RNA–Protein interactions for RNA: ENST00000540798.5

RTN3-210, Transcript of reticulon 3, humanhuman

TSL 1 (best) BASIC

Gene RTN3, Length 3,124 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-210ENST00000540798 AKAP11Q9UKA4 1901 aa16.48■□□□□ 0.23
RTN3-210ENST00000540798 PRPF40AO75400 957 aaKnown RBP16.48■□□□□ 0.23
RTN3-210ENST00000540798 BARGINQ6ZT62 677 aa16.48■□□□□ 0.23
RTN3-210ENST00000540798 AKAP2Q9Y2D5 859 aa16.48■□□□□ 0.23
RTN3-210ENST00000540798 ZNF445P59923 1031 aa16.48■□□□□ 0.23
RTN3-210ENST00000540798 ZMYM1Q5SVZ6 1142 aa16.48■□□□□ 0.23
RTN3-210ENST00000540798 ZNF34Q8IZ26 560 aa16.48■□□□□ 0.23
RTN3-210ENST00000540798 TTLL11Q8NHH1 800 aa16.48■□□□□ 0.23
RTN3-210ENST00000540798 KRT32Q14532 448 aa16.48■□□□□ 0.23
RTN3-210ENST00000540798 DDB1Q16531 1140 aa16.48■□□□□ 0.23
RTN3-210ENST00000540798 ME3Q16798 604 aa16.48■□□□□ 0.23
RTN3-210ENST00000540798 CHAMP1Q96JM3 812 aa16.48■□□□□ 0.23
RTN3-210ENST00000540798 SEC62Q99442 399 aaKnown RBP16.48■□□□□ 0.23
RTN3-210ENST00000540798 DDX60Q8IY21 1712 aaKnown RBP16.47■□□□□ 0.23
RTN3-210ENST00000540798 BCORQ6W2J9 1755 aa16.47■□□□□ 0.23
RTN3-210ENST00000540798 GOLIM4O00461 696 aa16.47■□□□□ 0.23
RTN3-210ENST00000540798 CTSWP56202 376 aa16.47■□□□□ 0.23
RTN3-210ENST00000540798 IFIT5Q13325 482 aaKnown RBP16.47■□□□□ 0.23
RTN3-210ENST00000540798 LARP6Q9BRS8 491 aaKnown RBP16.47■□□□□ 0.23
RTN3-210ENST00000540798 TPCN1Q9ULQ1 816 aa16.47■□□□□ 0.23
RTN3-210ENST00000540798 RIPOR2Q9Y4F9 1068 aa16.47■□□□□ 0.23
RTN3-210ENST00000540798 KAT6BQ8WYB5 2073 aa16.47■□□□□ 0.23
RTN3-210ENST00000540798 MYH14Q7Z406 1995 aaKnown RBP16.47■□□□□ 0.23
RTN3-210ENST00000540798 TCHHQ07283 1943 aa16.47■□□□□ 0.23
RTN3-210ENST00000540798 EIF5P55010 431 aaKnown RBP16.47■□□□□ 0.23
RTN3-210ENST00000540798 ANKRD1Q15327 319 aa16.47■□□□□ 0.23
RTN3-210ENST00000540798 INTS5Q6P9B9 1019 aaKnown RBP16.47■□□□□ 0.23
RTN3-210ENST00000540798 BLOC1S2Q6QNY1 142 aa16.47■□□□□ 0.23
RTN3-210ENST00000540798 SYNE4Q8N205 404 aa16.47■□□□□ 0.23
RTN3-210ENST00000540798 MARCH10Q8NA82 808 aaPredicted RBP16.47■□□□□ 0.23
RTN3-210ENST00000540798 IFIT1P09914 478 aaKnown RBP16.46■□□□□ 0.23
RTN3-210ENST00000540798 TOB2Q14106 344 aaPredicted RBP16.46■□□□□ 0.23
RTN3-210ENST00000540798 CCDC129Q6ZRS4 1044 aa16.46■□□□□ 0.23
RTN3-210ENST00000540798 UBN2Q6ZU65 1347 aa16.46■□□□□ 0.23
RTN3-210ENST00000540798 ADAMTS2O95450 1211 aa16.46■□□□□ 0.23
RTN3-210ENST00000540798 ZSCAN22P10073 491 aaPredicted RBP16.46■□□□□ 0.23
RTN3-210ENST00000540798 DZIP3Q86Y13 1208 aaKnown RBP16.46■□□□□ 0.23
RTN3-210ENST00000540798 TMEM87AQ8NBN3 555 aa16.46■□□□□ 0.23
RTN3-210ENST00000540798 SYTL4Q96C24 671 aaPredicted RBP16.46■□□□□ 0.23
RTN3-210ENST00000540798 DSCC1Q9BVC3 393 aa16.46■□□□□ 0.23
RTN3-210ENST00000540798 SMC3Q9UQE7 1217 aa16.46■□□□□ 0.23
RTN3-210ENST00000540798 SYT1P21579 422 aa16.45■□□□□ 0.22
RTN3-210ENST00000540798 GPTP24298 496 aa16.45■□□□□ 0.22
RTN3-210ENST00000540798 FOXD4L5Q5VV16 416 aaPredicted RBP16.45■□□□□ 0.22
RTN3-210ENST00000540798 CCDC83Q8IWF9 413 aa16.45■□□□□ 0.22
RTN3-210ENST00000540798 FOXD4L4Q8WXT5 416 aaPredicted RBP16.45■□□□□ 0.22
RTN3-210ENST00000540798 XAGE2Q96GT9 111 aa16.45■□□□□ 0.22
RTN3-210ENST00000540798 AK7Q96M32 723 aa16.45■□□□□ 0.22
RTN3-210ENST00000540798 STX6O43752 255 aa16.45■□□□□ 0.22
RTN3-210ENST00000540798 VGLL2Q8N8G2 317 aa16.45■□□□□ 0.22
RTN3-210ENST00000540798 GREM2Q9H772 168 aa16.45■□□□□ 0.22
RTN3-210ENST00000540798 IRS4O14654 1257 aaPredicted RBP16.44■□□□□ 0.22
RTN3-210ENST00000540798 RNF113AO15541 343 aaKnown RBP16.44■□□□□ 0.22
RTN3-210ENST00000540798 CYP21A2P08686 494 aa16.44■□□□□ 0.22
RTN3-210ENST00000540798 ITGA6P23229 1130 aa16.44■□□□□ 0.22
RTN3-210ENST00000540798 ADORA1P30542 326 aa16.44■□□□□ 0.22
RTN3-210ENST00000540798 PANK2Q9BZ23 570 aa16.44■□□□□ 0.22
RTN3-210ENST00000540798 PDE8AO60658 829 aa16.44■□□□□ 0.22
RTN3-210ENST00000540798 GJB2P29033 226 aa16.44■□□□□ 0.22
RTN3-210ENST00000540798 ZSCAN23Q3MJ62 389 aa16.44■□□□□ 0.22
RTN3-210ENST00000540798 ZNF512BQ96KM6 892 aaPredicted RBP16.44■□□□□ 0.22
RTN3-210ENST00000540798 MBD3O95983 291 aa16.43■□□□□ 0.22
RTN3-210ENST00000540798 GLIPR1L2Q4G1C9 344 aa16.43■□□□□ 0.22
RTN3-210ENST00000540798 CCDC158Q5M9N0 1113 aa16.43■□□□□ 0.22
RTN3-210ENST00000540798 CCDC87Q9NVE4 849 aa16.43■□□□□ 0.22
RTN3-210ENST00000540798 MAST3O60307 1309 aa16.43■□□□□ 0.22
RTN3-210ENST00000540798 CAVIN1Q6NZI2 390 aaKnown RBP16.43■□□□□ 0.22
RTN3-210ENST00000540798 CCDC9Q9Y3X0 531 aaKnown RBP16.43■□□□□ 0.22
RTN3-210ENST00000540798 UBAP1LF5GYI3 381 aa16.43■□□□□ 0.22
RTN3-210ENST00000540798 NEK1Q96PY6 1258 aa16.43■□□□□ 0.22
RTN3-210ENST00000540798 TRMT112Q9UI30 125 aaKnown RBP16.43■□□□□ 0.22
RTN3-210ENST00000540798 ANKRD18BA2A2Z9 1011 aa16.42■□□□□ 0.22
RTN3-210ENST00000540798 PDIA4P13667 645 aaKnown RBP16.42■□□□□ 0.22
RTN3-210ENST00000540798 NSFL1CQ9UNZ2 370 aaKnown RBP16.42■□□□□ 0.22
RTN3-210ENST00000540798 TBC1D2BQ9UPU7 963 aa16.42■□□□□ 0.22
RTN3-210ENST00000540798 F13A1P00488 732 aa16.42■□□□□ 0.22
RTN3-210ENST00000540798 TAF7LQ5H9L4 462 aa16.42■□□□□ 0.22
RTN3-210ENST00000540798 TTC39AQ5SRH9 613 aa16.42■□□□□ 0.22
RTN3-210ENST00000540798 CCDC85AQ96PX6 553 aaPredicted RBP16.42■□□□□ 0.22
RTN3-210ENST00000540798 MTMR6Q9Y217 621 aa16.42■□□□□ 0.22
RTN3-210ENST00000540798 CRKLP46109 303 aaKnown RBP16.41■□□□□ 0.22
RTN3-210ENST00000540798 SLFNL1Q499Z3 407 aa16.41■□□□□ 0.22
RTN3-210ENST00000540798 LOC102724428A0A0B4J2F2 783 aa16.41■□□□□ 0.22
RTN3-210ENST00000540798 SIK1P57059 783 aa16.41■□□□□ 0.22
RTN3-210ENST00000540798 STOX1Q6ZVD7 989 aa16.41■□□□□ 0.22
RTN3-210ENST00000540798 ARXQ96QS3 562 aa16.41■□□□□ 0.22
RTN3-210ENST00000540798 ITPK1Q13572 414 aa16.41■□□□□ 0.22
RTN3-210ENST00000540798 ATP2B3Q16720 1220 aa16.41■□□□□ 0.22
RTN3-210ENST00000540798 NECAB1Q8N987 351 aa16.41■□□□□ 0.22
RTN3-210ENST00000540798 TMEM63CQ9P1W3 806 aa16.41■□□□□ 0.22
RTN3-210ENST00000540798 CASZ1Q86V15 1759 aa16.4■□□□□ 0.22
RTN3-210ENST00000540798 CAMTA2O94983 1202 aa16.4■□□□□ 0.22
RTN3-210ENST00000540798 ZFYP08048 801 aaPredicted RBP16.4■□□□□ 0.22
RTN3-210ENST00000540798 HSPD1P10809 573 aaKnown RBP16.4■□□□□ 0.22
RTN3-210ENST00000540798 SCARF1Q14162 830 aa16.4■□□□□ 0.22
RTN3-210ENST00000540798 LDHAL6AQ6ZMR3 332 aa16.4■□□□□ 0.22
RTN3-210ENST00000540798 DOCK2Q92608 1830 aa16.4■□□□□ 0.22
RTN3-210ENST00000540798 M0R2C6 588 aa16.4■□□□□ 0.22
RTN3-210ENST00000540798 ATP6V1AP38606 617 aa16.4■□□□□ 0.22
RTN3-210ENST00000540798 ATRNO75882 1429 aa16.39■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 57.5 ms