RNA–Protein interactions for RNA: ENST00000520286.5

LSM1-202, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

TSL 1 (best)

Gene LSM1, Length 776 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-202ENST00000520286 SALL4Q9UJQ4 1053 aa11.35□□□□□ -0.59
LSM1-202ENST00000520286 TTF2Q9UNY4 1162 aaKnown RBP11.35□□□□□ -0.59
LSM1-202ENST00000520286 MAPTP10636 758 aaKnown RBP11.34□□□□□ -0.59
LSM1-202ENST00000520286 ATP2B1P20020 1258 aa11.34□□□□□ -0.59
LSM1-202ENST00000520286 UBAP2LQ14157 1087 aaKnown RBP11.34□□□□□ -0.59
LSM1-202ENST00000520286 C3orf58Q8NDZ4 430 aa11.34□□□□□ -0.59
LSM1-202ENST00000520286 STRN4Q9NRL3 753 aa11.34□□□□□ -0.59
LSM1-202ENST00000520286 SOBPA7XYQ1 873 aa11.33□□□□□ -0.6
LSM1-202ENST00000520286 H7C1W4 665 aa11.33□□□□□ -0.6
LSM1-202ENST00000520286 FCGRTP55899 365 aa11.33□□□□□ -0.6
LSM1-202ENST00000520286 PTSQ03393 145 aa11.33□□□□□ -0.6
LSM1-202ENST00000520286 ARID5AQ03989 594 aa11.33□□□□□ -0.6
LSM1-202ENST00000520286 COPRSQ9NQ92 184 aa11.33□□□□□ -0.6
LSM1-202ENST00000520286 GTF3C5Q9Y5Q8 519 aaPredicted RBP11.33□□□□□ -0.6
LSM1-202ENST00000520286 SLC35F4A4IF30 521 aa11.32□□□□□ -0.6
LSM1-202ENST00000520286 NFKB1P19838 968 aa11.32□□□□□ -0.6
LSM1-202ENST00000520286 GRIN2CQ14957 1233 aa11.32□□□□□ -0.6
LSM1-202ENST00000520286 PRPF40BQ6NWY9 871 aaKnown RBP11.32□□□□□ -0.6
LSM1-202ENST00000520286 DHX38Q92620 1227 aaKnown RBP11.32□□□□□ -0.6
LSM1-202ENST00000520286 NOC4LQ9BVI4 516 aaKnown RBP11.32□□□□□ -0.6
LSM1-202ENST00000520286 LIN7BQ9HAP6 207 aa11.32□□□□□ -0.6
LSM1-202ENST00000520286 ATP13A2Q9NQ11 1180 aa11.32□□□□□ -0.6
LSM1-202ENST00000520286 MARK1Q9P0L2 795 aa11.32□□□□□ -0.6
LSM1-202ENST00000520286 BNIP3LO60238 219 aa11.31□□□□□ -0.6
LSM1-202ENST00000520286 PSAPP07602 524 aa11.31□□□□□ -0.6
LSM1-202ENST00000520286 SPEM2Q0P670 501 aa11.31□□□□□ -0.6
LSM1-202ENST00000520286 NCAPG2Q86XI2 1143 aa11.31□□□□□ -0.6
LSM1-202ENST00000520286 VPS37DQ86XT2 251 aa11.31□□□□□ -0.6
LSM1-202ENST00000520286 OXCT2Q9BYC2 517 aaPredicted RBP11.31□□□□□ -0.6
LSM1-202ENST00000520286 TLR7Q9NYK1 1049 aaKnown RBP11.31□□□□□ -0.6
LSM1-202ENST00000520286 GTF2F1P35269 517 aaKnown RBP eCLIP11.3□□□□□ -0.6
LSM1-202ENST00000520286 SOX18P35713 384 aa11.3□□□□□ -0.6
LSM1-202ENST00000520286 HYAL2Q12891 473 aa11.3□□□□□ -0.6
LSM1-202ENST00000520286 DBN1Q16643 649 aa11.3□□□□□ -0.6
LSM1-202ENST00000520286 DNAJC2Q99543 621 aaKnown RBP11.3□□□□□ -0.6
LSM1-202ENST00000520286 EFCC1Q9HA90 598 aa11.3□□□□□ -0.6
LSM1-202ENST00000520286 KBTBD4Q9NVX7 518 aa11.3□□□□□ -0.6
LSM1-202ENST00000520286 NISCHQ9Y2I1 1504 aa11.3□□□□□ -0.6
LSM1-202ENST00000520286 TMEM238LA0A1B0GVL6 79 aa11.29□□□□□ -0.6
LSM1-202ENST00000520286 NRG2O14511 850 aaPredicted RBP11.29□□□□□ -0.6
LSM1-202ENST00000520286 GFRA3O60609 400 aa11.29□□□□□ -0.6
LSM1-202ENST00000520286 KIF4AO95239 1232 aa11.29□□□□□ -0.6
LSM1-202ENST00000520286 XRCC5P13010 732 aaKnown RBP11.29□□□□□ -0.6
LSM1-202ENST00000520286 PAK2Q13177 524 aa11.29□□□□□ -0.6
LSM1-202ENST00000520286 CCDC85BQ15834 202 aaPredicted RBP11.29□□□□□ -0.6
LSM1-202ENST00000520286 COL13A1Q5TAT6 717 aaPredicted RBP11.29□□□□□ -0.6
LSM1-202ENST00000520286 DTHD1Q6ZMT9 781 aa11.29□□□□□ -0.6
LSM1-202ENST00000520286 TRIM22Q8IYM9 498 aa11.29□□□□□ -0.6
LSM1-202ENST00000520286 TCF12Q99081 682 aa11.29□□□□□ -0.6
LSM1-202ENST00000520286 RSRP1Q9BUV0 290 aa11.29□□□□□ -0.6
LSM1-202ENST00000520286 ABCB6Q9NP58 842 aa11.29□□□□□ -0.6
LSM1-202ENST00000520286 NDFIP2Q9NV92 336 aa11.29□□□□□ -0.6
LSM1-202ENST00000520286 PPM1HQ9ULR3 514 aa11.29□□□□□ -0.6
LSM1-202ENST00000520286 AKAP2Q9Y2D5 859 aa11.29□□□□□ -0.6
LSM1-202ENST00000520286 MAP3K6O95382 1288 aa11.28□□□□□ -0.6
LSM1-202ENST00000520286 GJA8P48165 433 aa11.28□□□□□ -0.6
LSM1-202ENST00000520286 PLAURQ03405 335 aa11.28□□□□□ -0.6
LSM1-202ENST00000520286 BHMTQ93088 406 aa11.28□□□□□ -0.6
LSM1-202ENST00000520286 ARMC5Q96C12 935 aa11.28□□□□□ -0.6
LSM1-202ENST00000520286 ABHD17AQ96GS6 310 aa11.28□□□□□ -0.6
LSM1-202ENST00000520286 OSMRQ99650 979 aa11.28□□□□□ -0.6
LSM1-202ENST00000520286 SLC30A3Q99726 388 aa11.28□□□□□ -0.6
LSM1-202ENST00000520286 ZKSCAN3Q9BRR0 538 aa11.28□□□□□ -0.6
LSM1-202ENST00000520286 HCN2Q9UL51 889 aa11.28□□□□□ -0.6
LSM1-202ENST00000520286 ST8SIA5O15466 376 aa11.27□□□□□ -0.61
LSM1-202ENST00000520286 CD33P20138 364 aa11.27□□□□□ -0.61
LSM1-202ENST00000520286 DPH6Q7L8W6 267 aa11.27□□□□□ -0.61
LSM1-202ENST00000520286 RAB44Q7Z6P3 723 aaPredicted RBP11.27□□□□□ -0.61
LSM1-202ENST00000520286 CCNJLQ8IV13 435 aa11.27□□□□□ -0.61
LSM1-202ENST00000520286 CCDC155Q8N6L0 562 aa11.27□□□□□ -0.61
LSM1-202ENST00000520286 CNTNAP3BQ96NU0 1288 aa11.27□□□□□ -0.61
LSM1-202ENST00000520286 CNTNAP3Q9BZ76 1288 aa11.27□□□□□ -0.61
LSM1-202ENST00000520286 AAASQ9NRG9 546 aa11.27□□□□□ -0.61
LSM1-202ENST00000520286 CUEDC1Q9NWM3 386 aaPredicted RBP11.27□□□□□ -0.61
LSM1-202ENST00000520286 HOXD8P13378 290 aaPredicted RBP11.26□□□□□ -0.61
LSM1-202ENST00000520286 ACPPP15309 386 aa11.26□□□□□ -0.61
LSM1-202ENST00000520286 PWP1Q13610 501 aa11.26□□□□□ -0.61
LSM1-202ENST00000520286 DHX32Q7L7V1 743 aaKnown RBP11.26□□□□□ -0.61
LSM1-202ENST00000520286 RELL1Q8IUW5 271 aa11.26□□□□□ -0.61
LSM1-202ENST00000520286 FAM177A1Q8N128 213 aaPredicted RBP11.26□□□□□ -0.61
LSM1-202ENST00000520286 ANKRD24Q8TF21 1146 aa11.26□□□□□ -0.61
LSM1-202ENST00000520286 GPRASP2Q96D09 838 aa11.26□□□□□ -0.61
LSM1-202ENST00000520286 MAP3K10Q02779 954 aa11.25□□□□□ -0.61
LSM1-202ENST00000520286 CEP120Q8N960 986 aa11.25□□□□□ -0.61
LSM1-202ENST00000520286 NSUN5Q96P11 429 aaKnown RBP11.25□□□□□ -0.61
LSM1-202ENST00000520286 TRIM56Q9BRZ2 755 aaKnown RBP11.25□□□□□ -0.61
LSM1-202ENST00000520286 SPON2Q9BUD6 331 aa11.25□□□□□ -0.61
LSM1-202ENST00000520286 ATXN7L1Q9ULK2 861 aaPredicted RBP11.25□□□□□ -0.61
LSM1-202ENST00000520286 FBXO24O75426 580 aa11.24□□□□□ -0.61
LSM1-202ENST00000520286 SV2BQ7L1I2 683 aa11.24□□□□□ -0.61
LSM1-202ENST00000520286 ZNF837Q96EG3 531 aaPredicted RBP11.24□□□□□ -0.61
LSM1-202ENST00000520286 GMCL1Q96IK5 515 aa11.24□□□□□ -0.61
LSM1-202ENST00000520286 ZFYVE1Q9HBF4 777 aa11.24□□□□□ -0.61
LSM1-202ENST00000520286 DZANK1Q9NVP4 752 aa11.24□□□□□ -0.61
LSM1-202ENST00000520286 MINDY4BA8MYZ0 360 aa11.23□□□□□ -0.61
LSM1-202ENST00000520286 F6X3S4 739 aa11.23□□□□□ -0.61
LSM1-202ENST00000520286 TRPA1O75762 1119 aa11.23□□□□□ -0.61
LSM1-202ENST00000520286 ATF4P18848 351 aaPredicted RBP11.23□□□□□ -0.61
LSM1-202ENST00000520286 GBP2P32456 591 aaPredicted RBP11.23□□□□□ -0.61
LSM1-202ENST00000520286 NEUROD1Q13562 356 aa11.23□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 41.6 ms