RNA–Protein interactions for RNA: ENST00000523867.5

HDAC9-227, Transcript of histone deacetylase 9, humanhuman

TSL 1 (best)

Gene HDAC9, Length 2,640 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC9-227ENST00000523867 V9GYY5 206 aaPredicted RBP8.61□□□□□ -1.03
HDAC9-227ENST00000523867 SBNO1A3KN83 1393 aa8.61□□□□□ -1.03
HDAC9-227ENST00000523867 NWD1Q149M9 1564 aa8.61□□□□□ -1.03
HDAC9-227ENST00000523867 KDRP35968 1356 aa8.61□□□□□ -1.03
HDAC9-227ENST00000523867 GNAT3A8MTJ3 354 aa8.61□□□□□ -1.03
HDAC9-227ENST00000523867 KMT5BQ4FZB7 885 aa8.61□□□□□ -1.03
HDAC9-227ENST00000523867 PROSER2Q86WR7 435 aaPredicted RBP8.61□□□□□ -1.03
HDAC9-227ENST00000523867 NUTM1Q86Y26 1132 aa8.61□□□□□ -1.03
HDAC9-227ENST00000523867 FNBP4Q8N3X1 1017 aaPredicted RBP8.61□□□□□ -1.03
HDAC9-227ENST00000523867 USP44Q9H0E7 712 aa8.61□□□□□ -1.03
HDAC9-227ENST00000523867 TTC21AQ8NDW8 1320 aa8.6□□□□□ -1.03
HDAC9-227ENST00000523867 SURF6O75683 361 aaKnown RBP8.6□□□□□ -1.03
HDAC9-227ENST00000523867 BDNFP23560 247 aa8.6□□□□□ -1.03
HDAC9-227ENST00000523867 PDE6BP35913 854 aa8.6□□□□□ -1.03
HDAC9-227ENST00000523867 TPM4P67936 248 aa8.6□□□□□ -1.03
HDAC9-227ENST00000523867 GPS2Q13227 327 aa8.6□□□□□ -1.03
HDAC9-227ENST00000523867 IL25Q9H293 177 aa8.6□□□□□ -1.03
HDAC9-227ENST00000523867 DEF6Q9H4E7 631 aa8.6□□□□□ -1.03
HDAC9-227ENST00000523867 ATG3Q9NT62 314 aa8.6□□□□□ -1.03
HDAC9-227ENST00000523867 SOS1Q07889 1333 aaPredicted RBP8.6□□□□□ -1.03
HDAC9-227ENST00000523867 IGSF1Q8N6C5 1336 aa8.6□□□□□ -1.03
HDAC9-227ENST00000523867 TMEM2Q9UHN6 1383 aa8.6□□□□□ -1.03
HDAC9-227ENST00000523867 RBM47A0AV96 593 aaKnown RBP8.6□□□□□ -1.03
HDAC9-227ENST00000523867 ATP2B1P20020 1258 aa8.6□□□□□ -1.03
HDAC9-227ENST00000523867 RBM6P78332 1123 aaKnown RBP8.6□□□□□ -1.03
HDAC9-227ENST00000523867 TRDNQ13061 729 aa8.6□□□□□ -1.03
HDAC9-227ENST00000523867 SUGP1Q8IWZ8 645 aaKnown RBP8.6□□□□□ -1.03
HDAC9-227ENST00000523867 SSH3Q8TE77 659 aa8.6□□□□□ -1.03
HDAC9-227ENST00000523867 ZNF446Q9NWS9 450 aa8.6□□□□□ -1.03
HDAC9-227ENST00000523867 GOLIM4O00461 696 aa8.59□□□□□ -1.03
HDAC9-227ENST00000523867 TCF3P15923 654 aa8.59□□□□□ -1.03
HDAC9-227ENST00000523867 NBPF9Q3BBW0 867 aa8.59□□□□□ -1.03
HDAC9-227ENST00000523867 C11orf96Q7Z7L8 435 aa8.59□□□□□ -1.03
HDAC9-227ENST00000523867 IQUBQ8NA54 791 aa8.59□□□□□ -1.03
HDAC9-227ENST00000523867 TRERF1Q96PN7 1200 aa8.59□□□□□ -1.03
HDAC9-227ENST00000523867 CALRP27797 417 aaKnown RBP8.59□□□□□ -1.03
HDAC9-227ENST00000523867 CCDC183Q5T5S1 534 aa8.59□□□□□ -1.03
HDAC9-227ENST00000523867 SYT10Q6XYQ8 523 aa8.59□□□□□ -1.03
HDAC9-227ENST00000523867 SND1Q7KZF4 910 aaKnown RBP eCLIP8.59□□□□□ -1.03
HDAC9-227ENST00000523867 PPP1R42Q7Z4L9 355 aa8.59□□□□□ -1.03
HDAC9-227ENST00000523867 NALCNQ8IZF0 1738 aa8.59□□□□□ -1.03
HDAC9-227ENST00000523867 NGDNQ8NEJ9 315 aaKnown RBP8.59□□□□□ -1.03
HDAC9-227ENST00000523867 ERO1AQ96HE7 468 aa8.59□□□□□ -1.03
HDAC9-227ENST00000523867 KCNF1Q9H3M0 494 aa8.59□□□□□ -1.03
HDAC9-227ENST00000523867 ARHGEF10LQ9HCE6 1279 aa8.59□□□□□ -1.03
HDAC9-227ENST00000523867 PYCARDQ9ULZ3 195 aa8.59□□□□□ -1.03
HDAC9-227ENST00000523867 KAT6BQ8WYB5 2073 aa8.59□□□□□ -1.03
HDAC9-227ENST00000523867 XIRP1Q702N8 1843 aaKnown RBP8.59□□□□□ -1.04
HDAC9-227ENST00000523867 SGSM2O43147 1006 aa8.58□□□□□ -1.04
HDAC9-227ENST00000523867 TAF7Q15545 349 aaPredicted RBP8.58□□□□□ -1.04
HDAC9-227ENST00000523867 HDGFL1Q5TGJ6 251 aa8.58□□□□□ -1.04
HDAC9-227ENST00000523867 CNTROBQ8N137 903 aa8.58□□□□□ -1.04
HDAC9-227ENST00000523867 TMEM87AQ8NBN3 555 aa8.58□□□□□ -1.04
HDAC9-227ENST00000523867 RHPN1Q8TCX5 695 aa8.58□□□□□ -1.04
HDAC9-227ENST00000523867 MAGEC2Q9UBF1 373 aaPredicted RBP8.58□□□□□ -1.04
HDAC9-227ENST00000523867 CNPY2Q9Y2B0 182 aa8.58□□□□□ -1.04
HDAC9-227ENST00000523867 ZSCAN21Q9Y5A6 473 aaPredicted RBP8.58□□□□□ -1.04
HDAC9-227ENST00000523867 SNX14Q9Y5W7 946 aa8.58□□□□□ -1.04
HDAC9-227ENST00000523867 TUBGCP6Q96RT7 1819 aa8.58□□□□□ -1.04
HDAC9-227ENST00000523867 SIPA1L2Q9P2F8 1722 aaPredicted RBP8.58□□□□□ -1.04
HDAC9-227ENST00000523867 ADAMTS13Q76LX8 1427 aa8.58□□□□□ -1.04
HDAC9-227ENST00000523867 EXOC5O00471 708 aa8.58□□□□□ -1.04
HDAC9-227ENST00000523867 ATP8B1O43520 1251 aa8.58□□□□□ -1.04
HDAC9-227ENST00000523867 ZSCAN22P10073 491 aaPredicted RBP8.58□□□□□ -1.04
HDAC9-227ENST00000523867 GYS2P54840 703 aa8.58□□□□□ -1.04
HDAC9-227ENST00000523867 SRLQ86TD4 932 aa8.58□□□□□ -1.04
HDAC9-227ENST00000523867 IL17REQ8NFR9 667 aa8.58□□□□□ -1.04
HDAC9-227ENST00000523867 GOLGA5Q8TBA6 731 aa8.58□□□□□ -1.04
HDAC9-227ENST00000523867 PI4K2BQ8TCG2 481 aa8.58□□□□□ -1.04
HDAC9-227ENST00000523867 CXorf56Q9H5V9 222 aa8.58□□□□□ -1.04
HDAC9-227ENST00000523867 LIMCH1Q9UPQ0 1083 aa8.58□□□□□ -1.04
HDAC9-227ENST00000523867 RPAP1Q9BWH6 1393 aaPredicted RBP8.58□□□□□ -1.04
HDAC9-227ENST00000523867 TOPAZ1Q8N9V7 1692 aa8.57□□□□□ -1.04
HDAC9-227ENST00000523867 SRGAP3O43295 1099 aa8.57□□□□□ -1.04
HDAC9-227ENST00000523867 STX6O43752 255 aa8.57□□□□□ -1.04
HDAC9-227ENST00000523867 MAGEA9P43362 315 aa8.57□□□□□ -1.04
HDAC9-227ENST00000523867 AK2P54819 239 aa8.57□□□□□ -1.04
HDAC9-227ENST00000523867 TTC31Q49AM3 519 aaPredicted RBP8.57□□□□□ -1.04
HDAC9-227ENST00000523867 DPH6Q7L8W6 267 aa8.57□□□□□ -1.04
HDAC9-227ENST00000523867 C10orf67Q8IYJ2 551 aa8.57□□□□□ -1.04
HDAC9-227ENST00000523867 NFATC2IPQ8NCF5 419 aa8.57□□□□□ -1.04
HDAC9-227ENST00000523867 PHAXQ9H814 394 aaKnown RBP8.57□□□□□ -1.04
HDAC9-227ENST00000523867 PLSCR2Q9NRY7 297 aa8.57□□□□□ -1.04
HDAC9-227ENST00000523867 BABAM1Q9NWV8 329 aa8.57□□□□□ -1.04
HDAC9-227ENST00000523867 PSD3Q9NYI0 1048 aa8.57□□□□□ -1.04
HDAC9-227ENST00000523867 SMC3Q9UQE7 1217 aa8.57□□□□□ -1.04
HDAC9-227ENST00000523867 CTDP1Q9Y5B0 961 aaPredicted RBP8.57□□□□□ -1.04
HDAC9-227ENST00000523867 PLEKHG2Q9H7P9 1386 aa8.57□□□□□ -1.04
HDAC9-227ENST00000523867 XRN1Q8IZH2 1706 aaKnown RBP8.57□□□□□ -1.04
HDAC9-227ENST00000523867 PXDNLA1KZ92 1463 aa8.57□□□□□ -1.04
HDAC9-227ENST00000523867 TNNT1P13805 278 aa8.57□□□□□ -1.04
HDAC9-227ENST00000523867 KCNA6P17658 529 aa8.57□□□□□ -1.04
HDAC9-227ENST00000523867 SYT1P21579 422 aa8.57□□□□□ -1.04
HDAC9-227ENST00000523867 UBE2HP62256 183 aa8.57□□□□□ -1.04
HDAC9-227ENST00000523867 MAP2K1Q02750 393 aaPredicted RBP8.57□□□□□ -1.04
HDAC9-227ENST00000523867 POLA2Q14181 598 aa8.57□□□□□ -1.04
HDAC9-227ENST00000523867 WDR78Q5VTH9 848 aa8.57□□□□□ -1.04
HDAC9-227ENST00000523867 FBXO18Q8NFZ0 1043 aa8.57□□□□□ -1.04
HDAC9-227ENST00000523867 TTC14Q96N46 770 aa8.57□□□□□ -1.04
HDAC9-227ENST00000523867 CEP89Q96ST8 783 aa8.57□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 12.6 ms