RNA–Protein interactions for RNA: ENST00000508342.5

NEDD4-208, Transcript of neural precursor cell expressed, developmentally down-regulated 4, E3 ubiquitin protein ligase, humanhuman

TSL 1 (best) BASIC

Gene NEDD4, Length 7,235 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD4-208ENST00000508342 LSM14AQ8ND56 463 aaKnown RBP3.53□□□□□ -1.84
NEDD4-208ENST00000508342 RAET1EQ8TD07 263 aa3.53□□□□□ -1.84
NEDD4-208ENST00000508342 TFRCP02786 760 aaKnown RBP3.53□□□□□ -1.84
NEDD4-208ENST00000508342 ARHGEF25Q86VW2 580 aa3.53□□□□□ -1.84
NEDD4-208ENST00000508342 CCDC82Q8N4S0 544 aa3.53□□□□□ -1.84
NEDD4-208ENST00000508342 SCLT1Q96NL6 688 aa3.53□□□□□ -1.84
NEDD4-208ENST00000508342 ZNF287Q9HBT7 754 aa3.53□□□□□ -1.84
NEDD4-208ENST00000508342 MAST3O60307 1309 aa3.53□□□□□ -1.84
NEDD4-208ENST00000508342 TNKS1BP1Q9C0C2 1729 aaKnown RBP3.53□□□□□ -1.84
NEDD4-208ENST00000508342 MCCD1P59942 119 aaPredicted RBP3.53□□□□□ -1.84
NEDD4-208ENST00000508342 SUPT20HL1Q3ZLR7 823 aa3.53□□□□□ -1.84
NEDD4-208ENST00000508342 XAGE3Q8WTP9 111 aa3.53□□□□□ -1.84
NEDD4-208ENST00000508342 PIGBQ92521 554 aa3.53□□□□□ -1.84
NEDD4-208ENST00000508342 HCLS1P14317 486 aaPredicted RBP3.52□□□□□ -1.85
NEDD4-208ENST00000508342 TBC1D10BQ4KMP7 808 aaPredicted RBP3.52□□□□□ -1.85
NEDD4-208ENST00000508342 CT47A1Q5JQC4 288 aaPredicted RBP3.52□□□□□ -1.85
NEDD4-208ENST00000508342 ZNF790Q6PG37 636 aa3.52□□□□□ -1.85
NEDD4-208ENST00000508342 USP48Q86UV5 1035 aa3.52□□□□□ -1.85
NEDD4-208ENST00000508342 DNAJC10Q8IXB1 793 aa3.52□□□□□ -1.85
NEDD4-208ENST00000508342 DBF4Q9UBU7 674 aaPredicted RBP3.52□□□□□ -1.85
NEDD4-208ENST00000508342 N4BP2Q86UW6 1770 aaPredicted RBP3.52□□□□□ -1.85
NEDD4-208ENST00000508342 APAF1O14727 1248 aa3.52□□□□□ -1.85
NEDD4-208ENST00000508342 PABPC4Q13310 644 aaKnown RBP eCLIP3.52□□□□□ -1.85
NEDD4-208ENST00000508342 TRIM29Q14134 588 aa3.52□□□□□ -1.85
NEDD4-208ENST00000508342 APOBEC3FQ8IUX4 373 aaKnown RBP3.52□□□□□ -1.85
NEDD4-208ENST00000508342 IVNS1ABPQ9Y6Y0 642 aa3.52□□□□□ -1.85
NEDD4-208ENST00000508342 RPS6KA4O75676 772 aa3.52□□□□□ -1.85
NEDD4-208ENST00000508342 ATP2B4P23634 1241 aa3.52□□□□□ -1.85
NEDD4-208ENST00000508342 UBXN2AP68543 259 aa3.52□□□□□ -1.85
NEDD4-208ENST00000508342 TNFAIP1Q13829 316 aa3.52□□□□□ -1.85
NEDD4-208ENST00000508342 CCDC96Q2M329 555 aa3.52□□□□□ -1.85
NEDD4-208ENST00000508342 ANKRD13DQ6ZTN6 518 aa3.52□□□□□ -1.85
NEDD4-208ENST00000508342 DBNDD1Q9H9R9 158 aa3.52□□□□□ -1.85
NEDD4-208ENST00000508342 MKNK2Q9HBH9 465 aa3.52□□□□□ -1.85
NEDD4-208ENST00000508342 GOPCQ9HD26 462 aa3.52□□□□□ -1.85
NEDD4-208ENST00000508342 MON2Q7Z3U7 1717 aa3.52□□□□□ -1.85
NEDD4-208ENST00000508342 WNK3Q9BYP7 1800 aa3.52□□□□□ -1.85
NEDD4-208ENST00000508342 LPXNO60711 386 aa3.52□□□□□ -1.85
NEDD4-208ENST00000508342 TPM3P06753 285 aa3.52□□□□□ -1.85
NEDD4-208ENST00000508342 MATR3P43243 847 aaKnown RBP eCLIP3.52□□□□□ -1.858e-6■■■□□ 17.4
NEDD4-208ENST00000508342 AXDND1Q5T1B0 1012 aaPredicted RBP3.52□□□□□ -1.85
NEDD4-208ENST00000508342 GJC2Q5T442 439 aaPredicted RBP3.52□□□□□ -1.85
NEDD4-208ENST00000508342 KRT26Q7Z3Y9 468 aa3.52□□□□□ -1.85
NEDD4-208ENST00000508342 XPO5Q9HAV4 1204 aaKnown RBP eCLIP3.52□□□□□ -1.85
NEDD4-208ENST00000508342 KIF7Q2M1P5 1343 aa3.52□□□□□ -1.85
NEDD4-208ENST00000508342 ZEB2O60315 1214 aa3.52□□□□□ -1.85
NEDD4-208ENST00000508342 A1BGP04217 495 aa3.52□□□□□ -1.85
NEDD4-208ENST00000508342 TDO2P48775 406 aa3.52□□□□□ -1.85
NEDD4-208ENST00000508342 IRX3P78415 501 aaPredicted RBP3.52□□□□□ -1.85
NEDD4-208ENST00000508342 ZFYVE27Q5T4F4 411 aa3.52□□□□□ -1.85
NEDD4-208ENST00000508342 API5Q9BZZ5 524 aaKnown RBP3.52□□□□□ -1.85
NEDD4-208ENST00000508342 ABCA3Q99758 1704 aa3.52□□□□□ -1.85
NEDD4-208ENST00000508342 PXDNQ92626 1479 aa3.52□□□□□ -1.85
NEDD4-208ENST00000508342 CCT4P50991 539 aaKnown RBP3.52□□□□□ -1.85
NEDD4-208ENST00000508342 SKIV2LQ15477 1246 aaKnown RBP3.52□□□□□ -1.85
NEDD4-208ENST00000508342 SPOUT1Q5T280 376 aaKnown RBP3.52□□□□□ -1.85
NEDD4-208ENST00000508342 HSCBQ8IWL3 235 aa3.52□□□□□ -1.85
NEDD4-208ENST00000508342 MICALL1Q8N3F8 863 aa3.52□□□□□ -1.85
NEDD4-208ENST00000508342 PIK3R5Q8WYR1 880 aa3.52□□□□□ -1.85
NEDD4-208ENST00000508342 PLCD4Q9BRC7 762 aa3.52□□□□□ -1.85
NEDD4-208ENST00000508342 IFT57Q9NWB7 429 aa3.52□□□□□ -1.85
NEDD4-208ENST00000508342 PDE8AO60658 829 aa3.51□□□□□ -1.85
NEDD4-208ENST00000508342 KDM4AO75164 1064 aa3.51□□□□□ -1.85
NEDD4-208ENST00000508342 CTCFP49711 727 aaPredicted RBP3.51□□□□□ -1.85
NEDD4-208ENST00000508342 DGKZQ13574 1117 aa3.51□□□□□ -1.85
NEDD4-208ENST00000508342 STYK1Q6J9G0 422 aa3.51□□□□□ -1.85
NEDD4-208ENST00000508342 PRPF40BQ6NWY9 871 aaKnown RBP3.51□□□□□ -1.85
NEDD4-208ENST00000508342 COPS6Q7L5N1 327 aa3.51□□□□□ -1.85
NEDD4-208ENST00000508342 TANGO6Q9C0B7 1094 aa3.51□□□□□ -1.85
NEDD4-208ENST00000508342 SRCIN1Q9C0H9 1055 aa3.51□□□□□ -1.85
NEDD4-208ENST00000508342 EHMT1Q9H9B1 1298 aa3.51□□□□□ -1.85
NEDD4-208ENST00000508342 COL5A2P05997 1499 aaPredicted RBP3.51□□□□□ -1.85
NEDD4-208ENST00000508342 LRP6O75581 1613 aa3.51□□□□□ -1.85
NEDD4-208ENST00000508342 ALS2Q96Q42 1657 aa3.51□□□□□ -1.85
NEDD4-208ENST00000508342 USP17L3A6NCW0 530 aa3.51□□□□□ -1.85
NEDD4-208ENST00000508342 USP17L4A6NCW7 530 aa3.51□□□□□ -1.85
NEDD4-208ENST00000508342 ECE2O60344 883 aa3.51□□□□□ -1.85
NEDD4-208ENST00000508342 ZNF76P36508 570 aa3.51□□□□□ -1.85
NEDD4-208ENST00000508342 DCAF15Q66K64 600 aa3.51□□□□□ -1.85
NEDD4-208ENST00000508342 USP17L1Q7RTZ2 530 aa3.51□□□□□ -1.85
NEDD4-208ENST00000508342 NACAP1Q9BZK3 213 aa3.51□□□□□ -1.85
NEDD4-208ENST00000508342 ZFYVE28Q9HCC9 887 aa3.51□□□□□ -1.85
NEDD4-208ENST00000508342 CEP126Q9P2H0 1117 aa3.51□□□□□ -1.85
NEDD4-208ENST00000508342 SERPINA10Q9UK55 444 aa3.51□□□□□ -1.85
NEDD4-208ENST00000508342 CLGNO14967 610 aa3.51□□□□□ -1.85
NEDD4-208ENST00000508342 ERC2O15083 957 aa3.51□□□□□ -1.85
NEDD4-208ENST00000508342 GNAI2P04899 355 aa3.51□□□□□ -1.85
NEDD4-208ENST00000508342 LDHBP07195 334 aaKnown RBP3.51□□□□□ -1.85
NEDD4-208ENST00000508342 LDHCP07864 332 aa3.51□□□□□ -1.85
NEDD4-208ENST00000508342 IRX6P78412 446 aaPredicted RBP3.51□□□□□ -1.85
NEDD4-208ENST00000508342 TCP10Q12799 353 aa3.51□□□□□ -1.85
NEDD4-208ENST00000508342 LDHAL6AQ6ZMR3 332 aa3.51□□□□□ -1.85
NEDD4-208ENST00000508342 ZNF444Q8N0Y2 327 aaPredicted RBP3.51□□□□□ -1.85
NEDD4-208ENST00000508342 MARCH10Q8NA82 808 aaPredicted RBP3.51□□□□□ -1.85
NEDD4-208ENST00000508342 FAM184AQ8NB25 1140 aa3.51□□□□□ -1.85
NEDD4-208ENST00000508342 CLUAP1Q96AJ1 413 aa3.51□□□□□ -1.85
NEDD4-208ENST00000508342 SYT17Q9BSW7 474 aa3.51□□□□□ -1.85
NEDD4-208ENST00000508342 SAP30BPQ9UHR5 308 aaKnown RBP3.51□□□□□ -1.85
NEDD4-208ENST00000508342 ANGEL1Q9UNK9 670 aaKnown RBP3.51□□□□□ -1.85
NEDD4-208ENST00000508342 TMEM88BA6NKF7 163 aa3.51□□□□□ -1.85
Retrieved 100 of 20,778 RNA–protein pairs in 12.9 ms