RNA–Protein interactions for RNA: ENST00000514142.5

PDLIM3-209, Transcript of PDZ and LIM domain 3, human

TSL 1 (best)

Gene PDLIM3, Length 5,137 nt, Biotype retained intron.

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PDLIM3-209	ENST00000514142	ZNF287	Q9HBT7	754 aa		11.8	□□□□□ -0.52
PDLIM3-209	ENST00000514142	IL16	Q14005	1332 aa		11.8	□□□□□ -0.52
PDLIM3-209	ENST00000514142	RPGRIP1L	Q68CZ1	1315 aa		11.8	□□□□□ -0.52
PDLIM3-209	ENST00000514142	TUBB4B	P68371	445 aa		11.8	□□□□□ -0.52
PDLIM3-209	ENST00000514142	KRI1	Q8N9T8	703 aa	Known RBP	11.8	□□□□□ -0.52
PDLIM3-209	ENST00000514142	DHX58	Q96C10	678 aa		11.8	□□□□□ -0.52
PDLIM3-209	ENST00000514142	CCDC42	Q96M95	316 aa		11.8	□□□□□ -0.52
PDLIM3-209	ENST00000514142	MMRN2	Q9H8L6	949 aa		11.8	□□□□□ -0.52
PDLIM3-209	ENST00000514142	ANXA1	P04083	346 aa		11.79	□□□□□ -0.52
PDLIM3-209	ENST00000514142	ARID5A	Q03989	594 aa		11.79	□□□□□ -0.52
PDLIM3-209	ENST00000514142	PPM1E	Q8WY54	764 aa		11.79	□□□□□ -0.52
PDLIM3-209	ENST00000514142	JARID2	Q92833	1246 aa	Predicted RBP	11.79	□□□□□ -0.52
PDLIM3-209	ENST00000514142	USP26	Q9BXU7	913 aa		11.79	□□□□□ -0.52
PDLIM3-209	ENST00000514142	IKBKG	Q9Y6K9	419 aa		11.79	□□□□□ -0.52
PDLIM3-209	ENST00000514142	FAM160A1	Q05DH4	1040 aa		11.79	□□□□□ -0.52
PDLIM3-209	ENST00000514142	CFAP58	Q5T655	872 aa		11.79	□□□□□ -0.52
PDLIM3-209	ENST00000514142	TRMT1L	Q7Z2T5	733 aa	Known RBP	11.79	□□□□□ -0.52
PDLIM3-209	ENST00000514142	AFAP1L1	Q8TED9	768 aa		11.79	□□□□□ -0.52
PDLIM3-209	ENST00000514142	BAG1	Q99933	345 aa	Predicted RBP	11.79	□□□□□ -0.52
PDLIM3-209	ENST00000514142	ZC3H6	P61129	1189 aa	Known RBP	11.79	□□□□□ -0.52
PDLIM3-209	ENST00000514142	MFSD6	Q6ZSS7	791 aa		11.79	□□□□□ -0.52
PDLIM3-209	ENST00000514142	VAT1L	Q9HCJ6	419 aa		11.79	□□□□□ -0.52
PDLIM3-209	ENST00000514142	BCL2L12	Q9HB09	334 aa		11.79	□□□□□ -0.52
PDLIM3-209	ENST00000514142		A0A1B0GUA9	196 aa		11.78	□□□□□ -0.52
PDLIM3-209	ENST00000514142	NDUFAB1	O14561	156 aa		11.78	□□□□□ -0.52
PDLIM3-209	ENST00000514142	ZBTB43	O43298	467 aa		11.78	□□□□□ -0.52
PDLIM3-209	ENST00000514142	TUBB	P07437	444 aa		11.78	□□□□□ -0.52
PDLIM3-209	ENST00000514142	KRT13	P13646	458 aa		11.78	□□□□□ -0.52
PDLIM3-209	ENST00000514142	KIF5B	P33176	963 aa		11.78	□□□□□ -0.52
PDLIM3-209	ENST00000514142	STAT6	P42226	847 aa		11.78	□□□□□ -0.52
PDLIM3-209	ENST00000514142	CAVIN4	Q5BKX8	364 aa		11.78	□□□□□ -0.52
PDLIM3-209	ENST00000514142	PPP1R9B	Q96SB3	815 aa		11.78	□□□□□ -0.52
PDLIM3-209	ENST00000514142	ZNF445	P59923	1031 aa		11.78	□□□□□ -0.52
PDLIM3-209	ENST00000514142	ZBTB16	Q05516	673 aa		11.78	□□□□□ -0.52
PDLIM3-209	ENST00000514142	RAPGEF3	O95398	923 aa		11.78	□□□□□ -0.52
PDLIM3-209	ENST00000514142	TRO	Q12816	1431 aa	Predicted RBP	11.78	□□□□□ -0.52
PDLIM3-209	ENST00000514142	GRIN2B	Q13224	1484 aa		11.78	□□□□□ -0.52
PDLIM3-209	ENST00000514142	ATP5J2-PTCD1	G3V325	749 aa		11.78	□□□□□ -0.52
PDLIM3-209	ENST00000514142	PSMA7	O14818	248 aa		11.78	□□□□□ -0.52
PDLIM3-209	ENST00000514142	INPP5B	P32019	993 aa		11.78	□□□□□ -0.52
PDLIM3-209	ENST00000514142	UBXN1	Q04323	297 aa		11.78	□□□□□ -0.52
PDLIM3-209	ENST00000514142	PLEKHM2	Q8IWE5	1019 aa		11.78	□□□□□ -0.52
PDLIM3-209	ENST00000514142	CPA1	P15085	419 aa		11.77	□□□□□ -0.52
PDLIM3-209	ENST00000514142	UBE3B	Q7Z3V4	1068 aa		11.77	□□□□□ -0.52
PDLIM3-209	ENST00000514142	WDHD1	O75717	1129 aa	Predicted RBP	11.77	□□□□□ -0.52
PDLIM3-209	ENST00000514142		A0A1B0GVL5	298 aa		11.77	□□□□□ -0.53
PDLIM3-209	ENST00000514142	HPD	P32754	393 aa	Predicted RBP	11.77	□□□□□ -0.53
PDLIM3-209	ENST00000514142	GRIPAP1	Q4V328	841 aa		11.77	□□□□□ -0.53
PDLIM3-209	ENST00000514142	MRPL50	Q8N5N7	158 aa	Known RBP	11.77	□□□□□ -0.53
PDLIM3-209	ENST00000514142	SAMD15	Q9P1V8	674 aa		11.77	□□□□□ -0.53
PDLIM3-209	ENST00000514142	NMI	Q13287	307 aa	Predicted RBP	11.77	□□□□□ -0.53
PDLIM3-209	ENST00000514142	TNIP1	Q15025	636 aa		11.77	□□□□□ -0.53
PDLIM3-209	ENST00000514142	CHST3	Q7LGC8	479 aa		11.77	□□□□□ -0.53
PDLIM3-209	ENST00000514142	DZIP1	Q86YF9	867 aa	Known RBP	11.77	□□□□□ -0.53
PDLIM3-209	ENST00000514142	IQCG	Q9H095	443 aa	Known RBP	11.77	□□□□□ -0.53
PDLIM3-209	ENST00000514142	RASAL2	Q9UJF2	1139 aa		11.77	□□□□□ -0.53
PDLIM3-209	ENST00000514142	SLC5A1	P13866	664 aa		11.76	□□□□□ -0.53
PDLIM3-209	ENST00000514142	FBLN1	P23142	703 aa		11.76	□□□□□ -0.53
PDLIM3-209	ENST00000514142	ARHGAP30	Q7Z6I6	1101 aa	Predicted RBP	11.76	□□□□□ -0.53
PDLIM3-209	ENST00000514142	CCDC77	Q9BR77	488 aa		11.76	□□□□□ -0.53
PDLIM3-209	ENST00000514142	SYNJ2	O15056	1496 aa		11.76	□□□□□ -0.53
PDLIM3-209	ENST00000514142	CCDC122	Q5T0U0	273 aa		11.76	□□□□□ -0.53
PDLIM3-209	ENST00000514142	DAAM2	Q86T65	1068 aa		11.76	□□□□□ -0.53
PDLIM3-209	ENST00000514142	TTC14	Q96N46	770 aa		11.76	□□□□□ -0.53
PDLIM3-209	ENST00000514142	DCTPP1	Q9H773	170 aa		11.76	□□□□□ -0.53
PDLIM3-209	ENST00000514142	OAS2	P29728	719 aa	Known RBP	11.76	□□□□□ -0.53
PDLIM3-209	ENST00000514142	CLNS1A	P54105	237 aa	Known RBP	11.76	□□□□□ -0.53
PDLIM3-209	ENST00000514142	CHMP4BP1	P59074	171 aa		11.76	□□□□□ -0.53
PDLIM3-209	ENST00000514142	C8orf58	Q8NAV2	365 aa		11.76	□□□□□ -0.53
PDLIM3-209	ENST00000514142	STMN4	Q9H169	189 aa	Predicted RBP	11.76	□□□□□ -0.53
PDLIM3-209	ENST00000514142	EFCAB5	A4FU69	1503 aa		11.76	□□□□□ -0.53
PDLIM3-209	ENST00000514142	STARD3NL	O95772	234 aa		11.76	□□□□□ -0.53
PDLIM3-209	ENST00000514142	NBPF7	P0C2Y1	421 aa	Predicted RBP	11.76	□□□□□ -0.53
PDLIM3-209	ENST00000514142	MYL5	Q02045	173 aa		11.76	□□□□□ -0.53
PDLIM3-209	ENST00000514142	WTAP	Q15007	396 aa		11.76	□□□□□ -0.53
PDLIM3-209	ENST00000514142	SLC4A8	Q2Y0W8	1093 aa		11.76	□□□□□ -0.53
PDLIM3-209	ENST00000514142	FAM173B	Q6P4H8	233 aa		11.76	□□□□□ -0.53
PDLIM3-209	ENST00000514142	B4GALNT4	Q76KP1	1039 aa		11.76	□□□□□ -0.53
PDLIM3-209	ENST00000514142	ZBTB3	Q9H5J0	574 aa		11.76	□□□□□ -0.53
PDLIM3-209	ENST00000514142	TSPY2	A6NKD2	308 aa		11.75	□□□□□ -0.53
PDLIM3-209	ENST00000514142	ZNF75D	P51815	510 aa		11.75	□□□□□ -0.53
PDLIM3-209	ENST00000514142	ATP8B2	P98198	1209 aa		11.75	□□□□□ -0.53
PDLIM3-209	ENST00000514142	PPARD	Q03181	441 aa		11.75	□□□□□ -0.53
PDLIM3-209	ENST00000514142	APOBR	Q0VD83	1088 aa		11.75	□□□□□ -0.53
PDLIM3-209	ENST00000514142	SYCP3	Q8IZU3	236 aa		11.75	□□□□□ -0.53
PDLIM3-209	ENST00000514142	ZBTB40	Q9NUA8	1239 aa		11.75	□□□□□ -0.53
PDLIM3-209	ENST00000514142	LUC7L2	Q9Y383	392 aa	Known RBP	11.75	□□□□□ -0.53
PDLIM3-209	ENST00000514142	ADGRF5	Q8IZF2	1346 aa		11.75	□□□□□ -0.53
PDLIM3-209	ENST00000514142	PIK3R4	Q99570	1358 aa		11.75	□□□□□ -0.53
PDLIM3-209	ENST00000514142	ASIC1	P78348	528 aa		11.75	□□□□□ -0.53
PDLIM3-209	ENST00000514142	CCDC97	Q96F63	343 aa	Predicted RBP	11.75	□□□□□ -0.53
PDLIM3-209	ENST00000514142	KCNK9	Q9NPC2	374 aa		11.75	□□□□□ -0.53
PDLIM3-209	ENST00000514142	CPSF2	Q9P2I0	782 aa	Known RBP	11.75	□□□□□ -0.53
PDLIM3-209	ENST00000514142	PTPDC1	A2A3K4	754 aa		11.75	□□□□□ -0.53
PDLIM3-209	ENST00000514142	AKR1B15	C9JRZ8	316 aa	Predicted RBP	11.75	□□□□□ -0.53
PDLIM3-209	ENST00000514142	MCMDC2	Q4G0Z9	681 aa		11.75	□□□□□ -0.53
PDLIM3-209	ENST00000514142	RGS22	Q8NE09	1264 aa		11.75	□□□□□ -0.53
PDLIM3-209	ENST00000514142	PUS7	Q96PZ0	661 aa	Known RBP	11.75	□□□□□ -0.53
PDLIM3-209	ENST00000514142	SMC6	Q96SB8	1091 aa		11.75	□□□□□ -0.53
PDLIM3-209	ENST00000514142	PLVAP	Q9BX97	442 aa		11.75	□□□□□ -0.53

Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms