RNA–Protein interactions for RNA: ENST00000520228.1

SDCBP-208, Transcript of syndecan binding protein, humanhuman

TSL 2

Gene SDCBP, Length 564 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBP-208ENST00000520228 FMR1Q06787 632 aaKnown RBP eCLIP11.36□□□□□ -0.59
SDCBP-208ENST00000520228 OR13H1Q8NG92 308 aa11.36□□□□□ -0.59
SDCBP-208ENST00000520228 TNFRSF25Q93038 417 aa11.36□□□□□ -0.59
SDCBP-208ENST00000520228 NIF3L1Q9GZT8 377 aa11.36□□□□□ -0.59
SDCBP-208ENST00000520228 CHRDQ9H2X0 955 aa11.36□□□□□ -0.59
SDCBP-208ENST00000520228 TLR7Q9NYK1 1049 aaKnown RBP11.36□□□□□ -0.59
SDCBP-208ENST00000520228 CNTN3Q9P232 1028 aa11.36□□□□□ -0.59
SDCBP-208ENST00000520228 FOXD3Q9UJU5 478 aaPredicted RBP11.36□□□□□ -0.59
SDCBP-208ENST00000520228 ADAMTS2O95450 1211 aa11.35□□□□□ -0.59
SDCBP-208ENST00000520228 COL19A1Q14993 1142 aa11.35□□□□□ -0.59
SDCBP-208ENST00000520228 SNX29Q8TEQ0 813 aa11.35□□□□□ -0.59
SDCBP-208ENST00000520228 SYNJ2O15056 1496 aa11.34□□□□□ -0.59
SDCBP-208ENST00000520228 ADH6P28332 368 aa11.34□□□□□ -0.59
SDCBP-208ENST00000520228 SOX18P35713 384 aa11.34□□□□□ -0.59
SDCBP-208ENST00000520228 PLCB3Q01970 1234 aa11.34□□□□□ -0.59
SDCBP-208ENST00000520228 DHX32Q7L7V1 743 aaKnown RBP11.34□□□□□ -0.59
SDCBP-208ENST00000520228 FCHSD1Q86WN1 690 aa11.34□□□□□ -0.59
SDCBP-208ENST00000520228 C1orf127Q8N9H9 656 aa11.34□□□□□ -0.59
SDCBP-208ENST00000520228 RGS22Q8NE09 1264 aa11.34□□□□□ -0.59
SDCBP-208ENST00000520228 ACDQ96AP0 544 aa11.34□□□□□ -0.59
SDCBP-208ENST00000520228 OXCT2Q9BYC2 517 aaPredicted RBP11.34□□□□□ -0.59
SDCBP-208ENST00000520228 ADARB2-AS1A8MUL3 147 aa11.33□□□□□ -0.6
SDCBP-208ENST00000520228 ZBTB42B2RXF5 422 aa11.33□□□□□ -0.6
SDCBP-208ENST00000520228 TTC39BQ5VTQ0 682 aaPredicted RBP11.33□□□□□ -0.6
SDCBP-208ENST00000520228 GGA1Q9UJY5 639 aa11.33□□□□□ -0.6
SDCBP-208ENST00000520228 ABCA5Q8WWZ7 1642 aa11.33□□□□□ -0.6
SDCBP-208ENST00000520228 NEURL1BA8MQ27 555 aa11.32□□□□□ -0.6
SDCBP-208ENST00000520228 CYP2E1P05181 493 aaPredicted RBP11.32□□□□□ -0.6
SDCBP-208ENST00000520228 NEFLP07196 543 aa11.32□□□□□ -0.6
SDCBP-208ENST00000520228 ORC1Q13415 861 aa11.32□□□□□ -0.6
SDCBP-208ENST00000520228 TRPM4Q8TD43 1214 aa11.32□□□□□ -0.6
SDCBP-208ENST00000520228 ZFYVE28Q9HCC9 887 aa11.32□□□□□ -0.6
SDCBP-208ENST00000520228 GDF2Q9UK05 429 aaPredicted RBP11.32□□□□□ -0.6
SDCBP-208ENST00000520228 KIF27Q86VH2 1401 aa11.32□□□□□ -0.6
SDCBP-208ENST00000520228 P4HBP07237 508 aaKnown RBP11.31□□□□□ -0.6
SDCBP-208ENST00000520228 NRLP54845 237 aa11.31□□□□□ -0.6
SDCBP-208ENST00000520228 SLCO4C1Q6ZQN7 724 aa11.31□□□□□ -0.6
SDCBP-208ENST00000520228 C1orf229Q6ZS94 237 aaPredicted RBP11.31□□□□□ -0.6
SDCBP-208ENST00000520228 GOLGA6L1Q8N7Z2 621 aa11.31□□□□□ -0.6
SDCBP-208ENST00000520228 FHAD1B1AJZ9 1412 aa11.31□□□□□ -0.6
SDCBP-208ENST00000520228 WIPF1O43516 503 aa11.3□□□□□ -0.6
SDCBP-208ENST00000520228 PHACTR2O75167 634 aa11.3□□□□□ -0.6
SDCBP-208ENST00000520228 PSAPP07602 524 aa11.3□□□□□ -0.6
SDCBP-208ENST00000520228 PLAURQ03405 335 aa11.3□□□□□ -0.6
SDCBP-208ENST00000520228 CSRNP1Q96S65 589 aa11.3□□□□□ -0.6
SDCBP-208ENST00000520228 DNAJC25Q9H1X3 360 aa11.3□□□□□ -0.6
SDCBP-208ENST00000520228 DNAJB12Q9NXW2 375 aaKnown RBP11.3□□□□□ -0.6
SDCBP-208ENST00000520228 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP11.3□□□□□ -0.6
SDCBP-208ENST00000520228 ERICH3Q5RHP9 1530 aa11.3□□□□□ -0.6
SDCBP-208ENST00000520228 EIF1AYO14602 144 aaKnown RBP11.29□□□□□ -0.6
SDCBP-208ENST00000520228 KIF4AO95239 1232 aa11.29□□□□□ -0.6
SDCBP-208ENST00000520228 GPLD1P80108 840 aa11.29□□□□□ -0.6
SDCBP-208ENST00000520228 ENOX2Q16206 610 aaKnown RBP11.29□□□□□ -0.6
SDCBP-208ENST00000520228 COL13A1Q5TAT6 717 aaPredicted RBP11.29□□□□□ -0.6
SDCBP-208ENST00000520228 FBXO33Q7Z6M2 555 aa11.29□□□□□ -0.6
SDCBP-208ENST00000520228 PMEPA1Q969W9 287 aa11.29□□□□□ -0.6
SDCBP-208ENST00000520228 EREGO14944 169 aa11.28□□□□□ -0.6
SDCBP-208ENST00000520228 CPNE3O75131 537 aaKnown RBP11.28□□□□□ -0.6
SDCBP-208ENST00000520228 LRRC4BQ9NT99 713 aa11.28□□□□□ -0.6
SDCBP-208ENST00000520228 SALL4Q9UJQ4 1053 aa11.28□□□□□ -0.6
SDCBP-208ENST00000520228 EPXP11678 715 aa11.27□□□□□ -0.61
SDCBP-208ENST00000520228 CES1P23141 567 aa11.27□□□□□ -0.61
SDCBP-208ENST00000520228 USPL1Q5W0Q7 1092 aa11.27□□□□□ -0.61
SDCBP-208ENST00000520228 UBE2OQ9C0C9 1292 aaKnown RBP11.27□□□□□ -0.61
SDCBP-208ENST00000520228 GRIN2AQ12879 1464 aa11.26□□□□□ -0.61
SDCBP-208ENST00000520228 ELOA3CA0A087WX78 387 aaPredicted RBP11.26□□□□□ -0.61
SDCBP-208ENST00000520228 ELOA3DA6NLF2 546 aaPredicted RBP11.26□□□□□ -0.61
SDCBP-208ENST00000520228 OIP5O43482 229 aa11.26□□□□□ -0.61
SDCBP-208ENST00000520228 ADH7P40394 386 aa11.26□□□□□ -0.61
SDCBP-208ENST00000520228 ELOA3BQ3SY89 546 aa11.26□□□□□ -0.61
SDCBP-208ENST00000520228 LYPD4Q6UWN0 246 aa11.26□□□□□ -0.61
SDCBP-208ENST00000520228 ELOA3Q8NG57 546 aa11.26□□□□□ -0.61
SDCBP-208ENST00000520228 AMOTL2Q9Y2J4 779 aa11.26□□□□□ -0.61
SDCBP-208ENST00000520228 PBRM1Q86U86 1689 aa11.25□□□□□ -0.61
SDCBP-208ENST00000520228 PHF20L1A8MW92 1017 aa11.25□□□□□ -0.61
SDCBP-208ENST00000520228 BCRP11274 1271 aa11.25□□□□□ -0.61
SDCBP-208ENST00000520228 PCSK7Q16549 785 aa11.25□□□□□ -0.61
SDCBP-208ENST00000520228 GALNT12Q8IXK2 581 aa11.25□□□□□ -0.61
SDCBP-208ENST00000520228 WHAMMQ8TF30 809 aa11.25□□□□□ -0.61
SDCBP-208ENST00000520228 IGFLR1Q9H665 355 aa11.25□□□□□ -0.61
SDCBP-208ENST00000520228 KANSL3Q9P2N6 904 aa11.25□□□□□ -0.61
SDCBP-208ENST00000520228 SLC6A14Q9UN76 642 aa11.25□□□□□ -0.61
SDCBP-208ENST00000520228 CHD1O14646 1710 aa11.25□□□□□ -0.61
SDCBP-208ENST00000520228 LOC102724428A0A0B4J2F2 783 aa11.24□□□□□ -0.61
SDCBP-208ENST00000520228 PNMA6FA0A0J9YX94 578 aa11.24□□□□□ -0.61
SDCBP-208ENST00000520228 CELA2BP08218 269 aaPredicted RBP11.24□□□□□ -0.61
SDCBP-208ENST00000520228 LORP23490 312 aaPredicted RBP11.24□□□□□ -0.61
SDCBP-208ENST00000520228 MAPK8P45983 427 aa11.24□□□□□ -0.61
SDCBP-208ENST00000520228 SIK1P57059 783 aa11.24□□□□□ -0.61
SDCBP-208ENST00000520228 HYAL2Q12891 473 aa11.24□□□□□ -0.61
SDCBP-208ENST00000520228 EDARADDQ8WWZ3 215 aa11.24□□□□□ -0.61
SDCBP-208ENST00000520228 NSUN5Q96P11 429 aaKnown RBP11.24□□□□□ -0.61
SDCBP-208ENST00000520228 NAGPAQ9UK23 515 aa11.24□□□□□ -0.61
SDCBP-208ENST00000520228 ADAMTS12P58397 1594 aa11.24□□□□□ -0.61
SDCBP-208ENST00000520228 MLLT1Q03111 559 aaPredicted RBP11.23□□□□□ -0.61
SDCBP-208ENST00000520228 EAPPQ56P03 285 aaPredicted RBP11.23□□□□□ -0.61
SDCBP-208ENST00000520228 CEP120Q8N960 986 aa11.23□□□□□ -0.61
SDCBP-208ENST00000520228 GALNT6Q8NCL4 622 aa11.23□□□□□ -0.61
SDCBP-208ENST00000520228 SETDB2Q96T68 719 aa11.23□□□□□ -0.61
SDCBP-208ENST00000520228 WWC3Q9ULE0 1092 aa11.23□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms