RNA–Protein interactions for RNA: ENST00000526313.5

USH1C-204, Transcript of USH1 protein network component harmonin, humanhuman

TSL 1 (best)

Gene USH1C, Length 2,149 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH1C-204ENST00000526313 ZMYM1Q5SVZ6 1142 aa19.09■□□□□ 0.65
USH1C-204ENST00000526313 SMARCC1Q92922 1105 aaPredicted RBP19.09■□□□□ 0.65
USH1C-204ENST00000526313 XAGE2Q96GT9 111 aa19.09■□□□□ 0.65
USH1C-204ENST00000526313 MYH14Q7Z406 1995 aaKnown RBP19.08■□□□□ 0.65
USH1C-204ENST00000526313 CHGBP05060 677 aa19.08■□□□□ 0.64
USH1C-204ENST00000526313 SEC62Q99442 399 aaKnown RBP19.08■□□□□ 0.64
USH1C-204ENST00000526313 SH2B1Q9NRF2 756 aaPredicted RBP19.08■□□□□ 0.64
USH1C-204ENST00000526313 U3KPZ7 1027 aaPredicted RBP19.08■□□□□ 0.64
USH1C-204ENST00000526313 ABCC12Q96J65 1359 aa19.08■□□□□ 0.64
USH1C-204ENST00000526313 ANKRD18BA2A2Z9 1011 aa19.07■□□□□ 0.64
USH1C-204ENST00000526313 TAF7LQ5H9L4 462 aa19.07■□□□□ 0.64
USH1C-204ENST00000526313 MCTP1Q6DN14 999 aa19.07■□□□□ 0.64
USH1C-204ENST00000526313 CCDC85AQ96PX6 553 aaPredicted RBP19.07■□□□□ 0.64
USH1C-204ENST00000526313 GZF1Q9H116 711 aaPredicted RBP19.07■□□□□ 0.64
USH1C-204ENST00000526313 CAMTA2O94983 1202 aa19.07■□□□□ 0.64
USH1C-204ENST00000526313 ADORA1P30542 326 aa19.07■□□□□ 0.64
USH1C-204ENST00000526313 CCDC158Q5M9N0 1113 aa19.07■□□□□ 0.64
USH1C-204ENST00000526313 VGLL2Q8N8G2 317 aa19.07■□□□□ 0.64
USH1C-204ENST00000526313 CCDC9Q9Y3X0 531 aaKnown RBP19.07■□□□□ 0.64
USH1C-204ENST00000526313 ZSCAN21Q9Y5A6 473 aaPredicted RBP19.07■□□□□ 0.64
USH1C-204ENST00000526313 TAF6LQ9Y6J9 622 aa19.07■□□□□ 0.64
USH1C-204ENST00000526313 L1TD1Q5T7N2 865 aaKnown RBP19.06■□□□□ 0.64
USH1C-204ENST00000526313 LDHAL6AQ6ZMR3 332 aa19.06■□□□□ 0.64
USH1C-204ENST00000526313 LRP5O75197 1615 aa19.06■□□□□ 0.64
USH1C-204ENST00000526313 LARGE1O95461 756 aa19.06■□□□□ 0.64
USH1C-204ENST00000526313 RPS6KB1P23443 525 aa19.06■□□□□ 0.64
USH1C-204ENST00000526313 KRT32Q14532 448 aa19.06■□□□□ 0.64
USH1C-204ENST00000526313 FNBP4Q8N3X1 1017 aaPredicted RBP19.06■□□□□ 0.64
USH1C-204ENST00000526313 ZNF512BQ96KM6 892 aaPredicted RBP19.06■□□□□ 0.64
USH1C-204ENST00000526313 ISY1Q9ULR0 285 aaKnown RBP19.06■□□□□ 0.64
USH1C-204ENST00000526313 COL5A3P25940 1745 aaPredicted RBP19.05■□□□□ 0.64
USH1C-204ENST00000526313 RNF113AO15541 343 aaKnown RBP19.05■□□□□ 0.64
USH1C-204ENST00000526313 COL9A3Q14050 684 aaPredicted RBP19.05■□□□□ 0.64
USH1C-204ENST00000526313 BLOC1S2Q6QNY1 142 aa19.05■□□□□ 0.64
USH1C-204ENST00000526313 CCDC129Q6ZRS4 1044 aa19.05■□□□□ 0.64
USH1C-204ENST00000526313 KCNQ2O43526 872 aa19.04■□□□□ 0.64
USH1C-204ENST00000526313 PARP10Q53GL7 1025 aa19.04■□□□□ 0.64
USH1C-204ENST00000526313 SUSD4Q5VX71 490 aa19.04■□□□□ 0.64
USH1C-204ENST00000526313 DSCC1Q9BVC3 393 aa19.04■□□□□ 0.64
USH1C-204ENST00000526313 WDR33Q9C0J8 1336 aaKnown RBP19.04■□□□□ 0.64
USH1C-204ENST00000526313 UBAP1LF5GYI3 381 aa19.04■□□□□ 0.64
USH1C-204ENST00000526313 ST3GAL1Q11201 340 aa19.04■□□□□ 0.64
USH1C-204ENST00000526313 ATP2B3Q16720 1220 aa19.04■□□□□ 0.64
USH1C-204ENST00000526313 ME3Q16798 604 aa19.04■□□□□ 0.64
USH1C-204ENST00000526313 LARP6Q9BRS8 491 aaKnown RBP19.04■□□□□ 0.64
USH1C-204ENST00000526313 GOLGA6L3A6NEY3 463 aa19.03■□□□□ 0.64
USH1C-204ENST00000526313 ANKRD1Q15327 319 aa19.03■□□□□ 0.64
USH1C-204ENST00000526313 METTL24Q5JXM2 366 aa19.03■□□□□ 0.64
USH1C-204ENST00000526313 TTC39AQ5SRH9 613 aa19.03■□□□□ 0.64
USH1C-204ENST00000526313 FAM98CQ17RN3 349 aaKnown RBP19.03■□□□□ 0.64
USH1C-204ENST00000526313 TPCN1Q9ULQ1 816 aa19.03■□□□□ 0.64
USH1C-204ENST00000526313 DDX49Q9Y6V7 483 aaKnown RBP19.03■□□□□ 0.64
USH1C-204ENST00000526313 CYP21A2P08686 494 aa19.02■□□□□ 0.64
USH1C-204ENST00000526313 GORABQ5T7V8 394 aa19.02■□□□□ 0.64
USH1C-204ENST00000526313 NGLY1Q96IV0 654 aa19.02■□□□□ 0.64
USH1C-204ENST00000526313 UTP14AQ9BVJ6 771 aaKnown RBP19.02■□□□□ 0.64
USH1C-204ENST00000526313 PDE8BO95263 885 aa19.01■□□□□ 0.63
USH1C-204ENST00000526313 ZFYP08048 801 aaPredicted RBP19.01■□□□□ 0.63
USH1C-204ENST00000526313 TOB2Q14106 344 aaPredicted RBP19.01■□□□□ 0.63
USH1C-204ENST00000526313 LRRFIP1Q32MZ4 808 aaKnown RBP19.01■□□□□ 0.63
USH1C-204ENST00000526313 CNNM1Q9NRU3 951 aa19.01■□□□□ 0.63
USH1C-204ENST00000526313 RTL9Q8NET4 1388 aa19.01■□□□□ 0.63
USH1C-204ENST00000526313 SCARF1Q14162 830 aa19.01■□□□□ 0.63
USH1C-204ENST00000526313 SLFNL1Q499Z3 407 aa19.01■□□□□ 0.63
USH1C-204ENST00000526313 SMC3Q9UQE7 1217 aa19.01■□□□□ 0.63
USH1C-204ENST00000526313 AKAP11Q9UKA4 1901 aa19.01■□□□□ 0.63
USH1C-204ENST00000526313 MAST3O60307 1309 aa19.01■□□□□ 0.63
USH1C-204ENST00000526313 RGL2O15211 777 aa19■□□□□ 0.63
USH1C-204ENST00000526313 PRPF40AO75400 957 aaKnown RBP19■□□□□ 0.63
USH1C-204ENST00000526313 C8orf37Q96NL8 207 aa19■□□□□ 0.63
USH1C-204ENST00000526313 NEK1Q96PY6 1258 aa19■□□□□ 0.63
USH1C-204ENST00000526313 DDX60Q8IY21 1712 aaKnown RBP19■□□□□ 0.63
USH1C-204ENST00000526313 A0A0G2JS52 829 aa19■□□□□ 0.63
USH1C-204ENST00000526313 NTSR2O95665 410 aa19■□□□□ 0.63
USH1C-204ENST00000526313 SYT1P21579 422 aa19■□□□□ 0.63
USH1C-204ENST00000526313 FGFR2P21802 821 aa19■□□□□ 0.63
USH1C-204ENST00000526313 FKBP4Q02790 459 aaKnown RBP eCLIP19■□□□□ 0.63
USH1C-204ENST00000526313 CLEC4GQ6UXB4 293 aa19■□□□□ 0.63
USH1C-204ENST00000526313 CCDC83Q8IWF9 413 aa19■□□□□ 0.63
USH1C-204ENST00000526313 MROH5Q6ZUA9 1318 aa19■□□□□ 0.63
USH1C-204ENST00000526313 BCORQ6W2J9 1755 aa18.99■□□□□ 0.63
USH1C-204ENST00000526313 HSPD1P10809 573 aaKnown RBP18.99■□□□□ 0.63
USH1C-204ENST00000526313 CHAMP1Q96JM3 812 aa18.99■□□□□ 0.63
USH1C-204ENST00000526313 LAMB2P55268 1798 aa18.99■□□□□ 0.63
USH1C-204ENST00000526313 STX6O43752 255 aa18.98■□□□□ 0.63
USH1C-204ENST00000526313 XRCC6P12956 609 aaKnown RBP eCLIP18.98■□□□□ 0.63
USH1C-204ENST00000526313 HSP90B1P14625 803 aaKnown RBP18.98■□□□□ 0.63
USH1C-204ENST00000526313 ZAP70P43403 619 aa18.98■□□□□ 0.63
USH1C-204ENST00000526313 FOXD4L5Q5VV16 416 aaPredicted RBP18.98■□□□□ 0.63
USH1C-204ENST00000526313 FOXD4L4Q8WXT5 416 aaPredicted RBP18.98■□□□□ 0.63
USH1C-204ENST00000526313 OSBP2Q969R2 916 aa18.98■□□□□ 0.63
USH1C-204ENST00000526313 M0R2C6 588 aa18.98■□□□□ 0.63
USH1C-204ENST00000526313 ZSCAN22P10073 491 aaPredicted RBP18.98■□□□□ 0.63
USH1C-204ENST00000526313 HCLS1P14317 486 aaPredicted RBP18.98■□□□□ 0.63
USH1C-204ENST00000526313 PDIA4P13667 645 aaKnown RBP18.97■□□□□ 0.63
USH1C-204ENST00000526313 GJB2P29033 226 aa18.97■□□□□ 0.63
USH1C-204ENST00000526313 MCAMP43121 646 aa18.97■□□□□ 0.63
USH1C-204ENST00000526313 MRE11P49959 708 aa18.97■□□□□ 0.63
USH1C-204ENST00000526313 SPATA31A6Q5VVP1 1343 aa18.97■□□□□ 0.63
USH1C-204ENST00000526313 STOX1Q6ZVD7 989 aa18.97■□□□□ 0.63
Retrieved 100 of 20,778 RNA–protein pairs in 11.5 ms