RNA–Protein interactions for RNA: ENST00000538708.5

PTPRB-204, Transcript of protein tyrosine phosphatase, receptor type B, humanhuman

TSL 1 (best) BASIC

Gene PTPRB, Length 5,839 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRB-204ENST00000538708 RTN1Q16799 776 aa10.9□□□□□ -0.66
PTPRB-204ENST00000538708 TEX11Q8IYF3 940 aa10.9□□□□□ -0.66
PTPRB-204ENST00000538708 HIBADHP31937 336 aaKnown RBP10.9□□□□□ -0.66
PTPRB-204ENST00000538708 TFCP2Q12800 502 aa10.9□□□□□ -0.66
PTPRB-204ENST00000538708 RTL9Q8NET4 1388 aa10.9□□□□□ -0.66
PTPRB-204ENST00000538708 H7C1D1 291 aa10.9□□□□□ -0.67
PTPRB-204ENST00000538708 PPIP5K2O43314 1243 aa10.9□□□□□ -0.67
PTPRB-204ENST00000538708 PPFIA3O75145 1194 aa10.9□□□□□ -0.67
PTPRB-204ENST00000538708 PHACTR2O75167 634 aa10.9□□□□□ -0.67
PTPRB-204ENST00000538708 SP4Q02446 784 aa10.9□□□□□ -0.67
PTPRB-204ENST00000538708 TMTC2Q8N394 836 aa10.9□□□□□ -0.67
PTPRB-204ENST00000538708 CTNNBL1Q8WYA6 563 aaPredicted RBP10.9□□□□□ -0.67
PTPRB-204ENST00000538708 LIMCH1Q9UPQ0 1083 aa10.9□□□□□ -0.67
PTPRB-204ENST00000538708 PA2G4Q9UQ80 394 aaKnown RBP10.9□□□□□ -0.67
PTPRB-204ENST00000538708 A0A1W2PP64 1363 aa10.9□□□□□ -0.67
PTPRB-204ENST00000538708 PLEKHH1Q9ULM0 1364 aa10.9□□□□□ -0.67
PTPRB-204ENST00000538708 KIF22Q14807 665 aa10.89□□□□□ -0.67
PTPRB-204ENST00000538708 MCMDC2Q4G0Z9 681 aa10.89□□□□□ -0.67
PTPRB-204ENST00000538708 ARHGEF10LQ9HCE6 1279 aa10.89□□□□□ -0.67
PTPRB-204ENST00000538708 C6orf50Q9HD87 102 aa10.89□□□□□ -0.67
PTPRB-204ENST00000538708 GPHNQ9NQX3 736 aaPredicted RBP10.89□□□□□ -0.67
PTPRB-204ENST00000538708 KLF18A0A0U1RQI7 1052 aa10.89□□□□□ -0.67
PTPRB-204ENST00000538708 ZBTB43O43298 467 aa10.89□□□□□ -0.67
PTPRB-204ENST00000538708 ITGA6P23229 1130 aa10.89□□□□□ -0.67
PTPRB-204ENST00000538708 MRE11P49959 708 aa10.89□□□□□ -0.67
PTPRB-204ENST00000538708 MAP3K11Q16584 847 aa10.89□□□□□ -0.67
PTPRB-204ENST00000538708 ORC3Q9UBD5 711 aaPredicted RBP10.89□□□□□ -0.67
PTPRB-204ENST00000538708 PRAG1Q86YV5 1406 aa10.89□□□□□ -0.67
PTPRB-204ENST00000538708 PRKCSHP14314 528 aaPredicted RBP10.89□□□□□ -0.67
PTPRB-204ENST00000538708 TTC6Q86TZ1 520 aa10.89□□□□□ -0.67
PTPRB-204ENST00000538708 CTNNA2P26232 953 aa10.89□□□□□ -0.67
PTPRB-204ENST00000538708 UBA7P41226 1012 aa10.89□□□□□ -0.67
PTPRB-204ENST00000538708 MTIF2P46199 727 aaKnown RBP10.89□□□□□ -0.67
PTPRB-204ENST00000538708 FAM212AQ96EL1 285 aa10.89□□□□□ -0.67
PTPRB-204ENST00000538708 COL17A1Q9UMD9 1497 aaPredicted RBP10.89□□□□□ -0.67
PTPRB-204ENST00000538708 C8orf58Q8NAV2 365 aa10.89□□□□□ -0.67
PTPRB-204ENST00000538708 PYM1Q9BRP8 204 aaKnown RBP10.89□□□□□ -0.67
PTPRB-204ENST00000538708 EXOC1Q9NV70 894 aa10.89□□□□□ -0.67
PTPRB-204ENST00000538708 MAP3K19Q56UN5 1328 aa10.89□□□□□ -0.67
PTPRB-204ENST00000538708 TNNT1P13805 278 aa10.88□□□□□ -0.67
PTPRB-204ENST00000538708 GJB2P29033 226 aa10.88□□□□□ -0.67
PTPRB-204ENST00000538708 BRDTQ58F21 947 aaPredicted RBP10.88□□□□□ -0.67
PTPRB-204ENST00000538708 SYNCQ9H7C4 482 aa10.88□□□□□ -0.67
PTPRB-204ENST00000538708 PDE8AO60658 829 aa10.88□□□□□ -0.67
PTPRB-204ENST00000538708 AXDND1Q5T1B0 1012 aaPredicted RBP10.88□□□□□ -0.67
PTPRB-204ENST00000538708 C2CD5Q86YS7 1000 aa10.88□□□□□ -0.67
PTPRB-204ENST00000538708 FAM89AQ96GI7 184 aa10.88□□□□□ -0.67
PTPRB-204ENST00000538708 MEIS3Q99687 375 aa10.88□□□□□ -0.67
PTPRB-204ENST00000538708 COMMD10Q9Y6G5 202 aa10.88□□□□□ -0.67
PTPRB-204ENST00000538708 SBNO1A3KN83 1393 aa10.88□□□□□ -0.67
PTPRB-204ENST00000538708 RNF113AO15541 343 aaKnown RBP10.88□□□□□ -0.67
PTPRB-204ENST00000538708 TAX1BP1Q86VP1 789 aa10.88□□□□□ -0.67
PTPRB-204ENST00000538708 PLBD2Q8NHP8 589 aa10.88□□□□□ -0.67
PTPRB-204ENST00000538708 BICC1Q9H694 974 aaKnown RBP10.88□□□□□ -0.67
PTPRB-204ENST00000538708 SLC52A2Q9HAB3 445 aa10.88□□□□□ -0.67
PTPRB-204ENST00000538708 RFX1P22670 979 aa10.88□□□□□ -0.67
PTPRB-204ENST00000538708 ZNF790Q6PG37 636 aa10.88□□□□□ -0.67
PTPRB-204ENST00000538708 CENPHQ9H3R5 247 aa10.88□□□□□ -0.67
PTPRB-204ENST00000538708 NEO1Q92859 1461 aa10.88□□□□□ -0.67
PTPRB-204ENST00000538708 SHANK2Q9UPX8 1470 aa10.88□□□□□ -0.67
PTPRB-204ENST00000538708 ZYXQ15942 572 aaKnown RBP10.87□□□□□ -0.67
PTPRB-204ENST00000538708 MRPL50Q8N5N7 158 aaKnown RBP10.87□□□□□ -0.67
PTPRB-204ENST00000538708 CCDC112Q8NEF3 446 aa10.87□□□□□ -0.67
PTPRB-204ENST00000538708 PABPN1LA6NDY0 278 aaKnown RBP10.87□□□□□ -0.67
PTPRB-204ENST00000538708 NBPF7P0C2Y1 421 aaPredicted RBP10.87□□□□□ -0.67
PTPRB-204ENST00000538708 MPNDQ8N594 471 aa10.87□□□□□ -0.67
PTPRB-204ENST00000538708 MACROD2A1Z1Q3 448 aa10.87□□□□□ -0.67
PTPRB-204ENST00000538708 STX6O43752 255 aa10.87□□□□□ -0.67
PTPRB-204ENST00000538708 TRIM37O94972 964 aa10.87□□□□□ -0.67
PTPRB-204ENST00000538708 C20orf194Q5TEA3 1177 aa10.87□□□□□ -0.67
PTPRB-204ENST00000538708 LINS1Q8NG48 757 aa10.87□□□□□ -0.67
PTPRB-204ENST00000538708 BACH1O14867 736 aa10.87□□□□□ -0.67
PTPRB-204ENST00000538708 TDRD12Q587J7 1177 aaKnown RBP10.87□□□□□ -0.67
PTPRB-204ENST00000538708 FAM114A1Q8IWE2 563 aa10.87□□□□□ -0.67
PTPRB-204ENST00000538708 ZNF526Q8TF50 670 aaPredicted RBP10.87□□□□□ -0.67
PTPRB-204ENST00000538708 SH3TC1Q8TE82 1336 aa10.87□□□□□ -0.67
PTPRB-204ENST00000538708 PARP1P09874 1014 aaKnown RBP10.87□□□□□ -0.67
PTPRB-204ENST00000538708 PSMD1Q99460 953 aa10.87□□□□□ -0.67
PTPRB-204ENST00000538708 NUP88Q99567 741 aaPredicted RBP10.87□□□□□ -0.67
PTPRB-204ENST00000538708 TCHPQ9BT92 498 aa10.87□□□□□ -0.67
PTPRB-204ENST00000538708 PKD2L1Q9P0L9 805 aa10.87□□□□□ -0.67
PTPRB-204ENST00000538708 TMEM2Q9UHN6 1383 aa10.86□□□□□ -0.67
PTPRB-204ENST00000538708 SBNO2Q9Y2G9 1366 aa10.86□□□□□ -0.67
PTPRB-204ENST00000538708 NPHP4O75161 1426 aaPredicted RBP10.86□□□□□ -0.67
PTPRB-204ENST00000538708 TTC22Q5TAA0 569 aa10.86□□□□□ -0.67
PTPRB-204ENST00000538708 LRSAM1Q6UWE0 723 aa10.86□□□□□ -0.67
PTPRB-204ENST00000538708 USP37Q86T82 979 aa10.86□□□□□ -0.67
PTPRB-204ENST00000538708 PANK2Q9BZ23 570 aa10.86□□□□□ -0.67
PTPRB-204ENST00000538708 SCAND2PQ9GZW5 306 aaPredicted RBP10.86□□□□□ -0.67
PTPRB-204ENST00000538708 ATP8B2P98198 1209 aa10.86□□□□□ -0.67
PTPRB-204ENST00000538708 PUM3Q15397 648 aaKnown RBP10.86□□□□□ -0.67
PTPRB-204ENST00000538708 DPH6Q7L8W6 267 aa10.86□□□□□ -0.67
PTPRB-204ENST00000538708 DCPSQ96C86 337 aaKnown RBP10.86□□□□□ -0.67
PTPRB-204ENST00000538708 HOMER2Q9NSB8 354 aa10.86□□□□□ -0.67
PTPRB-204ENST00000538708 ANO10Q9NW15 660 aa10.86□□□□□ -0.67
PTPRB-204ENST00000538708 APBB1IPQ7Z5R6 666 aaPredicted RBP10.86□□□□□ -0.67
PTPRB-204ENST00000538708 FSIP1Q8NA03 581 aa10.85□□□□□ -0.67
PTPRB-204ENST00000538708 EDC4Q6P2E9 1401 aaKnown RBP10.85□□□□□ -0.67
PTPRB-204ENST00000538708 KRT13P13646 458 aa10.85□□□□□ -0.67
PTPRB-204ENST00000538708 STAT6P42226 847 aa10.85□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 15.6 ms