RNA–Protein interactions for RNA: ENST00000527720.5

USH1C-207, Transcript of USH1 protein network component harmonin, humanhuman

TSL 1 (best) BASIC

Gene USH1C, Length 2,278 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH1C-207ENST00000527720 HMGB1P09429 215 aaKnown RBP18.26■□□□□ 0.51
USH1C-207ENST00000527720 TIMM10P62072 90 aa18.26■□□□□ 0.51
USH1C-207ENST00000527720 HS1BP3Q53T59 392 aa18.26■□□□□ 0.51
USH1C-207ENST00000527720 PDLIM2Q96JY6 352 aa18.26■□□□□ 0.51
USH1C-207ENST00000527720 BTG4Q9NY30 223 aa18.26■□□□□ 0.51
USH1C-207ENST00000527720 CEP126Q9P2H0 1117 aa18.26■□□□□ 0.51
USH1C-207ENST00000527720 TAF6LQ9Y6J9 622 aa18.26■□□□□ 0.51
USH1C-207ENST00000527720 NUP98P52948 1817 aa18.25■□□□□ 0.51
USH1C-207ENST00000527720 GOLIM4O00461 696 aa18.25■□□□□ 0.51
USH1C-207ENST00000527720 ZMYM1Q5SVZ6 1142 aa18.25■□□□□ 0.51
USH1C-207ENST00000527720 LARP1BQ659C4 914 aaKnown RBP18.25■□□□□ 0.51
USH1C-207ENST00000527720 DNAJC10Q8IXB1 793 aa18.25■□□□□ 0.51
USH1C-207ENST00000527720 ZBTB38Q8NAP3 1195 aaPredicted RBP18.25■□□□□ 0.51
USH1C-207ENST00000527720 TSPY26PQ9H489 355 aa18.25■□□□□ 0.51
USH1C-207ENST00000527720 ASAP1Q9ULH1 1129 aa18.25■□□□□ 0.51
USH1C-207ENST00000527720 MAP3K15Q6ZN16 1313 aa18.25■□□□□ 0.51
USH1C-207ENST00000527720 CDHR2Q9BYE9 1310 aa18.25■□□□□ 0.51
USH1C-207ENST00000527720 IFIT1P09914 478 aaKnown RBP18.25■□□□□ 0.51
USH1C-207ENST00000527720 LRRFIP1Q32MZ4 808 aaKnown RBP18.25■□□□□ 0.51
USH1C-207ENST00000527720 CCDC183Q5T5S1 534 aa18.25■□□□□ 0.51
USH1C-207ENST00000527720 ZNF594Q96JF6 807 aaPredicted RBP18.25■□□□□ 0.51
USH1C-207ENST00000527720 SEC62Q99442 399 aaKnown RBP18.25■□□□□ 0.51
USH1C-207ENST00000527720 BCL9O00512 1426 aa18.24■□□□□ 0.51
USH1C-207ENST00000527720 CSF1RP07333 972 aa18.24■□□□□ 0.51
USH1C-207ENST00000527720 CYP21A2P08686 494 aa18.24■□□□□ 0.51
USH1C-207ENST00000527720 HSP90AB3PQ58FF7 597 aa18.24■□□□□ 0.51
USH1C-207ENST00000527720 GIGYF2Q6Y7W6 1299 aaKnown RBP18.24■□□□□ 0.51
USH1C-207ENST00000527720 CCDC129Q6ZRS4 1044 aa18.24■□□□□ 0.51
USH1C-207ENST00000527720 ABCC12Q96J65 1359 aa18.24■□□□□ 0.51
USH1C-207ENST00000527720 VPS37CA5D8V6 355 aaPredicted RBP18.23■□□□□ 0.51
USH1C-207ENST00000527720 COL9A3Q14050 684 aaPredicted RBP18.23■□□□□ 0.51
USH1C-207ENST00000527720 RNF113AO15541 343 aaKnown RBP18.23■□□□□ 0.51
USH1C-207ENST00000527720 CCDC158Q5M9N0 1113 aa18.23■□□□□ 0.51
USH1C-207ENST00000527720 KAT6BQ8WYB5 2073 aa18.22■□□□□ 0.51
USH1C-207ENST00000527720 FAM184AQ8NB25 1140 aa18.22■□□□□ 0.51
USH1C-207ENST00000527720 GTF3C6Q969F1 213 aa18.22■□□□□ 0.51
USH1C-207ENST00000527720 TCEANC2Q96MN5 208 aa18.22■□□□□ 0.51
USH1C-207ENST00000527720 PUS3Q9BZE2 481 aaKnown RBP18.22■□□□□ 0.51
USH1C-207ENST00000527720 COL16A1Q07092 1604 aaPredicted RBP18.22■□□□□ 0.51
USH1C-207ENST00000527720 AHDC1Q5TGY3 1603 aaPredicted RBP18.22■□□□□ 0.51
USH1C-207ENST00000527720 FIBPO43427 364 aa18.21■□□□□ 0.51
USH1C-207ENST00000527720 DNM1Q05193 864 aaKnown RBP18.21■□□□□ 0.51
USH1C-207ENST00000527720 IFIT5Q13325 482 aaKnown RBP18.21■□□□□ 0.51
USH1C-207ENST00000527720 Q6ZUG5 572 aa18.21■□□□□ 0.51
USH1C-207ENST00000527720 ZNF330Q9Y3S2 320 aaPredicted RBP18.21■□□□□ 0.51
USH1C-207ENST00000527720 ELP1O95163 1332 aa18.21■□□□□ 0.51
USH1C-207ENST00000527720 ROBO1Q9Y6N7 1651 aa18.2■□□□□ 0.5
USH1C-207ENST00000527720 CHGBP05060 677 aa18.2■□□□□ 0.5
USH1C-207ENST00000527720 ZFYP08048 801 aaPredicted RBP18.2■□□□□ 0.5
USH1C-207ENST00000527720 KRT85P78386 507 aa18.2■□□□□ 0.5
USH1C-207ENST00000527720 MYH15Q9Y2K3 1946 aa18.2■□□□□ 0.5
USH1C-207ENST00000527720 DHX32Q7L7V1 743 aaKnown RBP18.2■□□□□ 0.5
USH1C-207ENST00000527720 ZSCAN30Q86W11 494 aa18.2■□□□□ 0.5
USH1C-207ENST00000527720 FAM89AQ96GI7 184 aa18.2■□□□□ 0.5
USH1C-207ENST00000527720 CCDC9Q9Y3X0 531 aaKnown RBP18.2■□□□□ 0.5
USH1C-207ENST00000527720 CYP19A1P11511 503 aaPredicted RBP18.19■□□□□ 0.5
USH1C-207ENST00000527720 UVSSAQ2YD98 709 aa18.19■□□□□ 0.5
USH1C-207ENST00000527720 TAF7LQ5H9L4 462 aa18.19■□□□□ 0.5
USH1C-207ENST00000527720 TTC39AQ5SRH9 613 aa18.19■□□□□ 0.5
USH1C-207ENST00000527720 XAGE2Q96GT9 111 aa18.19■□□□□ 0.5
USH1C-207ENST00000527720 LLPHQ9BRT6 129 aaKnown RBP18.19■□□□□ 0.5
USH1C-207ENST00000527720 MAST3O60307 1309 aa18.19■□□□□ 0.5
USH1C-207ENST00000527720 AKAP11Q9UKA4 1901 aa18.19■□□□□ 0.5
USH1C-207ENST00000527720 HSPD1P10809 573 aaKnown RBP18.19■□□□□ 0.5
USH1C-207ENST00000527720 CDC37L1Q7L3B6 337 aa18.19■□□□□ 0.5
USH1C-207ENST00000527720 NLRP10Q86W26 655 aa18.19■□□□□ 0.5
USH1C-207ENST00000527720 AGXT2Q9BYV1 514 aa18.19■□□□□ 0.5
USH1C-207ENST00000527720 DOT1LQ8TEK3 1739 aa18.19■□□□□ 0.5
USH1C-207ENST00000527720 GORABQ5T7V8 394 aa18.18■□□□□ 0.5
USH1C-207ENST00000527720 EXOC5O00471 708 aa18.18■□□□□ 0.5
USH1C-207ENST00000527720 STOX1Q6ZVD7 989 aa18.18■□□□□ 0.5
USH1C-207ENST00000527720 ERVV-1B6SEH8 477 aa18.17■□□□□ 0.5
USH1C-207ENST00000527720 STK3Q13188 491 aa18.17■□□□□ 0.5
USH1C-207ENST00000527720 CHMP4CQ96CF2 233 aa18.17■□□□□ 0.5
USH1C-207ENST00000527720 SCAND2PQ9GZW5 306 aaPredicted RBP18.17■□□□□ 0.5
USH1C-207ENST00000527720 RIC1Q4ADV7 1423 aa18.17■□□□□ 0.5
USH1C-207ENST00000527720 NWD2Q9ULI1 1742 aa18.16■□□□□ 0.5
USH1C-207ENST00000527720 PFKFB2O60825 505 aa18.16■□□□□ 0.5
USH1C-207ENST00000527720 HSP90B1P14625 803 aaKnown RBP18.16■□□□□ 0.5
USH1C-207ENST00000527720 EXOSC10Q01780 885 aaKnown RBP18.16■□□□□ 0.5
USH1C-207ENST00000527720 HLFQ16534 295 aa18.16■□□□□ 0.5
USH1C-207ENST00000527720 FBXL16Q8N461 479 aa18.16■□□□□ 0.5
USH1C-207ENST00000527720 TTLL11Q8NHH1 800 aa18.16■□□□□ 0.5
USH1C-207ENST00000527720 SMARCC2Q8TAQ2 1214 aa18.16■□□□□ 0.5
USH1C-207ENST00000527720 CTNNA3Q9UI47 895 aa18.16■□□□□ 0.5
USH1C-207ENST00000527720 RIPOR2Q9Y4F9 1068 aa18.16■□□□□ 0.5
USH1C-207ENST00000527720 IL6STP40189 918 aaPredicted RBP18.15■□□□□ 0.5
USH1C-207ENST00000527720 CTSWP56202 376 aa18.15■□□□□ 0.5
USH1C-207ENST00000527720 FGD1P98174 961 aa18.15■□□□□ 0.5
USH1C-207ENST00000527720 BRF1Q92994 677 aa18.15■□□□□ 0.5
USH1C-207ENST00000527720 ZNF512BQ96KM6 892 aaPredicted RBP18.15■□□□□ 0.5
USH1C-207ENST00000527720 SLC4A9Q96Q91 983 aa18.15■□□□□ 0.5
USH1C-207ENST00000527720 CDCA7Q9BWT1 371 aaPredicted RBP18.15■□□□□ 0.5
USH1C-207ENST00000527720 ARAP2Q8WZ64 1704 aa18.15■□□□□ 0.5
USH1C-207ENST00000527720 ANKRD18BA2A2Z9 1011 aa18.15■□□□□ 0.5
USH1C-207ENST00000527720 E7EWF7 191 aa18.15■□□□□ 0.5
USH1C-207ENST00000527720 FKBP4Q02790 459 aaKnown RBP eCLIP18.15■□□□□ 0.5
USH1C-207ENST00000527720 DDX60Q8IY21 1712 aaKnown RBP18.14■□□□□ 0.5
USH1C-207ENST00000527720 CICQ96RK0 1608 aaPredicted RBP18.14■□□□□ 0.49
USH1C-207ENST00000527720 M0R2C6 588 aa18.14■□□□□ 0.49
Retrieved 100 of 20,778 RNA–protein pairs in 43.2 ms