RNA–Protein interactions for RNA: ENST00000541341.5

CHFR-219, Transcript of checkpoint with forkhead and ring finger domains, humanhuman

TSL 3

Gene CHFR, Length 581 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHFR-219ENST00000541341 SNRPA1P09661 255 aaKnown RBP12.56□□□□□ -0.4
CHFR-219ENST00000541341 EIF4A1P60842 406 aaKnown RBP12.56□□□□□ -0.4
CHFR-219ENST00000541341 CHADLQ6NUI6 762 aa12.56□□□□□ -0.4
CHFR-219ENST00000541341 PDLIM2Q96JY6 352 aa12.56□□□□□ -0.4
CHFR-219ENST00000541341 CLEC11AQ9Y240 323 aa12.56□□□□□ -0.4
CHFR-219ENST00000541341 TBC1D9Q6ZT07 1266 aa12.55□□□□□ -0.4
CHFR-219ENST00000541341 NUTM1Q86Y26 1132 aa12.55□□□□□ -0.4
CHFR-219ENST00000541341 LNPKQ9C0E8 428 aa12.55□□□□□ -0.4
CHFR-219ENST00000541341 ZMYND15Q9H091 742 aa12.55□□□□□ -0.4
CHFR-219ENST00000541341 ABCC4O15439 1325 aa12.55□□□□□ -0.4
CHFR-219ENST00000541341 TRPM7Q96QT4 1865 aa12.55□□□□□ -0.4
CHFR-219ENST00000541341 LTBP1Q14766 1721 aa12.54□□□□□ -0.4
CHFR-219ENST00000541341 ANKRD36CQ5JPF3 1778 aa12.54□□□□□ -0.4
CHFR-219ENST00000541341 ADAMTSL1Q8N6G6 1762 aa12.54□□□□□ -0.4
CHFR-219ENST00000541341 HOXB7P09629 217 aa12.54□□□□□ -0.4
CHFR-219ENST00000541341 GTF2E1P29083 439 aaPredicted RBP12.54□□□□□ -0.4
CHFR-219ENST00000541341 ANAPC15P60006 121 aa12.54□□□□□ -0.4
CHFR-219ENST00000541341 CCDC93Q567U6 631 aa12.54□□□□□ -0.4
CHFR-219ENST00000541341 SASS6Q6UVJ0 657 aa12.54□□□□□ -0.4
CHFR-219ENST00000541341 LRSAM1Q6UWE0 723 aa12.54□□□□□ -0.4
CHFR-219ENST00000541341 TSR2Q969E8 191 aaKnown RBP12.54□□□□□ -0.4
CHFR-219ENST00000541341 INTS4Q96HW7 963 aaKnown RBP12.54□□□□□ -0.4
CHFR-219ENST00000541341 PRIMPOLQ96LW4 560 aa12.54□□□□□ -0.4
CHFR-219ENST00000541341 ZNF652Q9Y2D9 606 aa12.54□□□□□ -0.4
CHFR-219ENST00000541341 ZKSCAN5Q9Y2L8 839 aa12.54□□□□□ -0.4
CHFR-219ENST00000541341 LTBP3Q9NS15 1303 aa12.54□□□□□ -0.4
CHFR-219ENST00000541341 COL4A5P29400 1685 aa12.54□□□□□ -0.4
CHFR-219ENST00000541341 MYL6BP14649 208 aa12.53□□□□□ -0.4
CHFR-219ENST00000541341 NPR1P16066 1061 aa12.53□□□□□ -0.4
CHFR-219ENST00000541341 GPTP24298 496 aa12.53□□□□□ -0.4
CHFR-219ENST00000541341 KIAA2012Q0VF49 1180 aa12.53□□□□□ -0.4
CHFR-219ENST00000541341 TPTE2Q6XPS3 522 aa12.53□□□□□ -0.4
CHFR-219ENST00000541341 DCTPP1Q9H773 170 aa12.53□□□□□ -0.4
CHFR-219ENST00000541341 ABCC12Q96J65 1359 aa12.53□□□□□ -0.4
CHFR-219ENST00000541341 CYP2E1P05181 493 aaPredicted RBP12.52□□□□□ -0.41
CHFR-219ENST00000541341 FKBP4Q02790 459 aaKnown RBP eCLIP12.52□□□□□ -0.41
CHFR-219ENST00000541341 TTLL7Q6ZT98 887 aa12.52□□□□□ -0.41
CHFR-219ENST00000541341 SMAP1Q8IYB5 467 aaPredicted RBP12.52□□□□□ -0.41
CHFR-219ENST00000541341 C7orf43Q8WVR3 580 aa12.52□□□□□ -0.41
CHFR-219ENST00000541341 ZBTB3Q9H5J0 574 aa12.52□□□□□ -0.41
CHFR-219ENST00000541341 TAF1DQ9H5J8 278 aaPredicted RBP12.52□□□□□ -0.41
CHFR-219ENST00000541341 GJA3Q9Y6H8 435 aa12.52□□□□□ -0.41
CHFR-219ENST00000541341 ZSCAN23Q3MJ62 389 aa12.51□□□□□ -0.41
CHFR-219ENST00000541341 TTC22Q5TAA0 569 aa12.51□□□□□ -0.41
CHFR-219ENST00000541341 SOGA3Q5TF21 947 aa12.51□□□□□ -0.41
CHFR-219ENST00000541341 MAP1SQ66K74 1059 aaPredicted RBP12.51□□□□□ -0.41
CHFR-219ENST00000541341 CLEC4GQ6UXB4 293 aa12.51□□□□□ -0.41
CHFR-219ENST00000541341 SYNE4Q8N205 404 aa12.51□□□□□ -0.41
CHFR-219ENST00000541341 MRPL50Q8N5N7 158 aaKnown RBP12.51□□□□□ -0.41
CHFR-219ENST00000541341 KIF2CQ99661 725 aa12.51□□□□□ -0.41
CHFR-219ENST00000541341 CHMP4AQ9BY43 222 aa12.51□□□□□ -0.41
CHFR-219ENST00000541341 CREBZFQ9NS37 354 aa12.51□□□□□ -0.41
CHFR-219ENST00000541341 ATP6V1DQ9Y5K8 247 aa12.51□□□□□ -0.41
CHFR-219ENST00000541341 PTPRCP08575 1304 aa12.51□□□□□ -0.41
CHFR-219ENST00000541341 FOXN1O15353 648 aa12.5□□□□□ -0.41
CHFR-219ENST00000541341 IARSP41252 1262 aaKnown RBP12.5□□□□□ -0.41
CHFR-219ENST00000541341 FMR1Q06787 632 aaKnown RBP eCLIP12.5□□□□□ -0.412e-9■□□□□ 10.5
CHFR-219ENST00000541341 LDHDQ86WU2 507 aa12.5□□□□□ -0.41
CHFR-219ENST00000541341 GAS2L3Q86XJ1 694 aa12.5□□□□□ -0.41
CHFR-219ENST00000541341 C8orf58Q8NAV2 365 aa12.5□□□□□ -0.41
CHFR-219ENST00000541341 LMBRD1Q9NUN5 540 aa12.5□□□□□ -0.41
CHFR-219ENST00000541341 IQCA1LA6NCM1 817 aa12.49□□□□□ -0.41
CHFR-219ENST00000541341 ERC2O15083 957 aa12.49□□□□□ -0.41
CHFR-219ENST00000541341 VAMP4O75379 141 aa12.49□□□□□ -0.41
CHFR-219ENST00000541341 EPHX2P34913 555 aa12.49□□□□□ -0.41
CHFR-219ENST00000541341 VEGFBP49765 207 aa12.49□□□□□ -0.41
CHFR-219ENST00000541341 MCTP1Q6DN14 999 aa12.49□□□□□ -0.41
CHFR-219ENST00000541341 USP26Q9BXU7 913 aa12.49□□□□□ -0.41
CHFR-219ENST00000541341 SRCIN1Q9C0H9 1055 aa12.49□□□□□ -0.41
CHFR-219ENST00000541341 HACL1Q9UJ83 578 aa12.49□□□□□ -0.41
CHFR-219ENST00000541341 CNTNAP1P78357 1384 aa12.48□□□□□ -0.41
CHFR-219ENST00000541341 ERBB4Q15303 1308 aa12.48□□□□□ -0.41
CHFR-219ENST00000541341 UBN2Q6ZU65 1347 aa12.48□□□□□ -0.41
CHFR-219ENST00000541341 PASKQ96RG2 1323 aa12.48□□□□□ -0.41
CHFR-219ENST00000541341 ANXA1P04083 346 aa12.48□□□□□ -0.41
CHFR-219ENST00000541341 GRM1Q13255 1194 aa12.48□□□□□ -0.41
CHFR-219ENST00000541341 KRT24Q2M2I5 525 aa12.48□□□□□ -0.41
CHFR-219ENST00000541341 TWISTNBQ3B726 338 aaPredicted RBP12.48□□□□□ -0.41
CHFR-219ENST00000541341 KIF6Q6ZMV9 814 aa12.48□□□□□ -0.41
CHFR-219ENST00000541341 C3orf67Q6ZVT6 689 aa12.48□□□□□ -0.41
CHFR-219ENST00000541341 TSPYL6Q8N831 410 aa12.48□□□□□ -0.41
CHFR-219ENST00000541341 ANKRD44Q8N8A2 993 aa12.48□□□□□ -0.41
CHFR-219ENST00000541341 NECTIN2Q92692 538 aa12.48□□□□□ -0.41
CHFR-219ENST00000541341 RPGRQ92834 1020 aaKnown RBP12.48□□□□□ -0.41
CHFR-219ENST00000541341 OSBPL3Q9H4L5 887 aa12.48□□□□□ -0.41
CHFR-219ENST00000541341 TNNQ9UQP3 1299 aa12.48□□□□□ -0.41
CHFR-219ENST00000541341 POLR2AP24928 1970 aaKnown RBP12.48□□□□□ -0.41
CHFR-219ENST00000541341 MAP3K15Q6ZN16 1313 aa12.47□□□□□ -0.41
CHFR-219ENST00000541341 KLRG2A4D1S0 409 aaPredicted RBP12.47□□□□□ -0.41
CHFR-219ENST00000541341 TMEM88BA6NKF7 163 aa12.47□□□□□ -0.41
CHFR-219ENST00000541341 GOLGA6L6A8MZA4 724 aa12.47□□□□□ -0.41
CHFR-219ENST00000541341 ITGBL1O95965 494 aaPredicted RBP12.47□□□□□ -0.41
CHFR-219ENST00000541341 PTMAP06454 111 aaKnown RBP12.47□□□□□ -0.41
CHFR-219ENST00000541341 ALDH1B1P30837 517 aa12.47□□□□□ -0.41
CHFR-219ENST00000541341 CHAF1AQ13111 956 aaPredicted RBP12.47□□□□□ -0.41
CHFR-219ENST00000541341 SUSD4Q5VX71 490 aa12.47□□□□□ -0.41
CHFR-219ENST00000541341 CAVIN1Q6NZI2 390 aaKnown RBP12.47□□□□□ -0.41
CHFR-219ENST00000541341 PLEKHM2Q8IWE5 1019 aa12.47□□□□□ -0.41
CHFR-219ENST00000541341 RTKN2Q8IZC4 609 aa12.47□□□□□ -0.41
CHFR-219ENST00000541341 L3MBTL3Q96JM7 780 aaPredicted RBP12.47□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 13.6 ms