RNA–Protein interactions for RNA: ENST00000527158.2

SNRNP35-204, Transcript of small nuclear ribonucleoprotein U11/U12 subunit 35, humanhuman

TSL 1 (best)

Gene SNRNP35, Length 2,161 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNRNP35-204ENST00000527158 USPL1Q5W0Q7 1092 aa19.5■□□□□ 0.71
SNRNP35-204ENST00000527158 RIC1Q4ADV7 1423 aa19.5■□□□□ 0.71
SNRNP35-204ENST00000527158 PDE8BO95263 885 aa19.5■□□□□ 0.71
SNRNP35-204ENST00000527158 KRT27Q7Z3Y8 459 aa19.5■□□□□ 0.71
SNRNP35-204ENST00000527158 RTL9Q8NET4 1388 aa19.49■□□□□ 0.71
SNRNP35-204ENST00000527158 GTF2E1P29083 439 aaPredicted RBP19.49■□□□□ 0.71
SNRNP35-204ENST00000527158 ADORA1P30542 326 aa19.49■□□□□ 0.71
SNRNP35-204ENST00000527158 KCNJ4P48050 445 aa19.49■□□□□ 0.71
SNRNP35-204ENST00000527158 BICDL1Q6ZP65 573 aa19.49■□□□□ 0.71
SNRNP35-204ENST00000527158 SNX14Q9Y5W7 946 aa19.49■□□□□ 0.71
SNRNP35-204ENST00000527158 SBF2Q86WG5 1849 aa19.49■□□□□ 0.71
SNRNP35-204ENST00000527158 IGHMBP2P38935 993 aaKnown RBP19.49■□□□□ 0.71
SNRNP35-204ENST00000527158 TBC1D9BQ66K14 1250 aa19.49■□□□□ 0.71
SNRNP35-204ENST00000527158 SMIM5Q71RC9 77 aa19.49■□□□□ 0.71
SNRNP35-204ENST00000527158 VGLL2Q8N8G2 317 aa19.49■□□□□ 0.71
SNRNP35-204ENST00000527158 MAP4K1Q92918 833 aa19.49■□□□□ 0.71
SNRNP35-204ENST00000527158 SETDB2Q96T68 719 aa19.49■□□□□ 0.71
SNRNP35-204ENST00000527158 CIZ1Q9ULV3 898 aaPredicted RBP19.49■□□□□ 0.71
SNRNP35-204ENST00000527158 MED23Q9ULK4 1368 aa19.48■□□□□ 0.71
SNRNP35-204ENST00000527158 NYXQ9GZU5 481 aa19.48■□□□□ 0.71
SNRNP35-204ENST00000527158 BCL2L12Q9HB09 334 aa19.48■□□□□ 0.71
SNRNP35-204ENST00000527158 BRPF3Q9ULD4 1205 aa19.48■□□□□ 0.71
SNRNP35-204ENST00000527158 ABCC12Q96J65 1359 aa19.48■□□□□ 0.71
SNRNP35-204ENST00000527158 ZKSCAN1P17029 563 aaPredicted RBP19.47■□□□□ 0.71
SNRNP35-204ENST00000527158 DDIT3P35638 169 aa19.47■□□□□ 0.71
SNRNP35-204ENST00000527158 FKBP4Q02790 459 aaKnown RBP eCLIP19.47■□□□□ 0.71
SNRNP35-204ENST00000527158 LRRFIP1Q32MZ4 808 aaKnown RBP19.47■□□□□ 0.71
SNRNP35-204ENST00000527158 ERFEQ4G0M1 354 aa19.47■□□□□ 0.71
SNRNP35-204ENST00000527158 ARHGEF1Q92888 912 aaKnown RBP19.47■□□□□ 0.71
SNRNP35-204ENST00000527158 SEC31BQ9NQW1 1179 aa19.47■□□□□ 0.71
SNRNP35-204ENST00000527158 FOXD4L1Q9NU39 408 aa19.47■□□□□ 0.71
SNRNP35-204ENST00000527158 LY75O60449 1722 aa19.47■□□□□ 0.71
SNRNP35-204ENST00000527158 PUM3Q15397 648 aaKnown RBP19.47■□□□□ 0.71
SNRNP35-204ENST00000527158 MCMDC2Q4G0Z9 681 aa19.47■□□□□ 0.71
SNRNP35-204ENST00000527158 TRAPPC3LQ5T215 181 aa19.47■□□□□ 0.71
SNRNP35-204ENST00000527158 PRPF40BQ6NWY9 871 aaKnown RBP19.47■□□□□ 0.71
SNRNP35-204ENST00000527158 SRP68Q9UHB9 627 aaKnown RBP19.47■□□□□ 0.71
SNRNP35-204ENST00000527158 NECTIN1Q15223 517 aa19.46■□□□□ 0.71
SNRNP35-204ENST00000527158 RASEFQ8IZ41 740 aa19.46■□□□□ 0.71
SNRNP35-204ENST00000527158 UPF3BQ9BZI7 483 aaKnown RBP19.46■□□□□ 0.71
SNRNP35-204ENST00000527158 RBM8AQ9Y5S9 174 aaKnown RBP19.46■□□□□ 0.71
SNRNP35-204ENST00000527158 MCM4P33991 863 aa19.46■□□□□ 0.71
SNRNP35-204ENST00000527158 RFC4P35249 363 aa19.46■□□□□ 0.71
SNRNP35-204ENST00000527158 RNF20Q5VTR2 975 aa19.46■□□□□ 0.71
SNRNP35-204ENST00000527158 ZNF772Q68DY9 489 aaPredicted RBP19.46■□□□□ 0.71
SNRNP35-204ENST00000527158 LPIN2Q92539 896 aa19.46■□□□□ 0.71
SNRNP35-204ENST00000527158 KCNB2Q92953 911 aa19.46■□□□□ 0.71
SNRNP35-204ENST00000527158 CDC5LQ99459 802 aaKnown RBP19.46■□□□□ 0.71
SNRNP35-204ENST00000527158 SCN7AQ01118 1682 aa19.45■□□□□ 0.7
SNRNP35-204ENST00000527158 ZNF589Q86UQ0 364 aaPredicted RBP19.45■□□□□ 0.7
SNRNP35-204ENST00000527158 HELLSQ9NRZ9 838 aa19.45■□□□□ 0.7
SNRNP35-204ENST00000527158 DDX60Q8IY21 1712 aaKnown RBP19.45■□□□□ 0.7
SNRNP35-204ENST00000527158 SF3B3Q15393 1217 aaKnown RBP19.44■□□□□ 0.7
SNRNP35-204ENST00000527158 SLC10A5Q5PT55 438 aa19.44■□□□□ 0.7
SNRNP35-204ENST00000527158 NBPF5PQ86XG9 351 aaPredicted RBP19.44■□□□□ 0.7
SNRNP35-204ENST00000527158 ZNF512BQ96KM6 892 aaPredicted RBP19.44■□□□□ 0.7
SNRNP35-204ENST00000527158 LRP5O75197 1615 aa19.44■□□□□ 0.7
SNRNP35-204ENST00000527158 DDX11L8A8MPP1 907 aa19.44■□□□□ 0.7
SNRNP35-204ENST00000527158 TAF5LO75529 589 aa19.44■□□□□ 0.7
SNRNP35-204ENST00000527158 PTMSP20962 102 aa19.44■□□□□ 0.7
SNRNP35-204ENST00000527158 PHF14O94880 888 aa19.43■□□□□ 0.7
SNRNP35-204ENST00000527158 SLC5A1P13866 664 aa19.43■□□□□ 0.7
SNRNP35-204ENST00000527158 SSFA2P28290 1259 aa19.43■□□□□ 0.7
SNRNP35-204ENST00000527158 LAMB2P55268 1798 aa19.43■□□□□ 0.7
SNRNP35-204ENST00000527158 SLC27A3Q5K4L6 730 aa19.43■□□□□ 0.7
SNRNP35-204ENST00000527158 CREB3L3Q68CJ9 461 aa19.43■□□□□ 0.7
SNRNP35-204ENST00000527158 TPTE2Q6XPS3 522 aa19.43■□□□□ 0.7
SNRNP35-204ENST00000527158 HELBQ8NG08 1087 aaPredicted RBP19.43■□□□□ 0.7
SNRNP35-204ENST00000527158 SPEF2Q9C093 1822 aa19.43■□□□□ 0.7
SNRNP35-204ENST00000527158 LRRC4BQ9NT99 713 aa19.43■□□□□ 0.7
SNRNP35-204ENST00000527158 C4BP0C0L5 1744 aa19.43■□□□□ 0.7
SNRNP35-204ENST00000527158 RNF113AO15541 343 aaKnown RBP19.43■□□□□ 0.7
SNRNP35-204ENST00000527158 ADRA2BP18089 450 aa19.43■□□□□ 0.7
SNRNP35-204ENST00000527158 RBM6P78332 1123 aaKnown RBP19.43■□□□□ 0.7
SNRNP35-204ENST00000527158 FAM43AQ8N2R8 423 aa19.43■□□□□ 0.7
SNRNP35-204ENST00000527158 TM6SF1Q9BZW5 370 aa19.43■□□□□ 0.7
SNRNP35-204ENST00000527158 CWC22Q9HCG8 908 aaKnown RBP19.43■□□□□ 0.7
SNRNP35-204ENST00000527158 TRIM37O94972 964 aa19.42■□□□□ 0.7
SNRNP35-204ENST00000527158 FGFR2P21802 821 aa19.42■□□□□ 0.7
SNRNP35-204ENST00000527158 TMX3Q96JJ7 454 aa19.42■□□□□ 0.7
SNRNP35-204ENST00000527158 TAF1LQ8IZX4 1826 aa19.42■□□□□ 0.7
SNRNP35-204ENST00000527158 ZFYP08048 801 aaPredicted RBP19.42■□□□□ 0.7
SNRNP35-204ENST00000527158 UQCRFS1P1P0C7P4 283 aa19.42■□□□□ 0.7
SNRNP35-204ENST00000527158 CASTP20810 708 aaKnown RBP19.42■□□□□ 0.7
SNRNP35-204ENST00000527158 HMGB2P26583 209 aaKnown RBP19.42■□□□□ 0.7
SNRNP35-204ENST00000527158 ZAP70P43403 619 aa19.42■□□□□ 0.7
SNRNP35-204ENST00000527158 AMIGO3Q86WK7 504 aa19.42■□□□□ 0.7
SNRNP35-204ENST00000527158 ANKRD18AQ8IVF6 992 aa19.42■□□□□ 0.7
SNRNP35-204ENST00000527158 SEC62Q99442 399 aaKnown RBP19.42■□□□□ 0.7
SNRNP35-204ENST00000527158 HMG20BQ9P0W2 317 aa19.42■□□□□ 0.7
SNRNP35-204ENST00000527158 ISY1Q9ULR0 285 aaKnown RBP19.42■□□□□ 0.7
SNRNP35-204ENST00000527158 SLC27A2O14975 620 aa19.41■□□□□ 0.7
SNRNP35-204ENST00000527158 SCARF1Q14162 830 aa19.41■□□□□ 0.7
SNRNP35-204ENST00000527158 ZMYM1Q5SVZ6 1142 aa19.41■□□□□ 0.7
SNRNP35-204ENST00000527158 CCDC102BQ68D86 513 aa19.41■□□□□ 0.7
SNRNP35-204ENST00000527158 JAKMIP1Q96N16 626 aaKnown RBP19.41■□□□□ 0.7
SNRNP35-204ENST00000527158 NLRP3Q96P20 1036 aa19.41■□□□□ 0.7
SNRNP35-204ENST00000527158 CHGBP05060 677 aa19.4■□□□□ 0.7
SNRNP35-204ENST00000527158 PSMA5P28066 241 aa19.4■□□□□ 0.7
SNRNP35-204ENST00000527158 TTF1Q15361 905 aaPredicted RBP19.4■□□□□ 0.7
Retrieved 100 of 20,778 RNA–protein pairs in 19.5 ms