST00000545694 NRAPQ86VF7 1730 aa7.65□□□□□ -1.18
SYNE1-239ENST00000545694 PI4KAP1Q8N8J0 262 aa7.65□□□□□ -1.18
SYNE1-239ENST00000545694 IL27Q8NEV9 243 aa7.65□□□□□ -1.18
SYNE1-239ENST00000545694 OSBPL3Q9H4L5 887 aa7.65□□□□□ -1.18
SYNE1-239ENST00000545694 PHAXQ9H814 394 aaKnown RBP7.65□□□□□ -1.18
SYNE1-239ENST00000545694 STRN4Q9NRL3 753 aa7.65□□□□□ -1.18
SYNE1-239ENST00000545694 BTG4Q9NY30 223 aa7.65□□□□□ -1.18
SYNE1-239ENST00000545694 ADCY9O60503 1353 aa7.64□□□□□ -1.19
SYNE1-239ENST00000545694 AOX1Q06278 1338 aa7.64□□□□□ -1.19
SYNE1-239ENST00000545694 C6orf229H3BNL8 230 aa7.64□□□□□ -1.19
SYNE1-239ENST00000545694 EXOC5O00471 708 aa7.64□□□□□ -1.19
SYNE1-239ENST00000545694 WNT7BP56706 349 aa7.64□□□□□ -1.19
SYNE1-239ENST00000545694 SSH3Q8TE77 659 aa7.64□□□□□ -1.19
SYNE1-239ENST00000545694 ZNF496Q96IT1 587 aaPredicted RBP7.64□□□□□ -1.19
SYNE1-239ENST00000545694 LNPKQ9C0E8 428 aa7.64□□□□□ -1.19
SYNE1-239ENST00000545694 C1orf115Q9H7X2 142 aa7.64□□□□□ -1.19
Retrieved 100 of 20,778 RNA–protein pairs in 23.3 ms