RNA–Protein interactions for RNA: ENST00000541713.5

PTPN1-202, Transcript of protein tyrosine phosphatase, non-receptor type 1, humanhuman

TSL 2 BASIC

Gene PTPN1, Length 3,469 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN1-202ENST00000541713 ATP2B1P20020 1258 aa15.99■□□□□ 0.15
PTPN1-202ENST00000541713 ANKARQ7Z5J8 1434 aa15.99■□□□□ 0.15
PTPN1-202ENST00000541713 TPM2P07951 284 aa15.99■□□□□ 0.15
PTPN1-202ENST00000541713 ARID5BQ14865 1188 aa15.99■□□□□ 0.15
PTPN1-202ENST00000541713 SF3A1Q15459 793 aaKnown RBP15.99■□□□□ 0.15
PTPN1-202ENST00000541713 HSP90AA4PQ58FG1 418 aa15.99■□□□□ 0.15
PTPN1-202ENST00000541713 PGBD1Q96JS3 809 aa15.99■□□□□ 0.15
PTPN1-202ENST00000541713 IDH1O75874 414 aaKnown RBP15.98■□□□□ 0.15
PTPN1-202ENST00000541713 CCDC57Q2TAC2 916 aa15.98■□□□□ 0.15
PTPN1-202ENST00000541713 DCAF5Q96JK2 942 aa15.98■□□□□ 0.15
PTPN1-202ENST00000541713 CWC25Q9NXE8 425 aaPredicted RBP15.98■□□□□ 0.15
PTPN1-202ENST00000541713 SCARF1Q14162 830 aa15.98■□□□□ 0.15
PTPN1-202ENST00000541713 CSPP1Q1MSJ5 1256 aa15.98■□□□□ 0.15
PTPN1-202ENST00000541713 TTC39AQ5SRH9 613 aa15.98■□□□□ 0.15
PTPN1-202ENST00000541713 CEP126Q9P2H0 1117 aa15.98■□□□□ 0.15
PTPN1-202ENST00000541713 PTPDC1A2A3K4 754 aa15.98■□□□□ 0.15
PTPN1-202ENST00000541713 PDCP20941 246 aa15.98■□□□□ 0.15
PTPN1-202ENST00000541713 ZNF165P49910 485 aa15.97■□□□□ 0.15
PTPN1-202ENST00000541713 CBX8Q9HC52 389 aa15.97■□□□□ 0.15
PTPN1-202ENST00000541713 TBC1D2BQ9UPU7 963 aa15.97■□□□□ 0.15
PTPN1-202ENST00000541713 ATP5JP18859 108 aa15.97■□□□□ 0.15
PTPN1-202ENST00000541713 RFX5P48382 616 aaPredicted RBP15.97■□□□□ 0.15
PTPN1-202ENST00000541713 ZCRB1Q8TBF4 217 aaKnown RBP15.97■□□□□ 0.15
PTPN1-202ENST00000541713 FMN2Q9NZ56 1722 aa15.97■□□□□ 0.15
PTPN1-202ENST00000541713 ASAP1Q9ULH1 1129 aa15.97■□□□□ 0.15
PTPN1-202ENST00000541713 GLIPR1L2Q4G1C9 344 aa15.96■□□□□ 0.15
PTPN1-202ENST00000541713 ZBTB9Q96C00 473 aa15.96■□□□□ 0.15
PTPN1-202ENST00000541713 MYL10Q9BUA6 226 aa15.96■□□□□ 0.15
PTPN1-202ENST00000541713 TRMT1Q9NXH9 659 aaKnown RBP15.96■□□□□ 0.15
PTPN1-202ENST00000541713 TMEM94Q12767 1356 aa15.96■□□□□ 0.15
PTPN1-202ENST00000541713 ZNF609O15014 1411 aa15.96■□□□□ 0.15
PTPN1-202ENST00000541713 A0A1B0GVL5 298 aa15.96■□□□□ 0.15
PTPN1-202ENST00000541713 SDF4Q9BRK5 362 aa15.96■□□□□ 0.15
PTPN1-202ENST00000541713 M0R2C6 588 aa15.96■□□□□ 0.14
PTPN1-202ENST00000541713 ZNF500O60304 480 aaPredicted RBP15.96■□□□□ 0.14
PTPN1-202ENST00000541713 ANKRD1Q15327 319 aa15.96■□□□□ 0.14
PTPN1-202ENST00000541713 RRP12Q5JTH9 1297 aaKnown RBP15.96■□□□□ 0.14
PTPN1-202ENST00000541713 CCAR1Q8IX12 1150 aaKnown RBP15.96■□□□□ 0.14
PTPN1-202ENST00000541713 DNAJC10Q8IXB1 793 aa15.96■□□□□ 0.14
PTPN1-202ENST00000541713 COPRSQ9NQ92 184 aa15.96■□□□□ 0.14
PTPN1-202ENST00000541713 MRVI1Q9Y6F6 885 aa15.96■□□□□ 0.14
PTPN1-202ENST00000541713 BECN2A8MW95 431 aa15.95■□□□□ 0.14
PTPN1-202ENST00000541713 RRP9O43818 475 aaKnown RBP15.95■□□□□ 0.14
PTPN1-202ENST00000541713 OSBP2Q969R2 916 aa15.95■□□□□ 0.14
PTPN1-202ENST00000541713 AIFM3Q96NN9 605 aa15.95■□□□□ 0.14
PTPN1-202ENST00000541713 USP28Q96RU2 1077 aa15.95■□□□□ 0.14
PTPN1-202ENST00000541713 TM6SF1Q9BZW5 370 aa15.95■□□□□ 0.14
PTPN1-202ENST00000541713 ARHGAP23Q9P227 1491 aa15.95■□□□□ 0.14
PTPN1-202ENST00000541713 XRN1Q8IZH2 1706 aaKnown RBP15.95■□□□□ 0.14
PTPN1-202ENST00000541713 KDM6AO15550 1401 aaPredicted RBP15.95■□□□□ 0.14
PTPN1-202ENST00000541713 TOPAZ1Q8N9V7 1692 aa15.95■□□□□ 0.14
PTPN1-202ENST00000541713 IGSF3O75054 1194 aa15.95■□□□□ 0.14
PTPN1-202ENST00000541713 ZAP70P43403 619 aa15.95■□□□□ 0.14
PTPN1-202ENST00000541713 GTF3C6Q969F1 213 aa15.95■□□□□ 0.14
PTPN1-202ENST00000541713 SPDYE4A6NLX3 237 aa15.95■□□□□ 0.14
PTPN1-202ENST00000541713 KBTBD3Q8NAB2 608 aa15.95■□□□□ 0.14
PTPN1-202ENST00000541713 NOL12Q9UGY1 213 aaKnown RBP eCLIP15.95■□□□□ 0.14
PTPN1-202ENST00000541713 V9GYY5 206 aaPredicted RBP15.95■□□□□ 0.14
PTPN1-202ENST00000541713 MEGF6O75095 1541 aa15.94■□□□□ 0.14
PTPN1-202ENST00000541713 CPLX1O14810 134 aa15.94■□□□□ 0.14
PTPN1-202ENST00000541713 HSPD1P10809 573 aaKnown RBP15.94■□□□□ 0.14
PTPN1-202ENST00000541713 MARCKSP29966 332 aaPredicted RBP15.94■□□□□ 0.14
PTPN1-202ENST00000541713 PLBD2Q8NHP8 589 aa15.94■□□□□ 0.14
PTPN1-202ENST00000541713 CNNM1Q9NRU3 951 aa15.94■□□□□ 0.14
PTPN1-202ENST00000541713 E7EWF7 191 aa15.94■□□□□ 0.14
PTPN1-202ENST00000541713 GOLGA6L19H0YKK7 550 aa15.94■□□□□ 0.14
PTPN1-202ENST00000541713 UBE2Q2Q8WVN8 375 aa15.94■□□□□ 0.14
PTPN1-202ENST00000541713 KCNF1Q9H3M0 494 aa15.94■□□□□ 0.14
PTPN1-202ENST00000541713 ADGRL3Q9HAR2 1447 aa15.94■□□□□ 0.14
PTPN1-202ENST00000541713 METTL24Q5JXM2 366 aa15.93■□□□□ 0.14
PTPN1-202ENST00000541713 ATG9AQ7Z3C6 839 aa15.93■□□□□ 0.14
PTPN1-202ENST00000541713 U3KPZ7 1027 aaPredicted RBP15.93■□□□□ 0.14
PTPN1-202ENST00000541713 FAM208AQ9UK61 1670 aaKnown RBP15.93■□□□□ 0.14
PTPN1-202ENST00000541713 FOXO4P98177 505 aa15.93■□□□□ 0.14
PTPN1-202ENST00000541713 GNL2Q13823 731 aaKnown RBP15.93■□□□□ 0.14
PTPN1-202ENST00000541713 NAA30Q147X3 362 aaPredicted RBP15.93■□□□□ 0.14
PTPN1-202ENST00000541713 USP42Q9H9J4 1324 aaKnown RBP15.93■□□□□ 0.14
PTPN1-202ENST00000541713 UBE2Q2LH0YL09 131 aa15.93■□□□□ 0.14
PTPN1-202ENST00000541713 FSIP1Q8NA03 581 aa15.93■□□□□ 0.14
PTPN1-202ENST00000541713 HAUS7Q99871 368 aa15.93■□□□□ 0.14
PTPN1-202ENST00000541713 SCAND2PQ9GZW5 306 aaPredicted RBP15.93■□□□□ 0.14
PTPN1-202ENST00000541713 NALCNQ8IZF0 1738 aa15.92■□□□□ 0.14
PTPN1-202ENST00000541713 ZRSR1Q15695 479 aaKnown RBP15.92■□□□□ 0.14
PTPN1-202ENST00000541713 SLC4A8Q2Y0W8 1093 aa15.92■□□□□ 0.14
PTPN1-202ENST00000541713 LDHAL6AQ6ZMR3 332 aa15.92■□□□□ 0.14
PTPN1-202ENST00000541713 SLIT1O75093 1534 aa15.92■□□□□ 0.14
PTPN1-202ENST00000541713 KLF18A0A0U1RQI7 1052 aa15.92■□□□□ 0.14
PTPN1-202ENST00000541713 GOLGA8BA8MQT2 603 aa15.92■□□□□ 0.14
PTPN1-202ENST00000541713 C11orf57Q6ZUT1 292 aaPredicted RBP15.92■□□□□ 0.14
PTPN1-202ENST00000541713 CMTR1Q8N1G2 835 aaKnown RBP15.92■□□□□ 0.14
PTPN1-202ENST00000541713 FAM200AQ8TCP9 573 aa15.92■□□□□ 0.14
PTPN1-202ENST00000541713 XAGE2Q96GT9 111 aa15.92■□□□□ 0.14
PTPN1-202ENST00000541713 ZMYND15Q9H091 742 aa15.92■□□□□ 0.14
PTPN1-202ENST00000541713 PUS7LQ9H0K6 701 aaKnown RBP15.92■□□□□ 0.14
PTPN1-202ENST00000541713 LTN1O94822 1766 aa15.92■□□□□ 0.14
PTPN1-202ENST00000541713 NPHP4O75161 1426 aaPredicted RBP15.92■□□□□ 0.14
PTPN1-202ENST00000541713 LETM1O95202 739 aaPredicted RBP15.92■□□□□ 0.14
PTPN1-202ENST00000541713 DHX32Q7L7V1 743 aaKnown RBP15.92■□□□□ 0.14
PTPN1-202ENST00000541713 ZKSCAN3Q9BRR0 538 aa15.92■□□□□ 0.14
PTPN1-202ENST00000541713 MAST3O60307 1309 aa15.92■□□□□ 0.14
Retrieved 100 of 20,778 RNA–protein pairs in 34.2 ms