RNA–Protein interactions for RNA: ENST00000540669.1

VPS33A-204, Transcript of VPS33A, CORVET/HOPS core subunit, humanhuman

TSL 3

Gene VPS33A, Length 455 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33A-204ENST00000540669 GTF2E1P29083 439 aaPredicted RBP13.11□□□□□ -0.31
VPS33A-204ENST00000540669 TGFB2P61812 414 aa13.11□□□□□ -0.31
VPS33A-204ENST00000540669 C7orf43Q8WVR3 580 aa13.11□□□□□ -0.31
VPS33A-204ENST00000540669 CDC5LQ99459 802 aaKnown RBP13.11□□□□□ -0.31
VPS33A-204ENST00000540669 RWDD1Q9H446 243 aaPredicted RBP13.11□□□□□ -0.31
VPS33A-204ENST00000540669 BSDC1Q9NW68 430 aaPredicted RBP13.11□□□□□ -0.31
VPS33A-204ENST00000540669 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP13.11□□□□□ -0.31
VPS33A-204ENST00000540669 CCDC57Q2TAC2 916 aa13.1□□□□□ -0.31
VPS33A-204ENST00000540669 SLC51AQ86UW1 340 aa13.1□□□□□ -0.31
VPS33A-204ENST00000540669 MASTLQ96GX5 879 aa13.1□□□□□ -0.31
VPS33A-204ENST00000540669 ZNF594Q96JF6 807 aaPredicted RBP13.1□□□□□ -0.31
VPS33A-204ENST00000540669 PUS3Q9BZE2 481 aaKnown RBP13.1□□□□□ -0.31
VPS33A-204ENST00000540669 EXOC6BQ9Y2D4 811 aa13.1□□□□□ -0.31
VPS33A-204ENST00000540669 PSME4Q14997 1843 aa13.09□□□□□ -0.31
VPS33A-204ENST00000540669 RAB11FIP3O75154 756 aa13.09□□□□□ -0.31
VPS33A-204ENST00000540669 CHRNA5P30532 468 aa13.09□□□□□ -0.31
VPS33A-204ENST00000540669 IL15P40933 162 aaPredicted RBP13.09□□□□□ -0.31
VPS33A-204ENST00000540669 NUCB1Q02818 461 aa13.09□□□□□ -0.31
VPS33A-204ENST00000540669 LRRC24Q50LG9 513 aa13.09□□□□□ -0.31
VPS33A-204ENST00000540669 B4GALNT3Q6L9W6 998 aa13.09□□□□□ -0.31
VPS33A-204ENST00000540669 TMC4Q7Z404 712 aa13.09□□□□□ -0.31
VPS33A-204ENST00000540669 CCDC85AQ96PX6 553 aaPredicted RBP13.09□□□□□ -0.31
VPS33A-204ENST00000540669 SYT17Q9BSW7 474 aa13.09□□□□□ -0.31
VPS33A-204ENST00000540669 GPR108Q9NPR9 543 aa13.09□□□□□ -0.31
VPS33A-204ENST00000540669 AKAP11Q9UKA4 1901 aa13.09□□□□□ -0.31
VPS33A-204ENST00000540669 FGFR2P21802 821 aa13.08□□□□□ -0.32
VPS33A-204ENST00000540669 RPS8P62241 208 aaKnown RBP13.08□□□□□ -0.32
VPS33A-204ENST00000540669 HSP90AB4PQ58FF6 505 aa13.08□□□□□ -0.32
VPS33A-204ENST00000540669 DDX46Q7L014 1031 aaKnown RBP13.08□□□□□ -0.32
VPS33A-204ENST00000540669 C2CD5Q86YS7 1000 aa13.08□□□□□ -0.32
VPS33A-204ENST00000540669 PELP1Q8IZL8 1130 aaKnown RBP13.08□□□□□ -0.32
VPS33A-204ENST00000540669 RPGRQ92834 1020 aaKnown RBP13.08□□□□□ -0.32
VPS33A-204ENST00000540669 RBM17Q96I25 401 aaKnown RBP13.08□□□□□ -0.32
VPS33A-204ENST00000540669 CCDC136Q96JN2 1154 aa13.08□□□□□ -0.32
VPS33A-204ENST00000540669 H0YIN7 160 aa13.07□□□□□ -0.32
VPS33A-204ENST00000540669 SURF6O75683 361 aaKnown RBP13.07□□□□□ -0.32
VPS33A-204ENST00000540669 BBOX1O75936 387 aa13.07□□□□□ -0.32
VPS33A-204ENST00000540669 DPEP1P16444 411 aa13.07□□□□□ -0.32
VPS33A-204ENST00000540669 GPR162Q16538 588 aa13.07□□□□□ -0.32
VPS33A-204ENST00000540669 PRPF40BQ6NWY9 871 aaKnown RBP13.07□□□□□ -0.32
VPS33A-204ENST00000540669 ERC1Q8IUD2 1116 aa13.07□□□□□ -0.32
VPS33A-204ENST00000540669 ANKRD18AQ8IVF6 992 aa13.07□□□□□ -0.32
VPS33A-204ENST00000540669 RHPN1Q8TCX5 695 aa13.07□□□□□ -0.32
VPS33A-204ENST00000540669 KIF1BPQ96EK5 621 aa13.07□□□□□ -0.32
VPS33A-204ENST00000540669 PODXL2Q9NZ53 605 aa13.07□□□□□ -0.32
VPS33A-204ENST00000540669 MROH5Q6ZUA9 1318 aa13.07□□□□□ -0.32
VPS33A-204ENST00000540669 DOCK2Q92608 1830 aa13.06□□□□□ -0.32
VPS33A-204ENST00000540669 MYH13Q9UKX3 1938 aa13.06□□□□□ -0.32
VPS33A-204ENST00000540669 ALDH1B1P30837 517 aa13.06□□□□□ -0.32
VPS33A-204ENST00000540669 LDHAL6AQ6ZMR3 332 aa13.06□□□□□ -0.32
VPS33A-204ENST00000540669 MINPP1Q9UNW1 487 aa13.06□□□□□ -0.32
VPS33A-204ENST00000540669 CHMP3Q9Y3E7 222 aa13.06□□□□□ -0.32
VPS33A-204ENST00000540669 ATP6V0A2Q9Y487 856 aa13.06□□□□□ -0.32
VPS33A-204ENST00000540669 PPEF1O14829 653 aaPredicted RBP13.05□□□□□ -0.32
VPS33A-204ENST00000540669 PDE8BO95263 885 aa13.05□□□□□ -0.32
VPS33A-204ENST00000540669 PDE4AP27815 886 aa13.05□□□□□ -0.32
VPS33A-204ENST00000540669 IGHMBP2P38935 993 aaKnown RBP13.05□□□□□ -0.32
VPS33A-204ENST00000540669 CHRNDQ07001 517 aa13.05□□□□□ -0.32
VPS33A-204ENST00000540669 C15orf52Q6ZUT6 534 aaKnown RBP13.05□□□□□ -0.32
VPS33A-204ENST00000540669 SP8Q8IXZ3 490 aa13.05□□□□□ -0.32
VPS33A-204ENST00000540669 NLGN2Q8NFZ4 835 aa13.05□□□□□ -0.32
VPS33A-204ENST00000540669 CNKSR1Q969H4 720 aa13.05□□□□□ -0.32
VPS33A-204ENST00000540669 LRRCC1Q9C099 1032 aa13.05□□□□□ -0.32
VPS33A-204ENST00000540669 SIL1Q9H173 461 aa13.05□□□□□ -0.32
VPS33A-204ENST00000540669 COL4A5P29400 1685 aa13.05□□□□□ -0.32
VPS33A-204ENST00000540669 DICER1Q9UPY3 1922 aaKnown RBP13.04□□□□□ -0.32
VPS33A-204ENST00000540669 TFCP2Q12800 502 aa13.04□□□□□ -0.32
VPS33A-204ENST00000540669 CHD1LQ86WJ1 897 aa13.04□□□□□ -0.32
VPS33A-204ENST00000540669 EAF2Q96CJ1 260 aaPredicted RBP13.04□□□□□ -0.32
VPS33A-204ENST00000540669 RTFDC1Q9BY42 306 aaPredicted RBP13.04□□□□□ -0.32
VPS33A-204ENST00000540669 ZNF804BA4D1E1 1349 aa13.04□□□□□ -0.32
VPS33A-204ENST00000540669 A0A0G2JLW4 131 aa13.03□□□□□ -0.32
VPS33A-204ENST00000540669 GRIN3BO60391 1043 aa13.03□□□□□ -0.32
VPS33A-204ENST00000540669 ABCB7O75027 752 aa13.03□□□□□ -0.32
VPS33A-204ENST00000540669 DSG3P32926 999 aa13.03□□□□□ -0.32
VPS33A-204ENST00000540669 G3BP1Q13283 466 aaKnown RBP eCLIP13.03□□□□□ -0.32
VPS33A-204ENST00000540669 TNNI3KQ59H18 835 aa13.03□□□□□ -0.32
VPS33A-204ENST00000540669 CC2D2BQ6DHV5 1058 aa13.03□□□□□ -0.32
VPS33A-204ENST00000540669 MPHOSPH8Q99549 860 aa13.03□□□□□ -0.32
VPS33A-204ENST00000540669 FPGT-TNNI3KV9GXZ4 949 aa13.03□□□□□ -0.32
VPS33A-204ENST00000540669 XDHP47989 1333 aa13.03□□□□□ -0.32
VPS33A-204ENST00000540669 SBF1O95248 1867 aa13.03□□□□□ -0.32
VPS33A-204ENST00000540669 MED23Q9ULK4 1368 aa13.03□□□□□ -0.32
VPS33A-204ENST00000540669 SCN9AQ15858 1988 aa13.03□□□□□ -0.32
VPS33A-204ENST00000540669 COL1A1P02452 1464 aaPredicted RBP13.03□□□□□ -0.32
VPS33A-204ENST00000540669 MAST2Q6P0Q8 1798 aa13.02□□□□□ -0.32
VPS33A-204ENST00000540669 UBE4AQ14139 1066 aa13.02□□□□□ -0.33
VPS33A-204ENST00000540669 PUM3Q15397 648 aaKnown RBP13.02□□□□□ -0.33
VPS33A-204ENST00000540669 TAF7LQ5H9L4 462 aa13.02□□□□□ -0.33
VPS33A-204ENST00000540669 TTLL6Q8N841 843 aa13.02□□□□□ -0.33
VPS33A-204ENST00000540669 ANKRD2Q9GZV1 360 aa13.02□□□□□ -0.33
VPS33A-204ENST00000540669 OSBPL3Q9H4L5 887 aa13.02□□□□□ -0.33
VPS33A-204ENST00000540669 CNNM1Q9NRU3 951 aa13.02□□□□□ -0.33
VPS33A-204ENST00000540669 STAP2Q9UGK3 403 aa13.02□□□□□ -0.33
VPS33A-204ENST00000540669 DBNLQ9UJU6 430 aaKnown RBP13.02□□□□□ -0.33
VPS33A-204ENST00000540669 AOX1Q06278 1338 aa13.02□□□□□ -0.33
VPS33A-204ENST00000540669 LTBP3Q9NS15 1303 aa13.02□□□□□ -0.33
VPS33A-204ENST00000540669 SMARCA5O60264 1052 aaPredicted RBP13.01□□□□□ -0.33
VPS33A-204ENST00000540669 GPSM2P81274 684 aa13.01□□□□□ -0.33
VPS33A-204ENST00000540669 METTL24Q5JXM2 366 aa13.01□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 13.6 ms