RNA–Protein interactions for RNA: ENST00000543633.5

VPS33A-208, Transcript of VPS33A, CORVET/HOPS core subunit, humanhuman

TSL 5

Gene VPS33A, Length 2,019 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33A-208ENST00000543633 TRIM5Q9C035 493 aa16.16■□□□□ 0.18
VPS33A-208ENST00000543633 PRDM4Q9UKN5 801 aa16.16■□□□□ 0.18
VPS33A-208ENST00000543633 RGPD5Q99666 1765 aa16.16■□□□□ 0.18
VPS33A-208ENST00000543633 PARP4Q9UKK3 1724 aaKnown RBP16.16■□□□□ 0.18
VPS33A-208ENST00000543633 PFKFB2O60825 505 aa16.16■□□□□ 0.18
VPS33A-208ENST00000543633 NR1I2O75469 434 aa16.16■□□□□ 0.18
VPS33A-208ENST00000543633 ZSCAN25Q6NSZ9 544 aa16.16■□□□□ 0.18
VPS33A-208ENST00000543633 ZNF790Q6PG37 636 aa16.16■□□□□ 0.18
VPS33A-208ENST00000543633 CCDC186Q7Z3E2 898 aa16.16■□□□□ 0.18
VPS33A-208ENST00000543633 CKAP2LQ8IYA6 745 aa16.16■□□□□ 0.18
VPS33A-208ENST00000543633 MRFAP1L1Q96HT8 127 aa16.16■□□□□ 0.18
VPS33A-208ENST00000543633 DBNLQ9UJU6 430 aaKnown RBP16.16■□□□□ 0.18
VPS33A-208ENST00000543633 TAF6LQ9Y6J9 622 aa16.16■□□□□ 0.18
VPS33A-208ENST00000543633 SOS2Q07890 1332 aaPredicted RBP16.15■□□□□ 0.18
VPS33A-208ENST00000543633 KDM6AO15550 1401 aaPredicted RBP16.15■□□□□ 0.18
VPS33A-208ENST00000543633 PRAMEF22A3QJZ6 481 aa16.15■□□□□ 0.18
VPS33A-208ENST00000543633 H3BQV1 296 aa16.15■□□□□ 0.18
VPS33A-208ENST00000543633 MCMDC2Q4G0Z9 681 aa16.15■□□□□ 0.18
VPS33A-208ENST00000543633 IFFO2Q5TF58 517 aa16.15■□□□□ 0.18
VPS33A-208ENST00000543633 PDCL2Q8N4E4 241 aa16.15■□□□□ 0.18
VPS33A-208ENST00000543633 SIL1Q9H173 461 aa16.15■□□□□ 0.18
VPS33A-208ENST00000543633 TFIP11Q9UBB9 837 aaKnown RBP16.15■□□□□ 0.18
VPS33A-208ENST00000543633 PAXBP1Q9Y5B6 917 aa16.15■□□□□ 0.18
VPS33A-208ENST00000543633 PKD1L3Q7Z443 1732 aa16.14■□□□□ 0.17
VPS33A-208ENST00000543633 COL9A3Q14050 684 aaPredicted RBP16.14■□□□□ 0.17
VPS33A-208ENST00000543633 STX1AQ16623 288 aa16.14■□□□□ 0.17
VPS33A-208ENST00000543633 TCEANC2Q96MN5 208 aa16.14■□□□□ 0.17
VPS33A-208ENST00000543633 AGXT2Q9BYV1 514 aa16.14■□□□□ 0.17
VPS33A-208ENST00000543633 SLC52A2Q9HAB3 445 aa16.14■□□□□ 0.17
VPS33A-208ENST00000543633 RCOR1Q9UKL0 485 aa16.14■□□□□ 0.17
VPS33A-208ENST00000543633 PTPN12Q05209 780 aaKnown RBP16.14■□□□□ 0.17
VPS33A-208ENST00000543633 Q6ZUG5 572 aa16.14■□□□□ 0.17
VPS33A-208ENST00000543633 DRC7Q8IY82 874 aa16.14■□□□□ 0.17
VPS33A-208ENST00000543633 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP16.14■□□□□ 0.17
VPS33A-208ENST00000543633 NHSL1Q5SYE7 1610 aa16.13■□□□□ 0.17
VPS33A-208ENST00000543633 JAK2O60674 1132 aa16.13■□□□□ 0.17
VPS33A-208ENST00000543633 DMTNQ08495 405 aa16.13■□□□□ 0.17
VPS33A-208ENST00000543633 AIMP1Q12904 312 aaKnown RBP16.13■□□□□ 0.17
VPS33A-208ENST00000543633 STK3Q13188 491 aa16.13■□□□□ 0.17
VPS33A-208ENST00000543633 XAGE3Q8WTP9 111 aa16.13■□□□□ 0.17
VPS33A-208ENST00000543633 FEZ1Q99689 392 aa16.13■□□□□ 0.17
VPS33A-208ENST00000543633 DSCC1Q9BVC3 393 aa16.13■□□□□ 0.17
VPS33A-208ENST00000543633 CLIP2Q9UDT6 1046 aa16.13■□□□□ 0.17
VPS33A-208ENST00000543633 CHMP3Q9Y3E7 222 aa16.13■□□□□ 0.17
VPS33A-208ENST00000543633 ZBTB7CA1YPR0 619 aa16.12■□□□□ 0.17
VPS33A-208ENST00000543633 IQCB1Q15051 598 aa16.12■□□□□ 0.17
VPS33A-208ENST00000543633 KBTBD3Q8NAB2 608 aa16.12■□□□□ 0.17
VPS33A-208ENST00000543633 ZNF396Q96N95 335 aaPredicted RBP16.12■□□□□ 0.17
VPS33A-208ENST00000543633 MYD88Q99836 296 aa16.12■□□□□ 0.17
VPS33A-208ENST00000543633 DNAJC25Q9H1X3 360 aa16.12■□□□□ 0.17
VPS33A-208ENST00000543633 GPR108Q9NPR9 543 aa16.12■□□□□ 0.17
VPS33A-208ENST00000543633 HELLSQ9NRZ9 838 aa16.12■□□□□ 0.17
VPS33A-208ENST00000543633 ERBB3P21860 1342 aa16.12■□□□□ 0.17
VPS33A-208ENST00000543633 GLI3P10071 1580 aa16.12■□□□□ 0.17
VPS33A-208ENST00000543633 GOLGA6L19H0YKK7 550 aa16.12■□□□□ 0.17
VPS33A-208ENST00000543633 CYP21A2P08686 494 aa16.12■□□□□ 0.17
VPS33A-208ENST00000543633 HSP90B1P14625 803 aaKnown RBP16.12■□□□□ 0.17
VPS33A-208ENST00000543633 EPHA10Q5JZY3 1008 aa16.12■□□□□ 0.17
VPS33A-208ENST00000543633 PPP4R3BQ5MIZ7 849 aa16.12■□□□□ 0.17
VPS33A-208ENST00000543633 DHX32Q7L7V1 743 aaKnown RBP16.12■□□□□ 0.17
VPS33A-208ENST00000543633 LRP10Q7Z4F1 713 aa16.12■□□□□ 0.17
VPS33A-208ENST00000543633 NSUN7Q8NE18 718 aaKnown RBP16.12■□□□□ 0.17
VPS33A-208ENST00000543633 GTPBP4Q9BZE4 634 aaKnown RBP16.12■□□□□ 0.17
VPS33A-208ENST00000543633 SALL1Q9NSC2 1324 aa16.12■□□□□ 0.17
VPS33A-208ENST00000543633 ADD1P35611 737 aaKnown RBP16.11■□□□□ 0.17
VPS33A-208ENST00000543633 RBM6P78332 1123 aaKnown RBP16.11■□□□□ 0.17
VPS33A-208ENST00000543633 TSC1Q92574 1164 aa16.11■□□□□ 0.17
VPS33A-208ENST00000543633 KCND1Q9NSA2 647 aa16.11■□□□□ 0.17
VPS33A-208ENST00000543633 SCRN1Q12765 414 aa16.11■□□□□ 0.17
VPS33A-208ENST00000543633 TFCP2Q12800 502 aa16.11■□□□□ 0.17
VPS33A-208ENST00000543633 CCDC73Q6ZRK6 1079 aa16.11■□□□□ 0.17
VPS33A-208ENST00000543633 ANKRD13DQ6ZTN6 518 aa16.11■□□□□ 0.17
VPS33A-208ENST00000543633 FBXL16Q8N461 479 aa16.11■□□□□ 0.17
VPS33A-208ENST00000543633 KLHDC4Q8TBB5 520 aa16.11■□□□□ 0.17
VPS33A-208ENST00000543633 NUP188Q5SRE5 1749 aa16.1■□□□□ 0.17
VPS33A-208ENST00000543633 DTNBO60941 627 aa16.1■□□□□ 0.17
VPS33A-208ENST00000543633 DHX8Q14562 1220 aaKnown RBP16.1■□□□□ 0.17
VPS33A-208ENST00000543633 COPS6Q7L5N1 327 aa16.1■□□□□ 0.17
VPS33A-208ENST00000543633 JARID2Q92833 1246 aaPredicted RBP16.1■□□□□ 0.17
VPS33A-208ENST00000543633 ANO10Q9NW15 660 aa16.1■□□□□ 0.17
VPS33A-208ENST00000543633 DDX60Q8IY21 1712 aaKnown RBP16.1■□□□□ 0.17
VPS33A-208ENST00000543633 SNRPA1P09661 255 aaKnown RBP16.09■□□□□ 0.17
VPS33A-208ENST00000543633 TNNT1P13805 278 aa16.09■□□□□ 0.17
VPS33A-208ENST00000543633 ZSCAN20P17040 1043 aaPredicted RBP16.09■□□□□ 0.17
VPS33A-208ENST00000543633 FAM160A1Q05DH4 1040 aa16.09■□□□□ 0.17
VPS33A-208ENST00000543633 RGS22Q8NE09 1264 aa16.09■□□□□ 0.17
VPS33A-208ENST00000543633 EDC3Q96F86 508 aaKnown RBP16.09■□□□□ 0.17
VPS33A-208ENST00000543633 AXIN2Q9Y2T1 843 aa16.09■□□□□ 0.17
VPS33A-208ENST00000543633 TJP1Q07157 1748 aa16.09■□□□□ 0.17
VPS33A-208ENST00000543633 COL18A1P39060 1754 aa16.09■□□□□ 0.17
VPS33A-208ENST00000543633 LRMPQ12912 555 aa16.09■□□□□ 0.17
VPS33A-208ENST00000543633 CABLES1Q8TDN4 633 aa16.09■□□□□ 0.17
VPS33A-208ENST00000543633 CACTINQ8WUQ7 758 aaKnown RBP16.09■□□□□ 0.17
VPS33A-208ENST00000543633 RAPGEF4Q8WZA2 1011 aa16.09■□□□□ 0.17
VPS33A-208ENST00000543633 ZNF274Q96GC6 653 aaPredicted RBP16.09■□□□□ 0.17
VPS33A-208ENST00000543633 PTPDC1A2A3K4 754 aa16.08■□□□□ 0.16
VPS33A-208ENST00000543633 KINO60870 393 aaKnown RBP16.08■□□□□ 0.16
VPS33A-208ENST00000543633 PHKG2P15735 406 aa16.08■□□□□ 0.16
VPS33A-208ENST00000543633 CASP7P55210 303 aa16.08■□□□□ 0.16
VPS33A-208ENST00000543633 EXOSC10Q01780 885 aaKnown RBP16.08■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 10.8 ms