RNA–Protein interactions for RNA: ENST00000536011.5

RTN3-207, Transcript of reticulon 3, humanhuman

TSL 2

Gene RTN3, Length 992 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-207ENST00000536011 CDC5LQ99459 802 aaKnown RBP16.81■□□□□ 0.28
RTN3-207ENST00000536011 POLLQ9UGP5 575 aa16.81■□□□□ 0.28
RTN3-207ENST00000536011 CNOT7Q9UIV1 285 aaKnown RBP16.81■□□□□ 0.28
RTN3-207ENST00000536011 GGA1Q9UJY5 639 aa16.81■□□□□ 0.28
RTN3-207ENST00000536011 RIMBP2O15034 1052 aa16.8■□□□□ 0.28
RTN3-207ENST00000536011 ECE2O60344 883 aa16.8■□□□□ 0.28
RTN3-207ENST00000536011 ECE1P42892 770 aa16.8■□□□□ 0.28
RTN3-207ENST00000536011 CTSWP56202 376 aa16.8■□□□□ 0.28
RTN3-207ENST00000536011 WDR63Q8IWG1 891 aa16.8■□□□□ 0.28
RTN3-207ENST00000536011 DBNDD1Q9H9R9 158 aa16.8■□□□□ 0.28
RTN3-207ENST00000536011 SEC31BQ9NQW1 1179 aa16.8■□□□□ 0.28
RTN3-207ENST00000536011 TRPM7Q96QT4 1865 aa16.8■□□□□ 0.28
RTN3-207ENST00000536011 XDHP47989 1333 aa16.79■□□□□ 0.28
RTN3-207ENST00000536011 FANCIQ9NVI1 1328 aa16.79■□□□□ 0.28
RTN3-207ENST00000536011 SLC4A2P04920 1241 aa16.79■□□□□ 0.28
RTN3-207ENST00000536011 MICALL2Q8IY33 904 aa16.79■□□□□ 0.28
RTN3-207ENST00000536011 PGAP2Q9UHJ9 254 aa16.79■□□□□ 0.28
RTN3-207ENST00000536011 PSMD14O00487 310 aa16.78■□□□□ 0.28
RTN3-207ENST00000536011 IGKV5-2P06315 115 aa16.78■□□□□ 0.28
RTN3-207ENST00000536011 MAP2K1Q02750 393 aaPredicted RBP16.78■□□□□ 0.28
RTN3-207ENST00000536011 PAXIP1Q6ZW49 1069 aaPredicted RBP16.78■□□□□ 0.28
RTN3-207ENST00000536011 MYH16Q9H6N6 1097 aa16.78■□□□□ 0.28
RTN3-207ENST00000536011 COL4A1P02462 1669 aa16.78■□□□□ 0.28
RTN3-207ENST00000536011 RTL9Q8NET4 1388 aa16.77■□□□□ 0.28
RTN3-207ENST00000536011 WDR33Q9C0J8 1336 aaKnown RBP16.77■□□□□ 0.28
RTN3-207ENST00000536011 MYH3P11055 1940 aa16.77■□□□□ 0.28
RTN3-207ENST00000536011 NEURL1BA8MQ27 555 aa16.77■□□□□ 0.28
RTN3-207ENST00000536011 TRAF5O00463 557 aa16.77■□□□□ 0.28
RTN3-207ENST00000536011 CTCFP49711 727 aaPredicted RBP16.77■□□□□ 0.28
RTN3-207ENST00000536011 FLIIQ13045 1269 aa16.77■□□□□ 0.28
RTN3-207ENST00000536011 FKBP5Q13451 457 aaPredicted RBP16.77■□□□□ 0.28
RTN3-207ENST00000536011 DOK7Q18PE1 504 aa16.77■□□□□ 0.28
RTN3-207ENST00000536011 CDC37L1Q7L3B6 337 aa16.77■□□□□ 0.28
RTN3-207ENST00000536011 CCDC85AQ96PX6 553 aaPredicted RBP16.77■□□□□ 0.28
RTN3-207ENST00000536011 CACNA1FO60840 1977 aa16.77■□□□□ 0.27
RTN3-207ENST00000536011 CELF2O95319 508 aaKnown RBP16.76■□□□□ 0.27
RTN3-207ENST00000536011 ATP2B4P23634 1241 aa16.76■□□□□ 0.27
RTN3-207ENST00000536011 TRPM4Q8TD43 1214 aa16.76■□□□□ 0.27
RTN3-207ENST00000536011 JARID2Q92833 1246 aaPredicted RBP16.76■□□□□ 0.27
RTN3-207ENST00000536011 ZBTB12Q9Y330 459 aaPredicted RBP16.76■□□□□ 0.27
RTN3-207ENST00000536011 TLL2Q9Y6L7 1015 aa16.76■□□□□ 0.27
RTN3-207ENST00000536011 FOXN1O15353 648 aa16.75■□□□□ 0.27
RTN3-207ENST00000536011 CWF19L2Q2TBE0 894 aaKnown RBP16.75■□□□□ 0.27
RTN3-207ENST00000536011 CST9Q5W186 159 aa16.75■□□□□ 0.27
RTN3-207ENST00000536011 UBE3BQ7Z3V4 1068 aa16.75■□□□□ 0.27
RTN3-207ENST00000536011 TTLL11Q8NHH1 800 aa16.75■□□□□ 0.27
RTN3-207ENST00000536011 CAPNS2Q96L46 248 aa16.75■□□□□ 0.27
RTN3-207ENST00000536011 GLIS2Q9BZE0 524 aaPredicted RBP16.75■□□□□ 0.27
RTN3-207ENST00000536011 PRDM10Q9NQV6 1147 aa16.75■□□□□ 0.27
RTN3-207ENST00000536011 WBP1LQ9NX94 342 aa16.75■□□□□ 0.27
RTN3-207ENST00000536011 THSD7BQ9C0I4 1608 aa16.74■□□□□ 0.27
RTN3-207ENST00000536011 ZNF609O15014 1411 aa16.74■□□□□ 0.27
RTN3-207ENST00000536011 VIL1P09327 827 aaKnown RBP16.74■□□□□ 0.27
RTN3-207ENST00000536011 HIRAP54198 1017 aaPredicted RBP16.74■□□□□ 0.27
RTN3-207ENST00000536011 G2E3Q7L622 706 aa16.74■□□□□ 0.27
RTN3-207ENST00000536011 LINS1Q8NG48 757 aa16.74■□□□□ 0.27
RTN3-207ENST00000536011 DNAAF4Q8WXU2 420 aa16.74■□□□□ 0.27
RTN3-207ENST00000536011 HHIPL1Q96JK4 782 aa16.74■□□□□ 0.27
RTN3-207ENST00000536011 GPR101Q96P66 508 aaPredicted RBP16.74■□□□□ 0.27
RTN3-207ENST00000536011 BEGAINQ9BUH8 593 aa16.74■□□□□ 0.27
RTN3-207ENST00000536011 BSDC1Q9NW68 430 aaPredicted RBP16.74■□□□□ 0.27
RTN3-207ENST00000536011 SALL2Q9Y467 1007 aaPredicted RBP16.74■□□□□ 0.27
RTN3-207ENST00000536011 U3KPZ7 1027 aaPredicted RBP16.74■□□□□ 0.27
RTN3-207ENST00000536011 H7C1W4 665 aa16.73■□□□□ 0.27
RTN3-207ENST00000536011 IGHMBP2P38935 993 aaKnown RBP16.73■□□□□ 0.27
RTN3-207ENST00000536011 FMR1Q06787 632 aaKnown RBP eCLIP16.73■□□□□ 0.27
RTN3-207ENST00000536011 GCKRQ14397 625 aa16.73■□□□□ 0.27
RTN3-207ENST00000536011 TBC1D10BQ4KMP7 808 aaPredicted RBP16.73■□□□□ 0.27
RTN3-207ENST00000536011 DCPSQ96C86 337 aaKnown RBP16.73■□□□□ 0.27
RTN3-207ENST00000536011 GREM2Q9H772 168 aa16.73■□□□□ 0.27
RTN3-207ENST00000536011 GRM1Q13255 1194 aa16.72■□□□□ 0.27
RTN3-207ENST00000536011 SAMD7Q7Z3H4 446 aa16.72■□□□□ 0.27
RTN3-207ENST00000536011 PODNQ7Z5L7 613 aa16.72■□□□□ 0.27
RTN3-207ENST00000536011 SAPCD2Q86UD0 394 aa16.72■□□□□ 0.27
RTN3-207ENST00000536011 AGBL3Q8NEM8 1001 aa16.72■□□□□ 0.27
RTN3-207ENST00000536011 PLA2G12BQ9BX93 195 aa16.72■□□□□ 0.27
RTN3-207ENST00000536011 ZNF408Q9H9D4 720 aa16.72■□□□□ 0.27
RTN3-207ENST00000536011 MED23Q9ULK4 1368 aa16.72■□□□□ 0.27
RTN3-207ENST00000536011 SHTN1A0MZ66 631 aa16.71■□□□□ 0.27
RTN3-207ENST00000536011 VAMP4O75379 141 aa16.71■□□□□ 0.27
RTN3-207ENST00000536011 MAP2K2P36507 400 aa16.71■□□□□ 0.27
RTN3-207ENST00000536011 EXOSC9Q06265 439 aaKnown RBP16.71■□□□□ 0.27
RTN3-207ENST00000536011 KIF4BQ2VIQ3 1234 aa16.71■□□□□ 0.27
RTN3-207ENST00000536011 CYP4F22Q6NT55 531 aa16.71■□□□□ 0.27
RTN3-207ENST00000536011 RSBN1LQ6PCB5 846 aaPredicted RBP16.71■□□□□ 0.27
RTN3-207ENST00000536011 KRT26Q7Z3Y9 468 aa16.71■□□□□ 0.27
RTN3-207ENST00000536011 FAM9BQ8IZU0 186 aa16.71■□□□□ 0.27
RTN3-207ENST00000536011 KCNQ5Q9NR82 932 aa16.71■□□□□ 0.27
RTN3-207ENST00000536011 ZBTB22O15209 634 aa16.7■□□□□ 0.26
RTN3-207ENST00000536011 USP48Q86UV5 1035 aa16.7■□□□□ 0.26
RTN3-207ENST00000536011 MPHOSPH8Q99549 860 aa16.7■□□□□ 0.26
RTN3-207ENST00000536011 ANKRD2Q9GZV1 360 aa16.7■□□□□ 0.26
RTN3-207ENST00000536011 MINPP1Q9UNW1 487 aa16.7■□□□□ 0.26
RTN3-207ENST00000536011 LEMD3Q9Y2U8 911 aa16.7■□□□□ 0.26
RTN3-207ENST00000536011 SPEF2Q9C093 1822 aa16.7■□□□□ 0.26
RTN3-207ENST00000536011 SCN9AQ15858 1988 aa16.69■□□□□ 0.26
RTN3-207ENST00000536011 PSME4Q14997 1843 aa16.69■□□□□ 0.26
RTN3-207ENST00000536011 USP17L3A6NCW0 530 aa16.69■□□□□ 0.26
RTN3-207ENST00000536011 USP17L4A6NCW7 530 aa16.69■□□□□ 0.26
RTN3-207ENST00000536011 ITGA6P23229 1130 aa16.69■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 120.8 ms