RNA–Protein interactions for RNA: ENST00000506368.5

SCLT1-208, Transcript of sodium channel and clathrin linker 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SCLT1, Length 2,096 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCLT1-208ENST00000506368 FERMT3Q86UX7 667 aa18.58■□□□□ 0.57
SCLT1-208ENST00000506368 CWC15Q9P013 229 aaKnown RBP18.58■□□□□ 0.57
SCLT1-208ENST00000506368 USP31Q70CQ4 1352 aa18.58■□□□□ 0.56
SCLT1-208ENST00000506368 PTH1RQ03431 593 aa18.58■□□□□ 0.56
SCLT1-208ENST00000506368 CTR9Q6PD62 1173 aa18.58■□□□□ 0.56
SCLT1-208ENST00000506368 ILDR1Q86SU0 546 aaPredicted RBP18.58■□□□□ 0.56
SCLT1-208ENST00000506368 CLASRPQ8N2M8 674 aaKnown RBP18.58■□□□□ 0.56
SCLT1-208ENST00000506368 LRRC59Q96AG4 307 aaKnown RBP18.58■□□□□ 0.56
SCLT1-208ENST00000506368 BPIFA3Q9BQP9 254 aa18.58■□□□□ 0.56
SCLT1-208ENST00000506368 RBM8AQ9Y5S9 174 aaKnown RBP18.58■□□□□ 0.56
SCLT1-208ENST00000506368 MAP4K4O95819 1239 aaPredicted RBP18.57■□□□□ 0.56
SCLT1-208ENST00000506368 CPA1P15085 419 aa18.57■□□□□ 0.56
SCLT1-208ENST00000506368 KRT32Q14532 448 aa18.57■□□□□ 0.56
SCLT1-208ENST00000506368 NECAB1Q8N987 351 aa18.57■□□□□ 0.56
SCLT1-208ENST00000506368 SBNO1A3KN83 1393 aa18.57■□□□□ 0.56
SCLT1-208ENST00000506368 MARF1Q9Y4F3 1742 aaKnown RBP18.57■□□□□ 0.56
SCLT1-208ENST00000506368 SRGAP3O43295 1099 aa18.56■□□□□ 0.56
SCLT1-208ENST00000506368 RPS6KB1P23443 525 aa18.56■□□□□ 0.56
SCLT1-208ENST00000506368 RESTQ13127 1097 aa18.56■□□□□ 0.56
SCLT1-208ENST00000506368 UBXN4Q92575 508 aa18.56■□□□□ 0.56
SCLT1-208ENST00000506368 FEZ2Q9UHY8 353 aaPredicted RBP18.56■□□□□ 0.56
SCLT1-208ENST00000506368 PEAK1Q9H792 1746 aa18.56■□□□□ 0.56
SCLT1-208ENST00000506368 MTX1Q13505 466 aa18.56■□□□□ 0.56
SCLT1-208ENST00000506368 LARP1Q6PKG0 1096 aaKnown RBP18.56■□□□□ 0.56
SCLT1-208ENST00000506368 CCDC73Q6ZRK6 1079 aa18.56■□□□□ 0.56
SCLT1-208ENST00000506368 MYH15Q9Y2K3 1946 aa18.55■□□□□ 0.56
SCLT1-208ENST00000506368 SOX12O15370 315 aa18.55■□□□□ 0.56
SCLT1-208ENST00000506368 PLA2G4AP47712 749 aa18.55■□□□□ 0.56
SCLT1-208ENST00000506368 NLRP6P59044 892 aa18.55■□□□□ 0.56
SCLT1-208ENST00000506368 RAD51AP2Q09MP3 1159 aa18.55■□□□□ 0.56
SCLT1-208ENST00000506368 ERCC6LQ2NKX8 1250 aa18.55■□□□□ 0.56
SCLT1-208ENST00000506368 DHX40Q8IX18 779 aaKnown RBP18.55■□□□□ 0.56
SCLT1-208ENST00000506368 PPP1R13BQ96KQ4 1090 aa18.55■□□□□ 0.56
SCLT1-208ENST00000506368 UBXN6Q9BZV1 441 aa18.55■□□□□ 0.56
SCLT1-208ENST00000506368 PSD3Q9NYI0 1048 aa18.55■□□□□ 0.56
SCLT1-208ENST00000506368 NOL12Q9UGY1 213 aaKnown RBP eCLIP18.55■□□□□ 0.56
SCLT1-208ENST00000506368 JCADQ9P266 1359 aa18.55■□□□□ 0.56
SCLT1-208ENST00000506368 EFCAB8A8MWE9 144 aa18.54■□□□□ 0.56
SCLT1-208ENST00000506368 KINO60870 393 aaKnown RBP18.54■□□□□ 0.56
SCLT1-208ENST00000506368 MTHFSDQ2M296 383 aaKnown RBP18.54■□□□□ 0.56
SCLT1-208ENST00000506368 CCDC158Q5M9N0 1113 aa18.54■□□□□ 0.56
SCLT1-208ENST00000506368 LLPHQ9BRT6 129 aaKnown RBP18.54■□□□□ 0.56
SCLT1-208ENST00000506368 TFIP11Q9UBB9 837 aaKnown RBP18.54■□□□□ 0.56
SCLT1-208ENST00000506368 RCOR1Q9UKL0 485 aa18.54■□□□□ 0.56
SCLT1-208ENST00000506368 SLC27A2O14975 620 aa18.54■□□□□ 0.56
SCLT1-208ENST00000506368 ARHGAP29Q52LW3 1261 aa18.54■□□□□ 0.56
SCLT1-208ENST00000506368 E4F1Q66K89 784 aaPredicted RBP18.54■□□□□ 0.56
SCLT1-208ENST00000506368 C11orf57Q6ZUT1 292 aaPredicted RBP18.54■□□□□ 0.56
SCLT1-208ENST00000506368 CHMP4CQ96CF2 233 aa18.54■□□□□ 0.56
SCLT1-208ENST00000506368 TRMT1Q9NXH9 659 aaKnown RBP18.54■□□□□ 0.56
SCLT1-208ENST00000506368 USP16Q9Y5T5 823 aa18.54■□□□□ 0.56
SCLT1-208ENST00000506368 ADCY9O60503 1353 aa18.53■□□□□ 0.56
SCLT1-208ENST00000506368 VGLL3A8MV65 326 aa18.53■□□□□ 0.56
SCLT1-208ENST00000506368 SFPQP23246 707 aaKnown RBP eCLIP18.53■□□□□ 0.56
SCLT1-208ENST00000506368 NAA16Q6N069 864 aaPredicted RBP18.53■□□□□ 0.56
SCLT1-208ENST00000506368 ORC3Q9UBD5 711 aaPredicted RBP18.53■□□□□ 0.56
SCLT1-208ENST00000506368 MED1Q15648 1581 aaPredicted RBP18.53■□□□□ 0.56
SCLT1-208ENST00000506368 ETF1P62495 437 aaKnown RBP18.53■□□□□ 0.56
SCLT1-208ENST00000506368 FAM173BQ6P4H8 233 aa18.53■□□□□ 0.56
SCLT1-208ENST00000506368 FCHSD1Q86WN1 690 aa18.53■□□□□ 0.56
SCLT1-208ENST00000506368 MIS18AQ9NYP9 233 aa18.53■□□□□ 0.56
SCLT1-208ENST00000506368 H3BQV1 296 aa18.52■□□□□ 0.56
SCLT1-208ENST00000506368 FAM160A1Q05DH4 1040 aa18.52■□□□□ 0.56
SCLT1-208ENST00000506368 IFFO2Q5TF58 517 aa18.52■□□□□ 0.56
SCLT1-208ENST00000506368 GTF3C6Q969F1 213 aa18.52■□□□□ 0.56
SCLT1-208ENST00000506368 AK7Q96M32 723 aa18.52■□□□□ 0.56
SCLT1-208ENST00000506368 ZNF396Q96N95 335 aaPredicted RBP18.52■□□□□ 0.56
SCLT1-208ENST00000506368 RASSF4Q9H2L5 321 aa18.52■□□□□ 0.56
SCLT1-208ENST00000506368 DNAI1Q9UI46 699 aa18.52■□□□□ 0.56
SCLT1-208ENST00000506368 NUTM2BA6NNL0 878 aaPredicted RBP18.51■□□□□ 0.55
SCLT1-208ENST00000506368 NUTM2EB1AL46 878 aaPredicted RBP18.51■□□□□ 0.55
SCLT1-208ENST00000506368 ARID5BQ14865 1188 aa18.51■□□□□ 0.55
SCLT1-208ENST00000506368 NUTM2AQ8IVF1 878 aaPredicted RBP18.51■□□□□ 0.55
SCLT1-208ENST00000506368 HOXB7P09629 217 aa18.51■□□□□ 0.55
SCLT1-208ENST00000506368 CCAR1Q8IX12 1150 aaKnown RBP18.51■□□□□ 0.55
SCLT1-208ENST00000506368 MNS1Q8NEH6 495 aa18.51■□□□□ 0.55
SCLT1-208ENST00000506368 TRIM34Q9BYJ4 488 aa18.51■□□□□ 0.55
SCLT1-208ENST00000506368 MAP3K19Q56UN5 1328 aa18.51■□□□□ 0.55
SCLT1-208ENST00000506368 ABCA3Q99758 1704 aa18.5■□□□□ 0.55
SCLT1-208ENST00000506368 TOB2Q14106 344 aaPredicted RBP18.5■□□□□ 0.55
SCLT1-208ENST00000506368 JAKMIP3Q5VZ66 844 aa18.5■□□□□ 0.55
SCLT1-208ENST00000506368 SYT10Q6XYQ8 523 aa18.5■□□□□ 0.55
SCLT1-208ENST00000506368 YY1AP1Q9H869 796 aa18.5■□□□□ 0.55
SCLT1-208ENST00000506368 ST7Q9NRC1 585 aa18.5■□□□□ 0.55
SCLT1-208ENST00000506368 FLT4P35916 1363 aa18.5■□□□□ 0.55
SCLT1-208ENST00000506368 GOLGA6L9A6NEM1 432 aa18.5■□□□□ 0.55
SCLT1-208ENST00000506368 IFIT2P09913 472 aaKnown RBP18.5■□□□□ 0.55
SCLT1-208ENST00000506368 OS9Q13438 667 aaPredicted RBP18.5■□□□□ 0.55
SCLT1-208ENST00000506368 LRRFIP1Q32MZ4 808 aaKnown RBP18.5■□□□□ 0.55
SCLT1-208ENST00000506368 IQUBQ8NA54 791 aa18.5■□□□□ 0.55
SCLT1-208ENST00000506368 TAF7LQ5H9L4 462 aa18.49■□□□□ 0.55
SCLT1-208ENST00000506368 IGSF1Q8N6C5 1336 aa18.49■□□□□ 0.55
SCLT1-208ENST00000506368 GOLGA5Q8TBA6 731 aa18.49■□□□□ 0.55
SCLT1-208ENST00000506368 EXOC4Q96A65 974 aa18.49■□□□□ 0.55
SCLT1-208ENST00000506368 COL22A1Q8NFW1 1626 aaPredicted RBP18.48■□□□□ 0.55
SCLT1-208ENST00000506368 PHRF1Q9P1Y6 1649 aaKnown RBP18.48■□□□□ 0.55
SCLT1-208ENST00000506368 MED23Q9ULK4 1368 aa18.48■□□□□ 0.55
SCLT1-208ENST00000506368 GNAT3A8MTJ3 354 aa18.48■□□□□ 0.55
SCLT1-208ENST00000506368 NBPF11Q86T75 865 aa18.48■□□□□ 0.55
SCLT1-208ENST00000506368 GPR161Q8N6U8 529 aaKnown RBP18.48■□□□□ 0.55
Retrieved 100 of 20,778 RNA–protein pairs in 47.7 ms