RNA–Protein interactions for RNA: ENST00000512228.5

LIMCH1-214, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 4

Gene LIMCH1, Length 473 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-214ENST00000512228 EXOSC9Q06265 439 aaKnown RBP14.39□□□□□ -0.11
LIMCH1-214ENST00000512228 BCL2L13Q9BXK5 485 aa14.39□□□□□ -0.11
LIMCH1-214ENST00000512228 FANCIQ9NVI1 1328 aa14.39□□□□□ -0.11
LIMCH1-214ENST00000512228 ECE2O60344 883 aa14.38□□□□□ -0.11
LIMCH1-214ENST00000512228 ZEB1P37275 1124 aaPredicted RBP14.38□□□□□ -0.11
LIMCH1-214ENST00000512228 CASP7P55210 303 aa14.38□□□□□ -0.11
LIMCH1-214ENST00000512228 TNIP1Q15025 636 aa14.38□□□□□ -0.11
LIMCH1-214ENST00000512228 MICALL2Q8IY33 904 aa14.38□□□□□ -0.11
LIMCH1-214ENST00000512228 GREM2Q9H772 168 aa14.38□□□□□ -0.11
LIMCH1-214ENST00000512228 PODXL2Q9NZ53 605 aa14.38□□□□□ -0.11
LIMCH1-214ENST00000512228 ABT1Q9ULW3 272 aaKnown RBP14.38□□□□□ -0.11
LIMCH1-214ENST00000512228 SPEF2Q9C093 1822 aa14.38□□□□□ -0.11
LIMCH1-214ENST00000512228 IL16Q14005 1332 aa14.38□□□□□ -0.11
LIMCH1-214ENST00000512228 ANP32CO43423 234 aa14.37□□□□□ -0.11
LIMCH1-214ENST00000512228 DDX58O95786 925 aaKnown RBP14.37□□□□□ -0.11
LIMCH1-214ENST00000512228 CCDC152Q4G0S7 254 aa14.37□□□□□ -0.11
LIMCH1-214ENST00000512228 RBM26Q5T8P6 1007 aaKnown RBP14.37□□□□□ -0.11
LIMCH1-214ENST00000512228 WBP1LQ9NX94 342 aa14.37□□□□□ -0.11
LIMCH1-214ENST00000512228 ASTN2O75129 1339 aaPredicted RBP14.37□□□□□ -0.11
LIMCH1-214ENST00000512228 CDHR2Q9BYE9 1310 aa14.37□□□□□ -0.11
LIMCH1-214ENST00000512228 WDR33Q9C0J8 1336 aaKnown RBP14.37□□□□□ -0.11
LIMCH1-214ENST00000512228 MYH3P11055 1940 aa14.37□□□□□ -0.11
LIMCH1-214ENST00000512228 F6X3S4 739 aa14.36□□□□□ -0.11
LIMCH1-214ENST00000512228 UFL1O94874 794 aa14.36□□□□□ -0.11
LIMCH1-214ENST00000512228 CTSWP56202 376 aa14.36□□□□□ -0.11
LIMCH1-214ENST00000512228 FLIIQ13045 1269 aa14.36□□□□□ -0.11
LIMCH1-214ENST00000512228 TBC1D10BQ4KMP7 808 aaPredicted RBP14.36□□□□□ -0.11
LIMCH1-214ENST00000512228 NCBP3Q53F19 620 aaKnown RBP14.36□□□□□ -0.11
LIMCH1-214ENST00000512228 CYP4F22Q6NT55 531 aa14.36□□□□□ -0.11
LIMCH1-214ENST00000512228 UBE3BQ7Z3V4 1068 aa14.36□□□□□ -0.11
LIMCH1-214ENST00000512228 USP48Q86UV5 1035 aa14.36□□□□□ -0.11
LIMCH1-214ENST00000512228 FAM9BQ8IZU0 186 aa14.36□□□□□ -0.11
LIMCH1-214ENST00000512228 ANKIB1Q9P2G1 1089 aa14.36□□□□□ -0.11
LIMCH1-214ENST00000512228 VIL1P09327 827 aaKnown RBP14.35□□□□□ -0.11
LIMCH1-214ENST00000512228 GCKRQ14397 625 aa14.35□□□□□ -0.11
LIMCH1-214ENST00000512228 TXNRD3Q86VQ6 643 aa14.35□□□□□ -0.11
LIMCH1-214ENST00000512228 WDR63Q8IWG1 891 aa14.35□□□□□ -0.11
LIMCH1-214ENST00000512228 TNS4Q8IZW8 715 aa14.35□□□□□ -0.11
LIMCH1-214ENST00000512228 DPF2Q92785 391 aa14.35□□□□□ -0.11
LIMCH1-214ENST00000512228 STK31Q9BXU1 1019 aa14.35□□□□□ -0.11
LIMCH1-214ENST00000512228 ZC3H12CQ9C0D7 883 aaKnown RBP14.35□□□□□ -0.11
LIMCH1-214ENST00000512228 MINPP1Q9UNW1 487 aa14.35□□□□□ -0.11
LIMCH1-214ENST00000512228 CACNA1FO60840 1977 aa14.34□□□□□ -0.11
LIMCH1-214ENST00000512228 AOC2O75106 756 aa14.34□□□□□ -0.11
LIMCH1-214ENST00000512228 CAPN15O75808 1086 aa14.34□□□□□ -0.11
LIMCH1-214ENST00000512228 CELF2O95319 508 aaKnown RBP14.34□□□□□ -0.11
LIMCH1-214ENST00000512228 ANKRD18AQ8IVF6 992 aa14.34□□□□□ -0.11
LIMCH1-214ENST00000512228 ZIC5Q96T25 663 aa14.34□□□□□ -0.11
LIMCH1-214ENST00000512228 MXD3Q9BW11 206 aa14.34□□□□□ -0.11
LIMCH1-214ENST00000512228 GGA1Q9UJY5 639 aa14.34□□□□□ -0.11
LIMCH1-214ENST00000512228 TLL2Q9Y6L7 1015 aa14.34□□□□□ -0.11
LIMCH1-214ENST00000512228 H7C1D1 291 aa14.33□□□□□ -0.12
LIMCH1-214ENST00000512228 KLRK1P26718 216 aa14.33□□□□□ -0.12
LIMCH1-214ENST00000512228 GRM1Q13255 1194 aa14.33□□□□□ -0.12
LIMCH1-214ENST00000512228 SAPCD2Q86UD0 394 aa14.33□□□□□ -0.12
LIMCH1-214ENST00000512228 ZC3H15Q8WU90 426 aaKnown RBP14.33□□□□□ -0.12
LIMCH1-214ENST00000512228 CAPNS2Q96L46 248 aa14.33□□□□□ -0.12
LIMCH1-214ENST00000512228 EYA3Q99504 573 aa14.33□□□□□ -0.12
LIMCH1-214ENST00000512228 SCAF8Q9UPN6 1271 aaKnown RBP14.33□□□□□ -0.12
LIMCH1-214ENST00000512228 ZNF646O15015 1829 aaPredicted RBP14.32□□□□□ -0.12
LIMCH1-214ENST00000512228 SNAP23O00161 211 aa14.32□□□□□ -0.12
LIMCH1-214ENST00000512228 CSF1RP07333 972 aa14.32□□□□□ -0.12
LIMCH1-214ENST00000512228 LBX1P52954 281 aa14.32□□□□□ -0.12
LIMCH1-214ENST00000512228 FKBP5Q13451 457 aaPredicted RBP14.32□□□□□ -0.12
LIMCH1-214ENST00000512228 CDC37L1Q7L3B6 337 aa14.32□□□□□ -0.12
LIMCH1-214ENST00000512228 DNAAF4Q8WXU2 420 aa14.32□□□□□ -0.12
LIMCH1-214ENST00000512228 GMLQ99445 158 aa14.32□□□□□ -0.12
LIMCH1-214ENST00000512228 ZNF408Q9H9D4 720 aa14.32□□□□□ -0.12
LIMCH1-214ENST00000512228 BSDC1Q9NW68 430 aaPredicted RBP14.32□□□□□ -0.12
LIMCH1-214ENST00000512228 PSME4Q14997 1843 aa14.31□□□□□ -0.12
LIMCH1-214ENST00000512228 ADM5C9JUS6 153 aa14.31□□□□□ -0.12
LIMCH1-214ENST00000512228 FOXO4P98177 505 aa14.31□□□□□ -0.12
LIMCH1-214ENST00000512228 NEXNQ0ZGT2 675 aa14.31□□□□□ -0.12
LIMCH1-214ENST00000512228 FAM161AQ3B820 660 aa14.31□□□□□ -0.12
LIMCH1-214ENST00000512228 EPHA10Q5JZY3 1008 aa14.31□□□□□ -0.12
LIMCH1-214ENST00000512228 BEND3Q5T5X7 828 aa14.31□□□□□ -0.12
LIMCH1-214ENST00000512228 PLA2G12BQ9BX93 195 aa14.31□□□□□ -0.12
LIMCH1-214ENST00000512228 XDHP47989 1333 aa14.31□□□□□ -0.12
LIMCH1-214ENST00000512228 HSPA8P11142 646 aaKnown RBP14.3□□□□□ -0.12
LIMCH1-214ENST00000512228 HSP90B1P14625 803 aaKnown RBP14.3□□□□□ -0.12
LIMCH1-214ENST00000512228 ITGA6P23229 1130 aa14.3□□□□□ -0.12
LIMCH1-214ENST00000512228 ATP2B4P23634 1241 aa14.3□□□□□ -0.12
LIMCH1-214ENST00000512228 PAXIP1Q6ZW49 1069 aaPredicted RBP14.3□□□□□ -0.12
LIMCH1-214ENST00000512228 LINS1Q8NG48 757 aa14.3□□□□□ -0.12
LIMCH1-214ENST00000512228 CHMP4AQ9BY43 222 aa14.3□□□□□ -0.12
LIMCH1-214ENST00000512228 RPS12P25398 132 aaKnown RBP14.29□□□□□ -0.12
LIMCH1-214ENST00000512228 CCT4P50991 539 aaKnown RBP14.29□□□□□ -0.12
LIMCH1-214ENST00000512228 ZNF280AP59817 542 aaPredicted RBP14.29□□□□□ -0.12
LIMCH1-214ENST00000512228 RSBN1LQ6PCB5 846 aaPredicted RBP14.29□□□□□ -0.12
LIMCH1-214ENST00000512228 CDC5LQ99459 802 aaKnown RBP14.29□□□□□ -0.12
LIMCH1-214ENST00000512228 TSKSQ9UJT2 592 aa14.29□□□□□ -0.12
LIMCH1-214ENST00000512228 ZNF521Q96K83 1311 aa14.29□□□□□ -0.12
LIMCH1-214ENST00000512228 G3V3G9 751 aa14.28□□□□□ -0.12
LIMCH1-214ENST00000512228 CTCFP49711 727 aaPredicted RBP14.28□□□□□ -0.12
LIMCH1-214ENST00000512228 SCARF1Q14162 830 aa14.28□□□□□ -0.12
LIMCH1-214ENST00000512228 KIF4BQ2VIQ3 1234 aa14.28□□□□□ -0.12
LIMCH1-214ENST00000512228 DCAF8Q5TAQ9 597 aa14.28□□□□□ -0.12
LIMCH1-214ENST00000512228 KRT26Q7Z3Y9 468 aa14.28□□□□□ -0.12
LIMCH1-214ENST00000512228 HELBQ8NG08 1087 aaPredicted RBP14.28□□□□□ -0.12
LIMCH1-214ENST00000512228 PRDM10Q9NQV6 1147 aa14.28□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 24.2 ms