RNA–Protein interactions for RNA: ENST00000512656.1

USP46-208, Transcript of ubiquitin specific peptidase 46, humanhuman

TSL 3

Gene USP46, Length 467 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP46-208ENST00000512656 NARFQ9UHQ1 456 aa9.62□□□□□ -0.87
USP46-208ENST00000512656 COL15A1P39059 1388 aa9.62□□□□□ -0.87
USP46-208ENST00000512656 POLRMTO00411 1230 aaKnown RBP9.61□□□□□ -0.87
USP46-208ENST00000512656 HSPA6P17066 643 aa9.61□□□□□ -0.87
USP46-208ENST00000512656 KCNA3P22001 575 aa9.61□□□□□ -0.87
USP46-208ENST00000512656 MMP16P51512 607 aa9.61□□□□□ -0.87
USP46-208ENST00000512656 CNGB1Q14028 1251 aaPredicted RBP9.61□□□□□ -0.87
USP46-208ENST00000512656 NPM2Q86SE8 214 aaKnown RBP9.61□□□□□ -0.87
USP46-208ENST00000512656 NUDCQ9Y266 331 aa9.61□□□□□ -0.87
USP46-208ENST00000512656 TJP1Q07157 1748 aa9.61□□□□□ -0.87
USP46-208ENST00000512656 PKDCCQ504Y2 493 aa9.6□□□□□ -0.87
USP46-208ENST00000512656 C9orf131Q5VYM1 1079 aa9.6□□□□□ -0.87
USP46-208ENST00000512656 KRI1Q8N9T8 703 aaKnown RBP9.6□□□□□ -0.87
USP46-208ENST00000512656 USB1Q9BQ65 265 aaKnown RBP9.6□□□□□ -0.87
USP46-208ENST00000512656 ZBTB1Q9Y2K1 713 aa9.6□□□□□ -0.87
USP46-208ENST00000512656 N4BP2Q86UW6 1770 aaPredicted RBP9.6□□□□□ -0.87
USP46-208ENST00000512656 HOXA2O43364 376 aa9.59□□□□□ -0.87
USP46-208ENST00000512656 ZMYND10O75800 440 aa9.59□□□□□ -0.87
USP46-208ENST00000512656 TOMM70O94826 608 aa9.59□□□□□ -0.87
USP46-208ENST00000512656 SERPINB2P05120 415 aa9.59□□□□□ -0.87
USP46-208ENST00000512656 CANXP27824 592 aaKnown RBP9.59□□□□□ -0.87
USP46-208ENST00000512656 CHRNA5P30532 468 aa9.59□□□□□ -0.87
USP46-208ENST00000512656 NFIXQ14938 502 aa9.59□□□□□ -0.87
USP46-208ENST00000512656 ZNF790Q6PG37 636 aa9.59□□□□□ -0.87
USP46-208ENST00000512656 FMNL2Q96PY5 1086 aa9.59□□□□□ -0.87
USP46-208ENST00000512656 KCPQ6ZWJ8 1503 aa9.59□□□□□ -0.87
USP46-208ENST00000512656 KIAA1551Q9HCM1 1747 aa9.59□□□□□ -0.87
USP46-208ENST00000512656 COL3A1P02461 1466 aaPredicted RBP9.59□□□□□ -0.87
USP46-208ENST00000512656 KDM2BQ8NHM5 1336 aa9.58□□□□□ -0.88
USP46-208ENST00000512656 EIF5P55010 431 aaKnown RBP9.58□□□□□ -0.88
USP46-208ENST00000512656 C16orf71Q8IYS4 520 aaPredicted RBP9.58□□□□□ -0.88
USP46-208ENST00000512656 IL17REQ8NFR9 667 aa9.58□□□□□ -0.88
USP46-208ENST00000512656 ZNF496Q96IT1 587 aaPredicted RBP9.58□□□□□ -0.88
USP46-208ENST00000512656 PRDM9Q9NQV7 894 aa9.58□□□□□ -0.88
USP46-208ENST00000512656 PKD2L1Q9P0L9 805 aa9.58□□□□□ -0.88
USP46-208ENST00000512656 HEG1Q9ULI3 1381 aa9.58□□□□□ -0.88
USP46-208ENST00000512656 ADAMTS7Q9UKP4 1686 aa9.58□□□□□ -0.88
USP46-208ENST00000512656 H0YIN7 160 aa9.57□□□□□ -0.88
USP46-208ENST00000512656 ZBTB24O43167 697 aaPredicted RBP9.57□□□□□ -0.88
USP46-208ENST00000512656 PRKAR2BP31323 418 aa9.57□□□□□ -0.88
USP46-208ENST00000512656 IL6STP40189 918 aaPredicted RBP9.57□□□□□ -0.88
USP46-208ENST00000512656 TTLL6Q8N841 843 aa9.57□□□□□ -0.88
USP46-208ENST00000512656 RTF1Q92541 710 aaKnown RBP9.57□□□□□ -0.88
USP46-208ENST00000512656 RNF181Q9P0P0 153 aa9.57□□□□□ -0.88
USP46-208ENST00000512656 CEMIPQ8WUJ3 1361 aa9.56□□□□□ -0.88
USP46-208ENST00000512656 BTBD11A6QL63 1104 aa9.56□□□□□ -0.88
USP46-208ENST00000512656 TNFRSF10AO00220 468 aa9.56□□□□□ -0.88
USP46-208ENST00000512656 DXOO77932 396 aaKnown RBP9.56□□□□□ -0.88
USP46-208ENST00000512656 U2AF1L5P0DN76 240 aaPredicted RBP9.56□□□□□ -0.88
USP46-208ENST00000512656 U2AF1Q01081 240 aaKnown RBP eCLIP9.56□□□□□ -0.88
USP46-208ENST00000512656 AMHR2Q16671 573 aa9.56□□□□□ -0.88
USP46-208ENST00000512656 BICDL1Q6ZP65 573 aa9.56□□□□□ -0.88
USP46-208ENST00000512656 C2CD5Q86YS7 1000 aa9.56□□□□□ -0.88
USP46-208ENST00000512656 ZC3H15Q8WU90 426 aaKnown RBP9.56□□□□□ -0.88
USP46-208ENST00000512656 RSPH6AQ9H0K4 717 aa9.56□□□□□ -0.88
USP46-208ENST00000512656 ZNF330Q9Y3S2 320 aaPredicted RBP9.56□□□□□ -0.88
USP46-208ENST00000512656 ZC3H4Q9UPT8 1303 aaKnown RBP9.56□□□□□ -0.88
USP46-208ENST00000512656 BRCA1P38398 1863 aaKnown RBP9.55□□□□□ -0.88
USP46-208ENST00000512656 ARFGEF1Q9Y6D6 1849 aa9.55□□□□□ -0.88
USP46-208ENST00000512656 NPHP1O15259 732 aa9.55□□□□□ -0.88
USP46-208ENST00000512656 NEFMP07197 916 aa9.55□□□□□ -0.88
USP46-208ENST00000512656 LMNB1P20700 586 aa9.55□□□□□ -0.88
USP46-208ENST00000512656 PDE6BP35913 854 aa9.55□□□□□ -0.88
USP46-208ENST00000512656 NUTM1Q86Y26 1132 aa9.55□□□□□ -0.88
USP46-208ENST00000512656 PHACTR3Q96KR7 559 aa9.55□□□□□ -0.88
USP46-208ENST00000512656 NMRK2Q9NPI5 230 aa9.55□□□□□ -0.88
USP46-208ENST00000512656 CARMIL3Q8ND23 1372 aa9.54□□□□□ -0.88
USP46-208ENST00000512656 HTATSF1O43719 755 aaKnown RBP9.54□□□□□ -0.88
USP46-208ENST00000512656 PPP2R1AP30153 589 aa9.54□□□□□ -0.88
USP46-208ENST00000512656 SETDB2Q96T68 719 aa9.54□□□□□ -0.88
USP46-208ENST00000512656 BRIP1Q9BX63 1249 aa9.54□□□□□ -0.88
USP46-208ENST00000512656 TBC1D2BQ9UPU7 963 aa9.54□□□□□ -0.88
USP46-208ENST00000512656 UBR2Q8IWV8 1755 aa9.54□□□□□ -0.88
USP46-208ENST00000512656 FAM187AA6NFU0 413 aa9.53□□□□□ -0.88
USP46-208ENST00000512656 A1BGP04217 495 aa9.53□□□□□ -0.88
USP46-208ENST00000512656 SNRPA1P09661 255 aaKnown RBP9.53□□□□□ -0.88
USP46-208ENST00000512656 SSTR3P32745 418 aaPredicted RBP9.53□□□□□ -0.88
USP46-208ENST00000512656 FSTL1Q12841 308 aa9.53□□□□□ -0.88
USP46-208ENST00000512656 TBC1D9BQ66K14 1250 aa9.53□□□□□ -0.88
USP46-208ENST00000512656 DZIP3Q86Y13 1208 aaKnown RBP9.53□□□□□ -0.88
USP46-208ENST00000512656 ZNF622Q969S3 477 aaKnown RBP eCLIP9.53□□□□□ -0.88
USP46-208ENST00000512656 ZNF652Q9Y2D9 606 aa9.53□□□□□ -0.88
USP46-208ENST00000512656 VIRMAQ69YN4 1812 aaKnown RBP9.53□□□□□ -0.88
USP46-208ENST00000512656 ST5P78524 1137 aa9.52□□□□□ -0.89
USP46-208ENST00000512656 ZNF787Q6DD87 383 aa9.52□□□□□ -0.89
USP46-208ENST00000512656 PRR5LQ6MZQ0 368 aa9.52□□□□□ -0.89
USP46-208ENST00000512656 CLEC4GQ6UXB4 293 aa9.52□□□□□ -0.89
USP46-208ENST00000512656 CNBD1Q8NA66 436 aa9.52□□□□□ -0.89
USP46-208ENST00000512656 REPIN1Q9BWE0 567 aaKnown RBP9.52□□□□□ -0.89
USP46-208ENST00000512656 RRAGCQ9HB90 399 aa9.52□□□□□ -0.89
USP46-208ENST00000512656 TOR4AQ9NXH8 423 aa9.52□□□□□ -0.89
USP46-208ENST00000512656 NRXN2Q9P2S2 1712 aa9.52□□□□□ -0.89
USP46-208ENST00000512656 KCNQ3O43525 872 aa9.51□□□□□ -0.89
USP46-208ENST00000512656 CAMTA2O94983 1202 aa9.51□□□□□ -0.89
USP46-208ENST00000512656 RASSF7Q02833 373 aa9.51□□□□□ -0.89
USP46-208ENST00000512656 FOXC1Q12948 553 aa9.51□□□□□ -0.89
USP46-208ENST00000512656 TAF7Q15545 349 aaPredicted RBP9.51□□□□□ -0.89
USP46-208ENST00000512656 SOGA3Q5TF21 947 aa9.51□□□□□ -0.89
USP46-208ENST00000512656 MCM10Q7L590 875 aa9.51□□□□□ -0.89
USP46-208ENST00000512656 RETREG3Q86VR2 466 aa9.51□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 42.4 ms