RNA–Protein interactions for RNA: ENST00000541410.1

CLIP1-216, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 1 (best)

Gene CLIP1, Length 2,379 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-216ENST00000541410 SEC31BQ9NQW1 1179 aa17.46■□□□□ 0.39
CLIP1-216ENST00000541410 TAF5LO75529 589 aa17.45■□□□□ 0.38
CLIP1-216ENST00000541410 MCM2P49736 904 aa17.45■□□□□ 0.38
CLIP1-216ENST00000541410 TTC39AQ5SRH9 613 aa17.45■□□□□ 0.38
CLIP1-216ENST00000541410 RIC1Q4ADV7 1423 aa17.45■□□□□ 0.38
CLIP1-216ENST00000541410 RUFY3Q7L099 469 aa17.45■□□□□ 0.38
CLIP1-216ENST00000541410 UTP14AQ9BVJ6 771 aaKnown RBP17.45■□□□□ 0.38
CLIP1-216ENST00000541410 ZDHHC9Q9Y397 364 aa17.45■□□□□ 0.38
CLIP1-216ENST00000541410 SH3TC1Q8TE82 1336 aa17.45■□□□□ 0.38
CLIP1-216ENST00000541410 TRAK2O60296 914 aa17.44■□□□□ 0.38
CLIP1-216ENST00000541410 LARGE1O95461 756 aa17.44■□□□□ 0.38
CLIP1-216ENST00000541410 ZKSCAN1P17029 563 aaPredicted RBP17.44■□□□□ 0.38
CLIP1-216ENST00000541410 ATP2B3Q16720 1220 aa17.44■□□□□ 0.38
CLIP1-216ENST00000541410 CCDC158Q5M9N0 1113 aa17.44■□□□□ 0.38
CLIP1-216ENST00000541410 GBP4Q96PP9 640 aa17.44■□□□□ 0.38
CLIP1-216ENST00000541410 VPS53Q5VIR6 699 aa17.44■□□□□ 0.38
CLIP1-216ENST00000541410 AKAP2Q9Y2D5 859 aa17.44■□□□□ 0.38
CLIP1-216ENST00000541410 MCMDC2Q4G0Z9 681 aa17.43■□□□□ 0.38
CLIP1-216ENST00000541410 CERKQ8TCT0 537 aa17.43■□□□□ 0.38
CLIP1-216ENST00000541410 CWC22Q9HCG8 908 aaKnown RBP17.43■□□□□ 0.38
CLIP1-216ENST00000541410 PDRG1Q9NUG6 133 aa17.43■□□□□ 0.38
CLIP1-216ENST00000541410 CUL4AQ13619 759 aa17.43■□□□□ 0.38
CLIP1-216ENST00000541410 BAG4O95429 457 aaKnown RBP17.42■□□□□ 0.38
CLIP1-216ENST00000541410 ZAP70P43403 619 aa17.42■□□□□ 0.38
CLIP1-216ENST00000541410 CYP46A1Q9Y6A2 500 aa17.42■□□□□ 0.38
CLIP1-216ENST00000541410 COL5A3P25940 1745 aaPredicted RBP17.42■□□□□ 0.38
CLIP1-216ENST00000541410 DDX11L8A8MPP1 907 aa17.42■□□□□ 0.38
CLIP1-216ENST00000541410 CYP2E1P05181 493 aaPredicted RBP17.42■□□□□ 0.38
CLIP1-216ENST00000541410 NUCB2P80303 420 aa17.42■□□□□ 0.38
CLIP1-216ENST00000541410 FOXD4L6Q3SYB3 417 aaPredicted RBP17.42■□□□□ 0.38
CLIP1-216ENST00000541410 FOXD4L3Q6VB84 417 aaPredicted RBP17.42■□□□□ 0.38
CLIP1-216ENST00000541410 AFF2P51816 1311 aa17.41■□□□□ 0.38
CLIP1-216ENST00000541410 SPATA31A6Q5VVP1 1343 aa17.41■□□□□ 0.38
CLIP1-216ENST00000541410 SPEF2Q9C093 1822 aa17.41■□□□□ 0.38
CLIP1-216ENST00000541410 BTAF1O14981 1849 aa17.41■□□□□ 0.38
CLIP1-216ENST00000541410 A0A0G2JLW4 131 aa17.41■□□□□ 0.38
CLIP1-216ENST00000541410 MCTP1Q6DN14 999 aa17.41■□□□□ 0.38
CLIP1-216ENST00000541410 ZSWIM6Q9HCJ5 1215 aa17.41■□□□□ 0.38
CLIP1-216ENST00000541410 FBXO3Q9UK99 471 aa17.41■□□□□ 0.38
CLIP1-216ENST00000541410 TAF1P21675 1872 aa17.41■□□□□ 0.38
CLIP1-216ENST00000541410 NTSR2O95665 410 aa17.4■□□□□ 0.38
CLIP1-216ENST00000541410 AMIGO3Q86WK7 504 aa17.4■□□□□ 0.38
CLIP1-216ENST00000541410 KCNB2Q92953 911 aa17.4■□□□□ 0.38
CLIP1-216ENST00000541410 GJD4Q96KN9 370 aaPredicted RBP17.4■□□□□ 0.38
CLIP1-216ENST00000541410 SRP68Q9UHB9 627 aaKnown RBP17.4■□□□□ 0.38
CLIP1-216ENST00000541410 MYO5AQ9Y4I1 1855 aaKnown RBP17.4■□□□□ 0.38
CLIP1-216ENST00000541410 CCDC24Q8N4L8 307 aa17.4■□□□□ 0.38
CLIP1-216ENST00000541410 VGLL2Q8N8G2 317 aa17.4■□□□□ 0.38
CLIP1-216ENST00000541410 LIMCH1Q9UPQ0 1083 aa17.4■□□□□ 0.38
CLIP1-216ENST00000541410 RREB1Q92766 1687 aa17.4■□□□□ 0.38
CLIP1-216ENST00000541410 PDE8BO95263 885 aa17.39■□□□□ 0.38
CLIP1-216ENST00000541410 MCAMP43121 646 aa17.39■□□□□ 0.38
CLIP1-216ENST00000541410 M0R2C6 588 aa17.39■□□□□ 0.37
CLIP1-216ENST00000541410 RNF20Q5VTR2 975 aa17.39■□□□□ 0.37
CLIP1-216ENST00000541410 C3orf67Q6ZVT6 689 aa17.39■□□□□ 0.37
CLIP1-216ENST00000541410 CCDC83Q8IWF9 413 aa17.39■□□□□ 0.37
CLIP1-216ENST00000541410 NECAB1Q8N987 351 aa17.39■□□□□ 0.37
CLIP1-216ENST00000541410 DDX60Q8IY21 1712 aaKnown RBP17.39■□□□□ 0.37
CLIP1-216ENST00000541410 MAST3O60307 1309 aa17.38■□□□□ 0.37
CLIP1-216ENST00000541410 GNPATO15228 680 aa17.38■□□□□ 0.37
CLIP1-216ENST00000541410 PHKA1P46020 1223 aa17.38■□□□□ 0.37
CLIP1-216ENST00000541410 WASHC4Q2M389 1173 aa17.38■□□□□ 0.37
CLIP1-216ENST00000541410 ERFEQ4G0M1 354 aa17.38■□□□□ 0.37
CLIP1-216ENST00000541410 MPHOSPH8Q99549 860 aa17.38■□□□□ 0.37
CLIP1-216ENST00000541410 COL4A1P02462 1669 aa17.38■□□□□ 0.37
CLIP1-216ENST00000541410 RNF113AO15541 343 aaKnown RBP17.38■□□□□ 0.37
CLIP1-216ENST00000541410 CYP21A2P08686 494 aa17.38■□□□□ 0.37
CLIP1-216ENST00000541410 PARP10Q53GL7 1025 aa17.38■□□□□ 0.37
CLIP1-216ENST00000541410 ZMYM1Q5SVZ6 1142 aa17.38■□□□□ 0.37
CLIP1-216ENST00000541410 USPL1Q5W0Q7 1092 aa17.38■□□□□ 0.37
CLIP1-216ENST00000541410 OSBP2Q969R2 916 aa17.38■□□□□ 0.37
CLIP1-216ENST00000541410 CCNL1Q9UK58 526 aaPredicted RBP17.38■□□□□ 0.37
CLIP1-216ENST00000541410 AKAP11Q9UKA4 1901 aa17.37■□□□□ 0.37
CLIP1-216ENST00000541410 TBC1D9BQ66K14 1250 aa17.37■□□□□ 0.37
CLIP1-216ENST00000541410 BLOC1S2Q6QNY1 142 aa17.37■□□□□ 0.37
CLIP1-216ENST00000541410 AEBP2Q6ZN18 517 aaPredicted RBP17.37■□□□□ 0.37
CLIP1-216ENST00000541410 RPAP1Q9BWH6 1393 aaPredicted RBP17.37■□□□□ 0.37
CLIP1-216ENST00000541410 ME3Q16798 604 aa17.37■□□□□ 0.37
CLIP1-216ENST00000541410 INTS4Q96HW7 963 aaKnown RBP17.37■□□□□ 0.37
CLIP1-216ENST00000541410 TM6SF1Q9BZW5 370 aa17.37■□□□□ 0.37
CLIP1-216ENST00000541410 TPCN1Q9ULQ1 816 aa17.37■□□□□ 0.37
CLIP1-216ENST00000541410 ZNF652Q9Y2D9 606 aa17.37■□□□□ 0.37
CLIP1-216ENST00000541410 PHF14O94880 888 aa17.36■□□□□ 0.37
CLIP1-216ENST00000541410 LRRC2Q9BYS8 371 aa17.36■□□□□ 0.37
CLIP1-216ENST00000541410 RFX7Q2KHR2 1363 aa17.36■□□□□ 0.37
CLIP1-216ENST00000541410 WTIPA6NIX2 430 aaPredicted RBP17.36■□□□□ 0.37
CLIP1-216ENST00000541410 CCDC102BQ68D86 513 aa17.36■□□□□ 0.37
CLIP1-216ENST00000541410 TTLL5Q6EMB2 1281 aa17.36■□□□□ 0.37
CLIP1-216ENST00000541410 BCL2L12Q9HB09 334 aa17.36■□□□□ 0.37
CLIP1-216ENST00000541410 HELLSQ9NRZ9 838 aa17.36■□□□□ 0.37
CLIP1-216ENST00000541410 THSD7AQ9UPZ6 1657 aa17.35■□□□□ 0.37
CLIP1-216ENST00000541410 HSPD1P10809 573 aaKnown RBP17.35■□□□□ 0.37
CLIP1-216ENST00000541410 PSMA5P28066 241 aa17.35■□□□□ 0.37
CLIP1-216ENST00000541410 GTF2E1P29083 439 aaPredicted RBP17.35■□□□□ 0.37
CLIP1-216ENST00000541410 ST3GAL1Q11201 340 aa17.35■□□□□ 0.37
CLIP1-216ENST00000541410 STK3Q13188 491 aa17.35■□□□□ 0.37
CLIP1-216ENST00000541410 CCDC152Q4G0S7 254 aa17.35■□□□□ 0.37
CLIP1-216ENST00000541410 SEPT12Q8IYM1 358 aa17.35■□□□□ 0.37
CLIP1-216ENST00000541410 TCHHQ07283 1943 aa17.35■□□□□ 0.37
CLIP1-216ENST00000541410 STOX1Q6ZVD7 989 aa17.35■□□□□ 0.37
Retrieved 100 of 20,778 RNA–protein pairs in 14 ms