RNA–Protein interactions for RNA: ENST00000541770.1

CLSTN3-212, Transcript of calsyntenin 3, humanhuman

TSL 3

Gene CLSTN3, Length 568 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-212ENST00000541770 EGFRP00533 1210 aa11.25□□□□□ -0.61
CLSTN3-212ENST00000541770 XAGE3Q8WTP9 111 aa11.25□□□□□ -0.61
CLSTN3-212ENST00000541770 DPF2Q92785 391 aa11.25□□□□□ -0.61
CLSTN3-212ENST00000541770 SAGE1Q9NXZ1 904 aa11.25□□□□□ -0.61
CLSTN3-212ENST00000541770 SH3TC1Q8TE82 1336 aa11.25□□□□□ -0.61
CLSTN3-212ENST00000541770 G3V3G9 751 aa11.24□□□□□ -0.61
CLSTN3-212ENST00000541770 CHL1O00533 1208 aa11.24□□□□□ -0.61
CLSTN3-212ENST00000541770 ECE2O60344 883 aa11.24□□□□□ -0.61
CLSTN3-212ENST00000541770 ZNF853P0CG23 659 aa11.24□□□□□ -0.61
CLSTN3-212ENST00000541770 PDIA6Q15084 440 aa11.24□□□□□ -0.61
CLSTN3-212ENST00000541770 KIF4BQ2VIQ3 1234 aa11.24□□□□□ -0.61
CLSTN3-212ENST00000541770 DCAF8Q5TAQ9 597 aa11.24□□□□□ -0.61
CLSTN3-212ENST00000541770 SULF1Q8IWU6 871 aa11.24□□□□□ -0.61
CLSTN3-212ENST00000541770 KCNQ5Q9NR82 932 aa11.24□□□□□ -0.61
CLSTN3-212ENST00000541770 GNAI1P63096 354 aa11.23□□□□□ -0.61
CLSTN3-212ENST00000541770 TCIRG1Q13488 830 aa11.23□□□□□ -0.61
CLSTN3-212ENST00000541770 RTL5Q5HYW3 569 aaPredicted RBP11.23□□□□□ -0.61
CLSTN3-212ENST00000541770 TMC4Q7Z404 712 aa11.23□□□□□ -0.61
CLSTN3-212ENST00000541770 LRP10Q7Z4F1 713 aa11.23□□□□□ -0.61
CLSTN3-212ENST00000541770 CTU1Q7Z7A3 348 aaKnown RBP11.23□□□□□ -0.61
CLSTN3-212ENST00000541770 WDR63Q8IWG1 891 aa11.23□□□□□ -0.61
CLSTN3-212ENST00000541770 CELF1Q92879 486 aaKnown RBP11.23□□□□□ -0.61
CLSTN3-212ENST00000541770 EYA3Q99504 573 aa11.23□□□□□ -0.61
CLSTN3-212ENST00000541770 IFT57Q9NWB7 429 aa11.23□□□□□ -0.61
CLSTN3-212ENST00000541770 GGA3Q9NZ52 723 aa11.23□□□□□ -0.61
CLSTN3-212ENST00000541770 IL16Q14005 1332 aa11.23□□□□□ -0.61
CLSTN3-212ENST00000541770 ASTN2O75129 1339 aaPredicted RBP11.22□□□□□ -0.61
CLSTN3-212ENST00000541770 SLC10A3P09131 477 aa11.22□□□□□ -0.61
CLSTN3-212ENST00000541770 RPS12P25398 132 aaKnown RBP11.22□□□□□ -0.61
CLSTN3-212ENST00000541770 GPSM2P81274 684 aa11.22□□□□□ -0.61
CLSTN3-212ENST00000541770 SCN9AQ15858 1988 aa11.22□□□□□ -0.61
CLSTN3-212ENST00000541770 ZNF521Q96K83 1311 aa11.22□□□□□ -0.61
CLSTN3-212ENST00000541770 CSRNP1Q96S65 589 aa11.22□□□□□ -0.61
CLSTN3-212ENST00000541770 POLLQ9UGP5 575 aa11.22□□□□□ -0.61
CLSTN3-212ENST00000541770 HDAC9Q9UKV0 1011 aa11.22□□□□□ -0.61
CLSTN3-212ENST00000541770 TNRC18O15417 2968 aaPredicted RBP11.22□□□□□ -0.61
CLSTN3-212ENST00000541770 RTL9Q8NET4 1388 aa11.21□□□□□ -0.61
CLSTN3-212ENST00000541770 PRPF38BQ5VTL8 546 aaKnown RBP11.21□□□□□ -0.61
CLSTN3-212ENST00000541770 CDCA5Q96FF9 252 aa11.21□□□□□ -0.61
CLSTN3-212ENST00000541770 FAM89AQ96GI7 184 aa11.21□□□□□ -0.61
CLSTN3-212ENST00000541770 ZC3H12CQ9C0D7 883 aaKnown RBP11.21□□□□□ -0.61
CLSTN3-212ENST00000541770 SALL2Q9Y467 1007 aaPredicted RBP11.21□□□□□ -0.61
CLSTN3-212ENST00000541770 LAS1LQ9Y4W2 734 aaKnown RBP11.21□□□□□ -0.61
CLSTN3-212ENST00000541770 COL4A1P02462 1669 aa11.2□□□□□ -0.62
CLSTN3-212ENST00000541770 ATP5J2-PTCD1G3V325 749 aa11.2□□□□□ -0.62
CLSTN3-212ENST00000541770 ANGEL2Q5VTE6 544 aaKnown RBP11.2□□□□□ -0.62
CLSTN3-212ENST00000541770 RASAL3Q86YV0 1011 aa11.2□□□□□ -0.62
CLSTN3-212ENST00000541770 MBIPQ9NS73 344 aa11.2□□□□□ -0.62
CLSTN3-212ENST00000541770 HPS5Q9UPZ3 1129 aa11.2□□□□□ -0.62
CLSTN3-212ENST00000541770 TBC1D8O95759 1140 aa11.19□□□□□ -0.62
CLSTN3-212ENST00000541770 SCARF1Q14162 830 aa11.19□□□□□ -0.62
CLSTN3-212ENST00000541770 TTLL12Q14166 644 aaPredicted RBP11.19□□□□□ -0.62
CLSTN3-212ENST00000541770 KRT24Q2M2I5 525 aa11.19□□□□□ -0.62
CLSTN3-212ENST00000541770 TBC1D16Q8TBP0 767 aa11.19□□□□□ -0.62
CLSTN3-212ENST00000541770 CHPF2Q9P2E5 772 aa11.19□□□□□ -0.62
CLSTN3-212ENST00000541770 SCAF8Q9UPN6 1271 aaKnown RBP11.19□□□□□ -0.62
CLSTN3-212ENST00000541770 PSME4Q14997 1843 aa11.19□□□□□ -0.62
CLSTN3-212ENST00000541770 PAPPA2Q9BXP8 1791 aa11.18□□□□□ -0.62
CLSTN3-212ENST00000541770 UFL1O94874 794 aa11.18□□□□□ -0.62
CLSTN3-212ENST00000541770 HOXB7P09629 217 aa11.18□□□□□ -0.62
CLSTN3-212ENST00000541770 MKRN3Q13064 507 aaKnown RBP11.18□□□□□ -0.62
CLSTN3-212ENST00000541770 SF3B3Q15393 1217 aaKnown RBP11.18□□□□□ -0.62
CLSTN3-212ENST00000541770 MOB2Q70IA6 237 aa11.18□□□□□ -0.62
CLSTN3-212ENST00000541770 REM2Q8IYK8 340 aaPredicted RBP11.18□□□□□ -0.62
CLSTN3-212ENST00000541770 ANKIB1Q9P2G1 1089 aa11.18□□□□□ -0.62
CLSTN3-212ENST00000541770 SPEF2Q9C093 1822 aa11.17□□□□□ -0.62
CLSTN3-212ENST00000541770 IRS4O14654 1257 aaPredicted RBP11.17□□□□□ -0.62
CLSTN3-212ENST00000541770 VIL1P09327 827 aaKnown RBP11.17□□□□□ -0.62
CLSTN3-212ENST00000541770 RPS8P62241 208 aaKnown RBP11.17□□□□□ -0.62
CLSTN3-212ENST00000541770 GOLGA2Q08379 1002 aa11.17□□□□□ -0.62
CLSTN3-212ENST00000541770 HDGFL1Q5TGJ6 251 aa11.17□□□□□ -0.62
CLSTN3-212ENST00000541770 ANKRD13DQ6ZTN6 518 aa11.17□□□□□ -0.62
CLSTN3-212ENST00000541770 PLBD2Q8NHP8 589 aa11.17□□□□□ -0.62
CLSTN3-212ENST00000541770 ZNF296Q8WUU4 475 aaPredicted RBP11.17□□□□□ -0.62
CLSTN3-212ENST00000541770 ZBTB4Q9P1Z0 1013 aaPredicted RBP11.17□□□□□ -0.62
CLSTN3-212ENST00000541770 PDE4DIPQ5VU43 2346 aa11.17□□□□□ -0.62
CLSTN3-212ENST00000541770 UBE2Q2LH0YL09 131 aa11.16□□□□□ -0.62
CLSTN3-212ENST00000541770 PKN2Q16513 984 aaKnown RBP11.16□□□□□ -0.62
CLSTN3-212ENST00000541770 PRAMEF18Q5VWM3 479 aa11.16□□□□□ -0.62
CLSTN3-212ENST00000541770 RSBN1LQ6PCB5 846 aaPredicted RBP11.16□□□□□ -0.62
CLSTN3-212ENST00000541770 FBXW7Q969H0 707 aa11.16□□□□□ -0.62
CLSTN3-212ENST00000541770 CCDC85AQ96PX6 553 aaPredicted RBP11.16□□□□□ -0.62
CLSTN3-212ENST00000541770 ISCA1Q9BUE6 129 aa11.16□□□□□ -0.62
CLSTN3-212ENST00000541770 MYH16Q9H6N6 1097 aa11.16□□□□□ -0.62
CLSTN3-212ENST00000541770 GGA1Q9UJY5 639 aa11.16□□□□□ -0.62
CLSTN3-212ENST00000541770 FANCIQ9NVI1 1328 aa11.15□□□□□ -0.62
CLSTN3-212ENST00000541770 E9PSI1 815 aa11.15□□□□□ -0.62
CLSTN3-212ENST00000541770 HNRNPUQ00839 825 aaKnown RBP eCLIP11.15□□□□□ -0.62
CLSTN3-212ENST00000541770 TSR2Q969E8 191 aaKnown RBP11.15□□□□□ -0.62
CLSTN3-212ENST00000541770 MYOZ2Q9NPC6 264 aa11.15□□□□□ -0.62
CLSTN3-212ENST00000541770 SPINK5Q9NQ38 1064 aaPredicted RBP11.15□□□□□ -0.62
CLSTN3-212ENST00000541770 SEC31BQ9NQW1 1179 aa11.15□□□□□ -0.62
CLSTN3-212ENST00000541770 GPR25O00155 361 aa11.14□□□□□ -0.63
CLSTN3-212ENST00000541770 USP17L8P0C7I0 530 aa11.14□□□□□ -0.63
CLSTN3-212ENST00000541770 FKBP1BP68106 108 aa11.14□□□□□ -0.63
CLSTN3-212ENST00000541770 SLFN5Q08AF3 891 aa11.14□□□□□ -0.63
CLSTN3-212ENST00000541770 PRKG1Q13976 671 aa11.14□□□□□ -0.63
CLSTN3-212ENST00000541770 DUSP27Q5VZP5 1158 aa11.14□□□□□ -0.63
CLSTN3-212ENST00000541770 RIC3Q7Z5B4 369 aa11.14□□□□□ -0.63
CLSTN3-212ENST00000541770 AGBL3Q8NEM8 1001 aa11.14□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 108.9 ms