RNA–Protein interactions for RNA: ENST00000542570.5

TOP3A-208, Transcript of DNA topoisomerase III alpha, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TOP3A, Length 4,116 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TOP3A-208ENST00000542570 ANKARQ7Z5J8 1434 aa11.94□□□□□ -0.5
TOP3A-208ENST00000542570 MBD4O95243 580 aa11.94□□□□□ -0.5
TOP3A-208ENST00000542570 SASH1O94885 1247 aa11.94□□□□□ -0.5
TOP3A-208ENST00000542570 KRT85P78386 507 aa11.94□□□□□ -0.5
TOP3A-208ENST00000542570 KIAA2012Q0VF49 1180 aa11.94□□□□□ -0.5
TOP3A-208ENST00000542570 TPD52L1Q16890 204 aaPredicted RBP11.94□□□□□ -0.5
TOP3A-208ENST00000542570 NASPP49321 788 aaPredicted RBP11.93□□□□□ -0.5
TOP3A-208ENST00000542570 ISM2Q6H9L7 571 aa11.93□□□□□ -0.5
TOP3A-208ENST00000542570 CKAP2LQ8IYA6 745 aa11.93□□□□□ -0.5
TOP3A-208ENST00000542570 CRACR2BQ8N4Y2 399 aaPredicted RBP11.93□□□□□ -0.5
TOP3A-208ENST00000542570 SPC24Q8NBT2 197 aa11.93□□□□□ -0.5
TOP3A-208ENST00000542570 GPR101Q96P66 508 aaPredicted RBP11.93□□□□□ -0.5
TOP3A-208ENST00000542570 SETBP1Q9Y6X0 1596 aa11.93□□□□□ -0.5
TOP3A-208ENST00000542570 TSPY2A6NKD2 308 aa11.93□□□□□ -0.5
TOP3A-208ENST00000542570 RNF113AO15541 343 aaKnown RBP11.93□□□□□ -0.5
TOP3A-208ENST00000542570 ECM2O94769 699 aaPredicted RBP11.93□□□□□ -0.5
TOP3A-208ENST00000542570 HSPA1LP34931 641 aa11.93□□□□□ -0.5
TOP3A-208ENST00000542570 GIGYF2Q6Y7W6 1299 aaKnown RBP11.93□□□□□ -0.5
TOP3A-208ENST00000542570 MYL10Q9BUA6 226 aa11.93□□□□□ -0.5
TOP3A-208ENST00000542570 CDCA7Q9BWT1 371 aaPredicted RBP11.93□□□□□ -0.5
TOP3A-208ENST00000542570 ZC3H12CQ9C0D7 883 aaKnown RBP11.93□□□□□ -0.5
TOP3A-208ENST00000542570 PDE4CQ08493 712 aa11.93□□□□□ -0.5
TOP3A-208ENST00000542570 HOMER1Q86YM7 354 aa11.93□□□□□ -0.5
TOP3A-208ENST00000542570 SLC12A7Q9Y666 1083 aa11.93□□□□□ -0.5
TOP3A-208ENST00000542570 TMEM131LA2VDJ0 1609 aa11.93□□□□□ -0.5
TOP3A-208ENST00000542570 NRXN1Q9ULB1 1477 aa11.93□□□□□ -0.5
TOP3A-208ENST00000542570 TTC41PQ6P2S7 1318 aa11.93□□□□□ -0.5
TOP3A-208ENST00000542570 SGSM2O43147 1006 aa11.92□□□□□ -0.5
TOP3A-208ENST00000542570 BAG4O95429 457 aaKnown RBP11.92□□□□□ -0.5
TOP3A-208ENST00000542570 OTUD7BQ6GQQ9 843 aa11.92□□□□□ -0.5
TOP3A-208ENST00000542570 MFSD6Q6ZSS7 791 aa11.92□□□□□ -0.5
TOP3A-208ENST00000542570 ZSCAN31Q96LW9 406 aaPredicted RBP11.92□□□□□ -0.5
TOP3A-208ENST00000542570 RIMS1Q86UR5 1692 aaKnown RBP11.92□□□□□ -0.5
TOP3A-208ENST00000542570 VWDEQ8N2E2 1590 aa11.92□□□□□ -0.5
TOP3A-208ENST00000542570 PHKA1P46020 1223 aa11.92□□□□□ -0.5
TOP3A-208ENST00000542570 DHX8Q14562 1220 aaKnown RBP11.92□□□□□ -0.5
TOP3A-208ENST00000542570 ORC3Q9UBD5 711 aaPredicted RBP11.92□□□□□ -0.5
TOP3A-208ENST00000542570 KDRP35968 1356 aa11.92□□□□□ -0.5
TOP3A-208ENST00000542570 USP31Q70CQ4 1352 aa11.92□□□□□ -0.5
TOP3A-208ENST00000542570 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP11.92□□□□□ -0.5
TOP3A-208ENST00000542570 STX6O43752 255 aa11.92□□□□□ -0.5
TOP3A-208ENST00000542570 UFL1O94874 794 aa11.92□□□□□ -0.5
TOP3A-208ENST00000542570 PKP1Q13835 747 aa11.92□□□□□ -0.5
TOP3A-208ENST00000542570 ZNF444Q8N0Y2 327 aaPredicted RBP11.92□□□□□ -0.5
TOP3A-208ENST00000542570 SAP30BPQ9UHR5 308 aaKnown RBP11.92□□□□□ -0.5
TOP3A-208ENST00000542570 CCDC171Q6TFL3 1326 aa11.92□□□□□ -0.5
TOP3A-208ENST00000542570 MAP3K15Q6ZN16 1313 aa11.92□□□□□ -0.5
TOP3A-208ENST00000542570 CDC42BPGQ6DT37 1551 aa11.92□□□□□ -0.5
TOP3A-208ENST00000542570 HEG1Q9ULI3 1381 aa11.92□□□□□ -0.5
TOP3A-208ENST00000542570 GOLGA8AA7E2F4 631 aa11.92□□□□□ -0.5
TOP3A-208ENST00000542570 GOLGA6L6A8MZA4 724 aa11.92□□□□□ -0.5
TOP3A-208ENST00000542570 KINO60870 393 aaKnown RBP11.92□□□□□ -0.5
TOP3A-208ENST00000542570 CTSWP56202 376 aa11.92□□□□□ -0.5
TOP3A-208ENST00000542570 RASEFQ8IZ41 740 aa11.92□□□□□ -0.5
TOP3A-208ENST00000542570 C8orf76Q96K31 380 aa11.92□□□□□ -0.5
TOP3A-208ENST00000542570 OVOS2A0A0J9YW53 1432 aa11.91□□□□□ -0.5
TOP3A-208ENST00000542570 OVOS2Q6IE36 1432 aa11.91□□□□□ -0.5
TOP3A-208ENST00000542570 B4E1Z4 1266 aa11.91□□□□□ -0.5
TOP3A-208ENST00000542570 UQCRFS1P1P0C7P4 283 aa11.91□□□□□ -0.5
TOP3A-208ENST00000542570 PTPN12Q05209 780 aaKnown RBP11.91□□□□□ -0.5
TOP3A-208ENST00000542570 ZBTB38Q8NAP3 1195 aaPredicted RBP11.91□□□□□ -0.5
TOP3A-208ENST00000542570 AFF2P51816 1311 aa11.91□□□□□ -0.5
TOP3A-208ENST00000542570 CD163L1Q9NR16 1453 aa11.91□□□□□ -0.5
TOP3A-208ENST00000542570 hCG_1642624A0A1W2PR95 340 aa11.91□□□□□ -0.5
TOP3A-208ENST00000542570 SUSD4Q5VX71 490 aa11.91□□□□□ -0.5
TOP3A-208ENST00000542570 SLC26A6Q9BXS9 759 aa11.91□□□□□ -0.5
TOP3A-208ENST00000542570 MCM9Q9NXL9 1143 aa11.91□□□□□ -0.5
TOP3A-208ENST00000542570 SNX14Q9Y5W7 946 aa11.91□□□□□ -0.5
TOP3A-208ENST00000542570 RPS8P62241 208 aaKnown RBP11.91□□□□□ -0.5
TOP3A-208ENST00000542570 ERFEQ4G0M1 354 aa11.91□□□□□ -0.5
TOP3A-208ENST00000542570 NLRP10Q86W26 655 aa11.91□□□□□ -0.5
TOP3A-208ENST00000542570 XBP1P17861 261 aa11.9□□□□□ -0.5
TOP3A-208ENST00000542570 TTF1Q15361 905 aaPredicted RBP11.9□□□□□ -0.5
TOP3A-208ENST00000542570 AATFQ9NY61 560 aaKnown RBP eCLIP11.9□□□□□ -0.5
TOP3A-208ENST00000542570 CNPY2Q9Y2B0 182 aa11.9□□□□□ -0.5
TOP3A-208ENST00000542570 TNS3Q68CZ2 1445 aa11.9□□□□□ -0.5
TOP3A-208ENST00000542570 PTCH1Q13635 1447 aa11.9□□□□□ -0.5
TOP3A-208ENST00000542570 GPAA1O43292 621 aa11.9□□□□□ -0.5
TOP3A-208ENST00000542570 PRC1O43663 620 aa11.9□□□□□ -0.5
TOP3A-208ENST00000542570 IQCA1Q86XH1 822 aa11.9□□□□□ -0.5
TOP3A-208ENST00000542570 PDILTQ8N807 584 aa11.9□□□□□ -0.5
TOP3A-208ENST00000542570 NCOA7Q8NI08 942 aa11.9□□□□□ -0.5
TOP3A-208ENST00000542570 EIF6P56537 245 aaKnown RBP11.9□□□□□ -0.5
TOP3A-208ENST00000542570 PARP3Q9Y6F1 533 aa11.9□□□□□ -0.5
TOP3A-208ENST00000542570 NRDCO43847 1150 aa11.89□□□□□ -0.51
TOP3A-208ENST00000542570 BRPF1P55201 1214 aaPredicted RBP11.89□□□□□ -0.51
TOP3A-208ENST00000542570 DNM1Q05193 864 aaKnown RBP11.89□□□□□ -0.51
TOP3A-208ENST00000542570 CTDSPL2Q05D32 466 aa11.89□□□□□ -0.51
TOP3A-208ENST00000542570 ADCK5Q3MIX3 580 aa11.89□□□□□ -0.51
TOP3A-208ENST00000542570 MARCH10Q8NA82 808 aaPredicted RBP11.89□□□□□ -0.51
TOP3A-208ENST00000542570 CCDC34Q96HJ3 373 aa11.89□□□□□ -0.51
TOP3A-208ENST00000542570 TRPC5Q9UL62 973 aaPredicted RBP11.89□□□□□ -0.51
TOP3A-208ENST00000542570 KBTBD3Q8NAB2 608 aa11.89□□□□□ -0.51
TOP3A-208ENST00000542570 NOC3LQ8WTT2 800 aaKnown RBP11.89□□□□□ -0.51
TOP3A-208ENST00000542570 IBTKQ9P2D0 1353 aaPredicted RBP11.89□□□□□ -0.51
TOP3A-208ENST00000542570 BIN1O00499 593 aa11.89□□□□□ -0.51
TOP3A-208ENST00000542570 SLC27A2O14975 620 aa11.89□□□□□ -0.51
TOP3A-208ENST00000542570 PUM3Q15397 648 aaKnown RBP11.89□□□□□ -0.51
TOP3A-208ENST00000542570 ZNF589Q86UQ0 364 aaPredicted RBP11.89□□□□□ -0.51
TOP3A-208ENST00000542570 SDR42E1Q8WUS8 393 aa11.89□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 11.1 ms