RNA–Protein interactions for RNA: ENST00000514096.5

LIMCH1-219, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 3,543 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-219ENST00000514096 C20orf194Q5TEA3 1177 aa9.76□□□□□ -0.85
LIMCH1-219ENST00000514096 KIAA0825Q8IV33 1275 aa9.76□□□□□ -0.85
LIMCH1-219ENST00000514096 PXDNLA1KZ92 1463 aa9.76□□□□□ -0.85
LIMCH1-219ENST00000514096 PDE8AO60658 829 aa9.76□□□□□ -0.85
LIMCH1-219ENST00000514096 RARSP54136 660 aaKnown RBP9.76□□□□□ -0.85
LIMCH1-219ENST00000514096 MKRN3Q13064 507 aaKnown RBP9.76□□□□□ -0.85
LIMCH1-219ENST00000514096 METTL24Q5JXM2 366 aa9.76□□□□□ -0.85
LIMCH1-219ENST00000514096 SAMD7Q7Z3H4 446 aa9.76□□□□□ -0.85
LIMCH1-219ENST00000514096 TMEM57Q8N5G2 664 aa9.76□□□□□ -0.85
LIMCH1-219ENST00000514096 MRPL50Q8N5N7 158 aaKnown RBP9.76□□□□□ -0.85
LIMCH1-219ENST00000514096 CCDC191Q8NCU4 936 aa9.76□□□□□ -0.85
LIMCH1-219ENST00000514096 ANKRD18BA2A2Z9 1011 aa9.76□□□□□ -0.85
LIMCH1-219ENST00000514096 LRP10Q7Z4F1 713 aa9.76□□□□□ -0.85
LIMCH1-219ENST00000514096 CERS3Q8IU89 383 aa9.76□□□□□ -0.85
LIMCH1-219ENST00000514096 LINS1Q8NG48 757 aa9.76□□□□□ -0.85
LIMCH1-219ENST00000514096 ADCY9O60503 1353 aa9.75□□□□□ -0.85
LIMCH1-219ENST00000514096 EPS15P42566 896 aa9.75□□□□□ -0.85
LIMCH1-219ENST00000514096 CTSWP56202 376 aa9.75□□□□□ -0.85
LIMCH1-219ENST00000514096 LRRC24Q50LG9 513 aa9.75□□□□□ -0.85
LIMCH1-219ENST00000514096 TXNRD3Q86VQ6 643 aa9.75□□□□□ -0.85
LIMCH1-219ENST00000514096 N4BP2Q86UW6 1770 aaPredicted RBP9.75□□□□□ -0.85
LIMCH1-219ENST00000514096 SRGAP3O43295 1099 aa9.75□□□□□ -0.85
LIMCH1-219ENST00000514096 GYG1P46976 350 aa9.75□□□□□ -0.85
LIMCH1-219ENST00000514096 ATP10DQ9P241 1426 aa9.75□□□□□ -0.85
LIMCH1-219ENST00000514096 CENPFP49454 3210 aa9.75□□□□□ -0.85
LIMCH1-219ENST00000514096 TRIM27P14373 513 aa9.74□□□□□ -0.85
LIMCH1-219ENST00000514096 SCNN1DP51172 638 aa9.74□□□□□ -0.85
LIMCH1-219ENST00000514096 TTLL12Q14166 644 aaPredicted RBP9.74□□□□□ -0.85
LIMCH1-219ENST00000514096 CCDC27Q2M243 656 aa9.74□□□□□ -0.85
LIMCH1-219ENST00000514096 TTLL11Q8NHH1 800 aa9.74□□□□□ -0.85
LIMCH1-219ENST00000514096 ISCA1Q9BUE6 129 aa9.74□□□□□ -0.85
LIMCH1-219ENST00000514096 MKRN1Q9UHC7 482 aaKnown RBP9.74□□□□□ -0.85
LIMCH1-219ENST00000514096 RCAN3Q9UKA8 241 aa9.74□□□□□ -0.85
LIMCH1-219ENST00000514096 IARSP41252 1262 aaKnown RBP9.74□□□□□ -0.85
LIMCH1-219ENST00000514096 GTF2IP78347 998 aa9.74□□□□□ -0.85
LIMCH1-219ENST00000514096 CDC5LQ99459 802 aaKnown RBP9.74□□□□□ -0.85
LIMCH1-219ENST00000514096 FZD1Q9UP38 647 aa9.74□□□□□ -0.85
LIMCH1-219ENST00000514096 LRP5O75197 1615 aa9.74□□□□□ -0.85
LIMCH1-219ENST00000514096 ZNF541Q9H0D2 1346 aa9.74□□□□□ -0.85
LIMCH1-219ENST00000514096 RLBP1P12271 317 aa9.74□□□□□ -0.85
LIMCH1-219ENST00000514096 LMOD1P29536 600 aaPredicted RBP9.74□□□□□ -0.85
LIMCH1-219ENST00000514096 GRAPQ13588 217 aa9.74□□□□□ -0.85
LIMCH1-219ENST00000514096 GRAPLQ8TC17 118 aaPredicted RBP9.74□□□□□ -0.85
LIMCH1-219ENST00000514096 SNRKQ9NRH2 765 aa9.74□□□□□ -0.85
LIMCH1-219ENST00000514096 POLLQ9UGP5 575 aa9.74□□□□□ -0.85
LIMCH1-219ENST00000514096 GGA1Q9UJY5 639 aa9.74□□□□□ -0.85
LIMCH1-219ENST00000514096 NDUFB9Q9Y6M9 179 aa9.74□□□□□ -0.85
LIMCH1-219ENST00000514096 BEND3Q5T5X7 828 aa9.73□□□□□ -0.85
LIMCH1-219ENST00000514096 ABCF2Q9UG63 623 aa9.73□□□□□ -0.85
LIMCH1-219ENST00000514096 ZKSCAN2Q63HK3 967 aa9.73□□□□□ -0.85
LIMCH1-219ENST00000514096 B4GALNT3Q6L9W6 998 aa9.73□□□□□ -0.85
LIMCH1-219ENST00000514096 IL1RAPL2Q9NP60 686 aa9.73□□□□□ -0.85
LIMCH1-219ENST00000514096 UBR3Q6ZT12 1888 aa9.73□□□□□ -0.85
LIMCH1-219ENST00000514096 HOXB7P09629 217 aa9.73□□□□□ -0.85
LIMCH1-219ENST00000514096 HSP90B1P14625 803 aaKnown RBP9.73□□□□□ -0.85
LIMCH1-219ENST00000514096 VEZTQ9HBM0 779 aa9.73□□□□□ -0.85
LIMCH1-219ENST00000514096 ABT1Q9ULW3 272 aaKnown RBP9.73□□□□□ -0.85
LIMCH1-219ENST00000514096 EXOC6BQ9Y2D4 811 aa9.73□□□□□ -0.85
LIMCH1-219ENST00000514096 PCCAP05165 728 aaPredicted RBP9.72□□□□□ -0.85
LIMCH1-219ENST00000514096 TIMM10P62072 90 aa9.72□□□□□ -0.85
LIMCH1-219ENST00000514096 CHMP4CQ96CF2 233 aa9.72□□□□□ -0.85
LIMCH1-219ENST00000514096 BABAM1Q9NWV8 329 aa9.72□□□□□ -0.85
LIMCH1-219ENST00000514096 IPO8O15397 1037 aaKnown RBP9.72□□□□□ -0.85
LIMCH1-219ENST00000514096 CHRNDQ07001 517 aa9.72□□□□□ -0.85
LIMCH1-219ENST00000514096 TUBGCP6Q96RT7 1819 aa9.72□□□□□ -0.85
LIMCH1-219ENST00000514096 ERBB4Q15303 1308 aa9.72□□□□□ -0.85
LIMCH1-219ENST00000514096 RREB1Q92766 1687 aa9.72□□□□□ -0.85
LIMCH1-219ENST00000514096 TRAF5O00463 557 aa9.72□□□□□ -0.85
LIMCH1-219ENST00000514096 SURF6O75683 361 aaKnown RBP9.72□□□□□ -0.85
LIMCH1-219ENST00000514096 TAF1LQ8IZX4 1826 aa9.71□□□□□ -0.85
LIMCH1-219ENST00000514096 TAF1P21675 1872 aa9.71□□□□□ -0.85
LIMCH1-219ENST00000514096 LY75O60449 1722 aa9.71□□□□□ -0.85
LIMCH1-219ENST00000514096 CLRN2A0PK11 232 aa9.71□□□□□ -0.85
LIMCH1-219ENST00000514096 CAPN15O75808 1086 aa9.71□□□□□ -0.85
LIMCH1-219ENST00000514096 CXCL9Q07325 125 aa9.71□□□□□ -0.85
LIMCH1-219ENST00000514096 RTKN2Q8IZC4 609 aa9.71□□□□□ -0.85
LIMCH1-219ENST00000514096 KDM2BQ8NHM5 1336 aa9.71□□□□□ -0.85
LIMCH1-219ENST00000514096 SASH1O94885 1247 aa9.71□□□□□ -0.86
LIMCH1-219ENST00000514096 VEGFAP15692 232 aaPredicted RBP9.71□□□□□ -0.86
LIMCH1-219ENST00000514096 GMPSP49915 693 aaPredicted RBP9.71□□□□□ -0.86
LIMCH1-219ENST00000514096 STYK1Q6J9G0 422 aa9.71□□□□□ -0.86
LIMCH1-219ENST00000514096 ATF7IPQ6VMQ6 1270 aa9.71□□□□□ -0.86
LIMCH1-219ENST00000514096 DZIP1LQ8IYY4 767 aaKnown RBP9.71□□□□□ -0.86
LIMCH1-219ENST00000514096 STK11IPQ8N1F8 1099 aa9.71□□□□□ -0.86
LIMCH1-219ENST00000514096 USP44Q9H0E7 712 aa9.71□□□□□ -0.86
LIMCH1-219ENST00000514096 EGFRP00533 1210 aa9.7□□□□□ -0.86
LIMCH1-219ENST00000514096 CACNB3P54284 484 aa9.7□□□□□ -0.86
LIMCH1-219ENST00000514096 API5Q9BZZ5 524 aaKnown RBP9.7□□□□□ -0.86
LIMCH1-219ENST00000514096 MINPP1Q9UNW1 487 aa9.7□□□□□ -0.86
LIMCH1-219ENST00000514096 ATP6V0A2Q9Y487 856 aa9.7□□□□□ -0.86
LIMCH1-219ENST00000514096 IL16Q14005 1332 aa9.7□□□□□ -0.86
LIMCH1-219ENST00000514096 ECE2O60344 883 aa9.7□□□□□ -0.86
LIMCH1-219ENST00000514096 BBOX1O75936 387 aa9.7□□□□□ -0.86
LIMCH1-219ENST00000514096 FKBP4Q02790 459 aaKnown RBP eCLIP9.7□□□□□ -0.86
LIMCH1-219ENST00000514096 PSMD14O00487 310 aa9.7□□□□□ -0.86
LIMCH1-219ENST00000514096 GSE1Q14687 1217 aa9.7□□□□□ -0.86
LIMCH1-219ENST00000514096 TBC1D16Q8TBP0 767 aa9.7□□□□□ -0.86
LIMCH1-219ENST00000514096 TSKSQ9UJT2 592 aa9.7□□□□□ -0.86
LIMCH1-219ENST00000514096 PCDHAC2Q9Y5I4 1007 aa9.7□□□□□ -0.86
LIMCH1-219ENST00000514096 BCAMP50895 628 aa9.69□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 34.3 ms