RNA–Protein interactions for RNA: ENST00000543140.5

COL4A1-204, Transcript of collagen type IV alpha 1 chain, humanhuman

TSL 1 (best) BASIC

Gene COL4A1, Length 2,547 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1-204ENST00000543140 ANO8Q9HCE9 1232 aaPredicted RBP19.51■□□□□ 0.71
COL4A1-204ENST00000543140 HMG20BQ9P0W2 317 aa19.51■□□□□ 0.71
COL4A1-204ENST00000543140 RFX7Q2KHR2 1363 aa19.5■□□□□ 0.71
COL4A1-204ENST00000543140 RPS6KB1P23443 525 aa19.5■□□□□ 0.71
COL4A1-204ENST00000543140 GJB2P29033 226 aa19.5■□□□□ 0.71
COL4A1-204ENST00000543140 HSP90AB3PQ58FF7 597 aa19.5■□□□□ 0.71
COL4A1-204ENST00000543140 TTLL11Q8NHH1 800 aa19.5■□□□□ 0.71
COL4A1-204ENST00000543140 XAGE2Q96GT9 111 aa19.5■□□□□ 0.71
COL4A1-204ENST00000543140 SH2B1Q9NRF2 756 aaPredicted RBP19.5■□□□□ 0.71
COL4A1-204ENST00000543140 IRS4O14654 1257 aaPredicted RBP19.5■□□□□ 0.71
COL4A1-204ENST00000543140 STX6O43752 255 aa19.5■□□□□ 0.71
COL4A1-204ENST00000543140 ITGA6P23229 1130 aa19.5■□□□□ 0.71
COL4A1-204ENST00000543140 PALLDQ8WX93 1383 aa19.49■□□□□ 0.71
COL4A1-204ENST00000543140 ZSCAN23Q3MJ62 389 aa19.49■□□□□ 0.71
COL4A1-204ENST00000543140 MARCH10Q8NA82 808 aaPredicted RBP19.49■□□□□ 0.71
COL4A1-204ENST00000543140 ISY1Q9ULR0 285 aaKnown RBP19.49■□□□□ 0.71
COL4A1-204ENST00000543140 TTC39AQ5SRH9 613 aa19.49■□□□□ 0.71
COL4A1-204ENST00000543140 LDHAL6AQ6ZMR3 332 aa19.49■□□□□ 0.71
COL4A1-204ENST00000543140 AKAP2Q9Y2D5 859 aa19.49■□□□□ 0.71
COL4A1-204ENST00000543140 LTBP4Q8N2S1 1624 aa19.48■□□□□ 0.71
COL4A1-204ENST00000543140 CDHR2Q9BYE9 1310 aa19.48■□□□□ 0.71
COL4A1-204ENST00000543140 CYP21A2P08686 494 aa19.48■□□□□ 0.71
COL4A1-204ENST00000543140 ZSCAN22P10073 491 aaPredicted RBP19.48■□□□□ 0.71
COL4A1-204ENST00000543140 IL6STP40189 918 aaPredicted RBP19.48■□□□□ 0.71
COL4A1-204ENST00000543140 TSGA10IPQ3SY00 556 aa19.48■□□□□ 0.71
COL4A1-204ENST00000543140 CCDC158Q5M9N0 1113 aa19.48■□□□□ 0.71
COL4A1-204ENST00000543140 U3KPZ7 1027 aaPredicted RBP19.48■□□□□ 0.71
COL4A1-204ENST00000543140 SH3TC1Q8TE82 1336 aa19.48■□□□□ 0.71
COL4A1-204ENST00000543140 FAM177BA6PVY3 158 aa19.48■□□□□ 0.71
COL4A1-204ENST00000543140 ATP6V1AP38606 617 aa19.48■□□□□ 0.71
COL4A1-204ENST00000543140 CTSWP56202 376 aa19.48■□□□□ 0.71
COL4A1-204ENST00000543140 TOB2Q14106 344 aaPredicted RBP19.48■□□□□ 0.71
COL4A1-204ENST00000543140 CDCA7Q9BWT1 371 aaPredicted RBP19.48■□□□□ 0.71
COL4A1-204ENST00000543140 ANKRD36CQ5JPF3 1778 aa19.47■□□□□ 0.71
COL4A1-204ENST00000543140 SCARF1Q14162 830 aa19.47■□□□□ 0.71
COL4A1-204ENST00000543140 METTL24Q5JXM2 366 aa19.47■□□□□ 0.71
COL4A1-204ENST00000543140 UBN2Q6ZU65 1347 aa19.47■□□□□ 0.71
COL4A1-204ENST00000543140 STK3Q13188 491 aa19.47■□□□□ 0.71
COL4A1-204ENST00000543140 ZMYM1Q5SVZ6 1142 aa19.47■□□□□ 0.71
COL4A1-204ENST00000543140 MYH3P11055 1940 aa19.46■□□□□ 0.71
COL4A1-204ENST00000543140 RNF113AO15541 343 aaKnown RBP19.46■□□□□ 0.71
COL4A1-204ENST00000543140 TPRNQ4KMQ1 711 aa19.46■□□□□ 0.71
COL4A1-204ENST00000543140 PI16Q6UXB8 463 aa19.46■□□□□ 0.71
COL4A1-204ENST00000543140 NEK1Q96PY6 1258 aa19.46■□□□□ 0.71
COL4A1-204ENST00000543140 CNNM1Q9NRU3 951 aa19.46■□□□□ 0.71
COL4A1-204ENST00000543140 HELLSQ9NRZ9 838 aa19.46■□□□□ 0.71
COL4A1-204ENST00000543140 TMEM63CQ9P1W3 806 aa19.46■□□□□ 0.71
COL4A1-204ENST00000543140 FBXO3Q9UK99 471 aa19.46■□□□□ 0.71
COL4A1-204ENST00000543140 THRAP3Q9Y2W1 955 aaKnown RBP19.46■□□□□ 0.71
COL4A1-204ENST00000543140 RIPOR2Q9Y4F9 1068 aa19.46■□□□□ 0.71
COL4A1-204ENST00000543140 NRAPQ86VF7 1730 aa19.46■□□□□ 0.71
COL4A1-204ENST00000543140 ANKRD18BA2A2Z9 1011 aa19.46■□□□□ 0.71
COL4A1-204ENST00000543140 INTS5Q6P9B9 1019 aaKnown RBP19.46■□□□□ 0.71
COL4A1-204ENST00000543140 A0A0G2JLW4 131 aa19.45■□□□□ 0.7
COL4A1-204ENST00000543140 ERVV-1B6SEH8 477 aa19.45■□□□□ 0.7
COL4A1-204ENST00000543140 GADD45BO75293 160 aaPredicted RBP19.45■□□□□ 0.7
COL4A1-204ENST00000543140 CRKLP46109 303 aaKnown RBP19.45■□□□□ 0.7
COL4A1-204ENST00000543140 KRT32Q14532 448 aa19.45■□□□□ 0.7
COL4A1-204ENST00000543140 ANKRD1Q15327 319 aa19.45■□□□□ 0.7
COL4A1-204ENST00000543140 USP48Q86UV5 1035 aa19.45■□□□□ 0.7
COL4A1-204ENST00000543140 CNPY2Q9Y2B0 182 aa19.45■□□□□ 0.7
COL4A1-204ENST00000543140 ATP2B3Q16720 1220 aa19.45■□□□□ 0.7
COL4A1-204ENST00000543140 LRRC2Q9BYS8 371 aa19.45■□□□□ 0.7
COL4A1-204ENST00000543140 MAST3O60307 1309 aa19.45■□□□□ 0.7
COL4A1-204ENST00000543140 SPATA31A5Q5VU36 1347 aa19.45■□□□□ 0.7
COL4A1-204ENST00000543140 SPATA31A7Q8IWB4 1347 aa19.45■□□□□ 0.7
COL4A1-204ENST00000543140 LOC102724428A0A0B4J2F2 783 aa19.44■□□□□ 0.7
COL4A1-204ENST00000543140 SIK1P57059 783 aa19.44■□□□□ 0.7
COL4A1-204ENST00000543140 CCDC87Q9NVE4 849 aa19.44■□□□□ 0.7
COL4A1-204ENST00000543140 RIC1Q4ADV7 1423 aa19.44■□□□□ 0.7
COL4A1-204ENST00000543140 VPS37CA5D8V6 355 aaPredicted RBP19.44■□□□□ 0.7
COL4A1-204ENST00000543140 M0R2C6 588 aa19.44■□□□□ 0.7
COL4A1-204ENST00000543140 F13A1P00488 732 aa19.44■□□□□ 0.7
COL4A1-204ENST00000543140 EIF5P55010 431 aaKnown RBP19.44■□□□□ 0.7
COL4A1-204ENST00000543140 ZNF445P59923 1031 aa19.44■□□□□ 0.7
COL4A1-204ENST00000543140 STOX1Q6ZVD7 989 aa19.44■□□□□ 0.7
COL4A1-204ENST00000543140 ZNF34Q8IZ26 560 aa19.44■□□□□ 0.7
COL4A1-204ENST00000543140 PDE8AO60658 829 aa19.43■□□□□ 0.7
COL4A1-204ENST00000543140 HSPD1P10809 573 aaKnown RBP19.43■□□□□ 0.7
COL4A1-204ENST00000543140 HCLS1P14317 486 aaPredicted RBP19.43■□□□□ 0.7
COL4A1-204ENST00000543140 ZAP70P43403 619 aa19.43■□□□□ 0.7
COL4A1-204ENST00000543140 ITPK1Q13572 414 aa19.43■□□□□ 0.7
COL4A1-204ENST00000543140 MTMR6Q9Y217 621 aa19.43■□□□□ 0.7
COL4A1-204ENST00000543140 KCNQ2O43526 872 aa19.43■□□□□ 0.7
COL4A1-204ENST00000543140 Q6ZUG5 572 aa19.43■□□□□ 0.7
COL4A1-204ENST00000543140 PPIL4Q8WUA2 492 aaKnown RBP eCLIP19.43■□□□□ 0.7
COL4A1-204ENST00000543140 OSBP2Q969R2 916 aa19.43■□□□□ 0.7
COL4A1-204ENST00000543140 MBD3O95983 291 aa19.42■□□□□ 0.7
COL4A1-204ENST00000543140 WASHC4Q2M389 1173 aa19.42■□□□□ 0.7
COL4A1-204ENST00000543140 SUSD4Q5VX71 490 aa19.42■□□□□ 0.7
COL4A1-204ENST00000543140 ALDH8A1Q9H2A2 487 aaPredicted RBP19.42■□□□□ 0.7
COL4A1-204ENST00000543140 SYCE3A1L190 88 aa19.42■□□□□ 0.7
COL4A1-204ENST00000543140 ZBTB4Q9P1Z0 1013 aaPredicted RBP19.42■□□□□ 0.7
COL4A1-204ENST00000543140 LARP1BQ659C4 914 aaKnown RBP19.41■□□□□ 0.7
COL4A1-204ENST00000543140 HELBQ8NG08 1087 aaPredicted RBP19.41■□□□□ 0.7
COL4A1-204ENST00000543140 DSCC1Q9BVC3 393 aa19.41■□□□□ 0.7
COL4A1-204ENST00000543140 SLIT2O94813 1529 aa19.41■□□□□ 0.7
COL4A1-204ENST00000543140 MYH14Q7Z406 1995 aaKnown RBP19.41■□□□□ 0.7
COL4A1-204ENST00000543140 HSP90B1P14625 803 aaKnown RBP19.41■□□□□ 0.7
COL4A1-204ENST00000543140 FGD1P98174 961 aa19.41■□□□□ 0.7
Retrieved 100 of 20,778 RNA–protein pairs in 10.8 ms