RNA–Protein interactions for RNA: ENST00000507004.1

HMGCS1-203, Transcript of 3-hydroxy-3-methylglutaryl-CoA synthase 1, humanhuman

TSL 2

Gene HMGCS1, Length 950 nt, Biotype retained intron, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCS1-203ENST00000507004 SEC31BQ9NQW1 1179 aa18.42■□□□□ 0.54
HMGCS1-203ENST00000507004 ABT1Q9ULW3 272 aaKnown RBP18.42■□□□□ 0.54
HMGCS1-203ENST00000507004 H7C1W4 665 aa18.41■□□□□ 0.54
HMGCS1-203ENST00000507004 RIMBP2O15034 1052 aa18.41■□□□□ 0.54
HMGCS1-203ENST00000507004 ECE2O60344 883 aa18.41■□□□□ 0.54
HMGCS1-203ENST00000507004 VAMP4O75379 141 aa18.41■□□□□ 0.54
HMGCS1-203ENST00000507004 UFL1O94874 794 aa18.41■□□□□ 0.54
HMGCS1-203ENST00000507004 CDC37L1Q7L3B6 337 aa18.41■□□□□ 0.54
HMGCS1-203ENST00000507004 LINS1Q8NG48 757 aa18.41■□□□□ 0.54
HMGCS1-203ENST00000507004 DNAAF4Q8WXU2 420 aa18.41■□□□□ 0.54
HMGCS1-203ENST00000507004 AIDAQ96BJ3 306 aa18.41■□□□□ 0.54
HMGCS1-203ENST00000507004 PLA2G12BQ9BX93 195 aa18.41■□□□□ 0.54
HMGCS1-203ENST00000507004 DBNDD1Q9H9R9 158 aa18.41■□□□□ 0.54
HMGCS1-203ENST00000507004 TTLL11Q8NHH1 800 aa18.4■□□□□ 0.54
HMGCS1-203ENST00000507004 BSDC1Q9NW68 430 aaPredicted RBP18.4■□□□□ 0.54
HMGCS1-203ENST00000507004 PSMD14O00487 310 aa18.39■□□□□ 0.53
HMGCS1-203ENST00000507004 VEGFBP49765 207 aa18.39■□□□□ 0.53
HMGCS1-203ENST00000507004 MAP2K1Q02750 393 aaPredicted RBP18.39■□□□□ 0.53
HMGCS1-203ENST00000507004 GCKRQ14397 625 aa18.39■□□□□ 0.53
HMGCS1-203ENST00000507004 MICALL2Q8IY33 904 aa18.39■□□□□ 0.53
HMGCS1-203ENST00000507004 IGHMBP2P38935 993 aaKnown RBP18.38■□□□□ 0.53
HMGCS1-203ENST00000507004 EXOSC9Q06265 439 aaKnown RBP18.38■□□□□ 0.53
HMGCS1-203ENST00000507004 CWF19L2Q2TBE0 894 aaKnown RBP18.38■□□□□ 0.53
HMGCS1-203ENST00000507004 G2E3Q7L622 706 aa18.38■□□□□ 0.53
HMGCS1-203ENST00000507004 UBE3BQ7Z3V4 1068 aa18.38■□□□□ 0.53
HMGCS1-203ENST00000507004 PODNQ7Z5L7 613 aa18.38■□□□□ 0.53
HMGCS1-203ENST00000507004 HHIPL1Q96JK4 782 aa18.38■□□□□ 0.53
HMGCS1-203ENST00000507004 ZNF609O15014 1411 aa18.38■□□□□ 0.53
HMGCS1-203ENST00000507004 TRPM7Q96QT4 1865 aa18.37■□□□□ 0.53
HMGCS1-203ENST00000507004 VIL1P09327 827 aaKnown RBP18.37■□□□□ 0.53
HMGCS1-203ENST00000507004 DOK7Q18PE1 504 aa18.37■□□□□ 0.53
HMGCS1-203ENST00000507004 FAM9BQ8IZU0 186 aa18.37■□□□□ 0.53
HMGCS1-203ENST00000507004 AGBL3Q8NEM8 1001 aa18.37■□□□□ 0.53
HMGCS1-203ENST00000507004 SALL2Q9Y467 1007 aaPredicted RBP18.37■□□□□ 0.53
HMGCS1-203ENST00000507004 MYH3P11055 1940 aa18.37■□□□□ 0.53
HMGCS1-203ENST00000507004 CTCFP49711 727 aaPredicted RBP18.36■□□□□ 0.53
HMGCS1-203ENST00000507004 MMP14P50281 582 aa18.36■□□□□ 0.53
HMGCS1-203ENST00000507004 JARID2Q92833 1246 aaPredicted RBP18.36■□□□□ 0.53
HMGCS1-203ENST00000507004 CCDC85AQ96PX6 553 aaPredicted RBP18.36■□□□□ 0.53
HMGCS1-203ENST00000507004 WDR33Q9C0J8 1336 aaKnown RBP18.36■□□□□ 0.53
HMGCS1-203ENST00000507004 ANKRD2Q9GZV1 360 aa18.36■□□□□ 0.53
HMGCS1-203ENST00000507004 GREM2Q9H772 168 aa18.36■□□□□ 0.53
HMGCS1-203ENST00000507004 PRDM10Q9NQV6 1147 aa18.36■□□□□ 0.53
HMGCS1-203ENST00000507004 LEMD3Q9Y2U8 911 aa18.36■□□□□ 0.53
HMGCS1-203ENST00000507004 TLL2Q9Y6L7 1015 aa18.36■□□□□ 0.53
HMGCS1-203ENST00000507004 MED23Q9ULK4 1368 aa18.35■□□□□ 0.53
HMGCS1-203ENST00000507004 COL13A1Q5TAT6 717 aaPredicted RBP18.35■□□□□ 0.53
HMGCS1-203ENST00000507004 TNS4Q8IZW8 715 aa18.35■□□□□ 0.53
HMGCS1-203ENST00000507004 TRPM4Q8TD43 1214 aa18.35■□□□□ 0.53
HMGCS1-203ENST00000507004 MPHOSPH8Q99549 860 aa18.35■□□□□ 0.53
HMGCS1-203ENST00000507004 WBP1LQ9NX94 342 aa18.35■□□□□ 0.53
HMGCS1-203ENST00000507004 ZBTB12Q9Y330 459 aaPredicted RBP18.35■□□□□ 0.53
HMGCS1-203ENST00000507004 CELF2O95319 508 aaKnown RBP18.34■□□□□ 0.53
HMGCS1-203ENST00000507004 CSF1RP07333 972 aa18.34■□□□□ 0.53
HMGCS1-203ENST00000507004 HIRAP54198 1017 aaPredicted RBP18.34■□□□□ 0.53
HMGCS1-203ENST00000507004 CST9Q5W186 159 aa18.34■□□□□ 0.53
HMGCS1-203ENST00000507004 DCPSQ96C86 337 aaKnown RBP18.34■□□□□ 0.53
HMGCS1-203ENST00000507004 MINPP1Q9UNW1 487 aa18.34■□□□□ 0.53
HMGCS1-203ENST00000507004 TRAF5O00463 557 aa18.33■□□□□ 0.52
HMGCS1-203ENST00000507004 MAP2K2P36507 400 aa18.33■□□□□ 0.52
HMGCS1-203ENST00000507004 RSBN1LQ6PCB5 846 aaPredicted RBP18.33■□□□□ 0.52
HMGCS1-203ENST00000507004 PAXIP1Q6ZW49 1069 aaPredicted RBP18.33■□□□□ 0.52
HMGCS1-203ENST00000507004 CAPNS2Q96L46 248 aa18.33■□□□□ 0.52
HMGCS1-203ENST00000507004 BEGAINQ9BUH8 593 aa18.33■□□□□ 0.52
HMGCS1-203ENST00000507004 GLIS2Q9BZE0 524 aaPredicted RBP18.33■□□□□ 0.52
HMGCS1-203ENST00000507004 COL4A1P02462 1669 aa18.32■□□□□ 0.52
HMGCS1-203ENST00000507004 MYO3BQ8WXR4 1341 aa18.32■□□□□ 0.52
HMGCS1-203ENST00000507004 USP17L3A6NCW0 530 aa18.32■□□□□ 0.52
HMGCS1-203ENST00000507004 USP17L4A6NCW7 530 aa18.32■□□□□ 0.52
HMGCS1-203ENST00000507004 ITGA6P23229 1130 aa18.32■□□□□ 0.52
HMGCS1-203ENST00000507004 CCT4P50991 539 aaKnown RBP18.32■□□□□ 0.52
HMGCS1-203ENST00000507004 CASP7P55210 303 aa18.32■□□□□ 0.52
HMGCS1-203ENST00000507004 KIF4BQ2VIQ3 1234 aa18.32■□□□□ 0.52
HMGCS1-203ENST00000507004 USP17L1Q7RTZ2 530 aa18.32■□□□□ 0.52
HMGCS1-203ENST00000507004 SAPCD2Q86UD0 394 aa18.32■□□□□ 0.52
HMGCS1-203ENST00000507004 COA1Q9GZY4 146 aa18.32■□□□□ 0.52
HMGCS1-203ENST00000507004 ANKRD18BA2A2Z9 1011 aa18.31■□□□□ 0.52
HMGCS1-203ENST00000507004 ALDH1L1O75891 902 aa18.31■□□□□ 0.52
HMGCS1-203ENST00000507004 ZNF280AP59817 542 aaPredicted RBP18.31■□□□□ 0.52
HMGCS1-203ENST00000507004 TBC1D10BQ4KMP7 808 aaPredicted RBP18.31■□□□□ 0.52
HMGCS1-203ENST00000507004 SAMD7Q7Z3H4 446 aa18.31■□□□□ 0.52
HMGCS1-203ENST00000507004 GPR101Q96P66 508 aaPredicted RBP18.31■□□□□ 0.52
HMGCS1-203ENST00000507004 FOXN1O15353 648 aa18.3■□□□□ 0.52
HMGCS1-203ENST00000507004 USP17L8P0C7I0 530 aa18.3■□□□□ 0.52
HMGCS1-203ENST00000507004 BEND3Q5T5X7 828 aa18.3■□□□□ 0.52
HMGCS1-203ENST00000507004 KRT26Q7Z3Y9 468 aa18.3■□□□□ 0.52
HMGCS1-203ENST00000507004 SULF1Q8IWU6 871 aa18.3■□□□□ 0.52
HMGCS1-203ENST00000507004 CA12O43570 354 aa18.29■□□□□ 0.52
HMGCS1-203ENST00000507004 IFIT5Q13325 482 aaKnown RBP18.29■□□□□ 0.52
HMGCS1-203ENST00000507004 FAM161AQ3B820 660 aa18.29■□□□□ 0.52
HMGCS1-203ENST00000507004 STRIP1Q5VSL9 837 aa18.29■□□□□ 0.52
HMGCS1-203ENST00000507004 USP48Q86UV5 1035 aa18.29■□□□□ 0.52
HMGCS1-203ENST00000507004 OGFOD1Q8N543 542 aa18.29■□□□□ 0.52
HMGCS1-203ENST00000507004 KCNQ5Q9NR82 932 aa18.29■□□□□ 0.52
HMGCS1-203ENST00000507004 ZNF804BA4D1E1 1349 aa18.28■□□□□ 0.52
HMGCS1-203ENST00000507004 ZNF521Q96K83 1311 aa18.28■□□□□ 0.52
HMGCS1-203ENST00000507004 E9PSI1 815 aa18.28■□□□□ 0.52
HMGCS1-203ENST00000507004 GRM8O00222 908 aa18.28■□□□□ 0.52
HMGCS1-203ENST00000507004 KCNJ4P48050 445 aa18.28■□□□□ 0.52
HMGCS1-203ENST00000507004 FMR1Q06787 632 aaKnown RBP eCLIP18.28■□□□□ 0.521e-7■■■□□ 18.8
Retrieved 100 of 20,778 RNA–protein pairs in 17.6 ms