RNA–Protein interactions for RNA: ENST00000504663.1

TPM3-217, Transcript of tropomyosin 3, humanhuman

TSL 2

Gene TPM3, Length 870 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM3-217ENST00000504663 KIF13BQ9NQT8 1826 aa12.81□□□□□ -0.36
TPM3-217ENST00000504663 SERPINB2P05120 415 aa12.81□□□□□ -0.36
TPM3-217ENST00000504663 IFIT5Q13325 482 aaKnown RBP12.81□□□□□ -0.36
TPM3-217ENST00000504663 CCDC57Q2TAC2 916 aa12.81□□□□□ -0.36
TPM3-217ENST00000504663 TNNI3KQ59H18 835 aa12.81□□□□□ -0.36
TPM3-217ENST00000504663 PELP1Q8IZL8 1130 aaKnown RBP12.81□□□□□ -0.36
TPM3-217ENST00000504663 U3KPZ7 1027 aaPredicted RBP12.81□□□□□ -0.36
TPM3-217ENST00000504663 FPGT-TNNI3KV9GXZ4 949 aa12.81□□□□□ -0.36
TPM3-217ENST00000504663 ANKRD18BA2A2Z9 1011 aa12.8□□□□□ -0.36
TPM3-217ENST00000504663 KLRG2A4D1S0 409 aaPredicted RBP12.8□□□□□ -0.36
TPM3-217ENST00000504663 OS9Q13438 667 aaPredicted RBP12.8□□□□□ -0.36
TPM3-217ENST00000504663 CRY2Q49AN0 593 aa12.8□□□□□ -0.36
TPM3-217ENST00000504663 CCDC152Q4G0S7 254 aa12.8□□□□□ -0.36
TPM3-217ENST00000504663 SLC51AQ86UW1 340 aa12.8□□□□□ -0.36
TPM3-217ENST00000504663 RNF39Q9H2S5 420 aa12.8□□□□□ -0.36
TPM3-217ENST00000504663 STK32BQ9NY57 414 aa12.8□□□□□ -0.36
TPM3-217ENST00000504663 TPTE2Q6XPS3 522 aa12.79□□□□□ -0.36
TPM3-217ENST00000504663 AACSQ86V21 672 aa12.79□□□□□ -0.36
TPM3-217ENST00000504663 CCDC125Q86Z20 511 aa12.79□□□□□ -0.36
TPM3-217ENST00000504663 CNBD1Q8NA66 436 aa12.79□□□□□ -0.36
TPM3-217ENST00000504663 CELF1Q92879 486 aaKnown RBP12.79□□□□□ -0.36
TPM3-217ENST00000504663 UPF1Q92900 1129 aaKnown RBP eCLIP12.79□□□□□ -0.36
TPM3-217ENST00000504663 DBNDD2Q9BQY9 259 aa12.79□□□□□ -0.36
TPM3-217ENST00000504663 CCDC8Q9H0W5 538 aaPredicted RBP12.79□□□□□ -0.36
TPM3-217ENST00000504663 TTC41PQ6P2S7 1318 aa12.79□□□□□ -0.36
TPM3-217ENST00000504663 SEC24BO95487 1268 aa12.78□□□□□ -0.36
TPM3-217ENST00000504663 SDSP20132 328 aa12.78□□□□□ -0.36
TPM3-217ENST00000504663 FGFR2P21802 821 aa12.78□□□□□ -0.36
TPM3-217ENST00000504663 CLASRPQ8N2M8 674 aaKnown RBP12.78□□□□□ -0.36
TPM3-217ENST00000504663 NLGN1Q8N2Q7 840 aa12.78□□□□□ -0.36
TPM3-217ENST00000504663 C10orf71Q711Q0 1435 aa12.78□□□□□ -0.36
TPM3-217ENST00000504663 DOCK2Q92608 1830 aa12.77□□□□□ -0.37
TPM3-217ENST00000504663 CACNA1SQ13698 1873 aa12.77□□□□□ -0.37
TPM3-217ENST00000504663 MMP10P09238 476 aa12.77□□□□□ -0.37
TPM3-217ENST00000504663 HSP90B1P14625 803 aaKnown RBP12.77□□□□□ -0.37
TPM3-217ENST00000504663 SF3B2Q13435 895 aaKnown RBP12.77□□□□□ -0.37
TPM3-217ENST00000504663 MSL1Q68DK7 614 aa12.77□□□□□ -0.37
TPM3-217ENST00000504663 DUOX1Q9NRD9 1551 aa12.77□□□□□ -0.37
TPM3-217ENST00000504663 A0A1B0GUL7 405 aa12.76□□□□□ -0.37
TPM3-217ENST00000504663 ADORA1P30542 326 aa12.76□□□□□ -0.37
TPM3-217ENST00000504663 LDHAL6AQ6ZMR3 332 aa12.76□□□□□ -0.37
TPM3-217ENST00000504663 ECHDC1Q9NTX5 307 aa12.76□□□□□ -0.37
TPM3-217ENST00000504663 IRS2Q9Y4H2 1338 aa12.76□□□□□ -0.37
TPM3-217ENST00000504663 HOXA10P31260 410 aaPredicted RBP12.75□□□□□ -0.37
TPM3-217ENST00000504663 TIMM10P62072 90 aa12.75□□□□□ -0.37
TPM3-217ENST00000504663 TAF7LQ5H9L4 462 aa12.75□□□□□ -0.37
TPM3-217ENST00000504663 TBC1D9Q6ZT07 1266 aa12.75□□□□□ -0.37
TPM3-217ENST00000504663 ERICH6Q7L0X2 663 aa12.75□□□□□ -0.37
TPM3-217ENST00000504663 NLRP3Q96P20 1036 aa12.75□□□□□ -0.37
TPM3-217ENST00000504663 BCL11AQ9H165 835 aa12.75□□□□□ -0.37
TPM3-217ENST00000504663 ZNF219Q9P2Y4 722 aaPredicted RBP12.75□□□□□ -0.37
TPM3-217ENST00000504663 ZBTB47Q9UFB7 747 aaPredicted RBP12.75□□□□□ -0.37
TPM3-217ENST00000504663 MYO5AQ9Y4I1 1855 aaKnown RBP12.75□□□□□ -0.37
TPM3-217ENST00000504663 SNED1Q8TER0 1413 aa12.74□□□□□ -0.37
TPM3-217ENST00000504663 MROH5Q6ZUA9 1318 aa12.74□□□□□ -0.37
TPM3-217ENST00000504663 SNAP23O00161 211 aa12.74□□□□□ -0.37
TPM3-217ENST00000504663 PDE8BO95263 885 aa12.74□□□□□ -0.37
TPM3-217ENST00000504663 IFIT2P09913 472 aaKnown RBP12.74□□□□□ -0.37
TPM3-217ENST00000504663 CHRNDQ07001 517 aa12.74□□□□□ -0.37
TPM3-217ENST00000504663 METTL24Q5JXM2 366 aa12.74□□□□□ -0.37
TPM3-217ENST00000504663 CDC5LQ99459 802 aaKnown RBP12.74□□□□□ -0.37
TPM3-217ENST00000504663 BSDC1Q9NW68 430 aaPredicted RBP12.74□□□□□ -0.37
TPM3-217ENST00000504663 CEP126Q9P2H0 1117 aa12.74□□□□□ -0.37
TPM3-217ENST00000504663 MYH7P12883 1935 aa12.74□□□□□ -0.37
TPM3-217ENST00000504663 BRCA1P38398 1863 aaKnown RBP12.74□□□□□ -0.37
TPM3-217ENST00000504663 COL1A1P02452 1464 aaPredicted RBP12.73□□□□□ -0.37
TPM3-217ENST00000504663 WTIPA6NIX2 430 aaPredicted RBP12.73□□□□□ -0.37
TPM3-217ENST00000504663 GLRX3O76003 335 aaKnown RBP12.73□□□□□ -0.37
TPM3-217ENST00000504663 ATP5JP18859 108 aa12.73□□□□□ -0.37
TPM3-217ENST00000504663 GTF2E1P29083 439 aaPredicted RBP12.73□□□□□ -0.37
TPM3-217ENST00000504663 ST5P78524 1137 aa12.73□□□□□ -0.37
TPM3-217ENST00000504663 GRAPQ13588 217 aa12.73□□□□□ -0.37
TPM3-217ENST00000504663 ATP2B3Q16720 1220 aa12.73□□□□□ -0.37
TPM3-217ENST00000504663 HELBQ8NG08 1087 aaPredicted RBP12.73□□□□□ -0.37
TPM3-217ENST00000504663 GRAPLQ8TC17 118 aaPredicted RBP12.73□□□□□ -0.37
TPM3-217ENST00000504663 XAGE2Q96GT9 111 aa12.73□□□□□ -0.37
TPM3-217ENST00000504663 IL25Q9H293 177 aa12.73□□□□□ -0.37
TPM3-217ENST00000504663 CNNM1Q9NRU3 951 aa12.73□□□□□ -0.37
TPM3-217ENST00000504663 MINPP1Q9UNW1 487 aa12.73□□□□□ -0.37
TPM3-217ENST00000504663 ZNF646O15015 1829 aaPredicted RBP12.73□□□□□ -0.37
TPM3-217ENST00000504663 CDC45O75419 566 aa12.72□□□□□ -0.37
TPM3-217ENST00000504663 TAF5LO75529 589 aa12.72□□□□□ -0.37
TPM3-217ENST00000504663 IGHMBP2P38935 993 aaKnown RBP12.72□□□□□ -0.37
TPM3-217ENST00000504663 ANKRD18AQ8IVF6 992 aa12.72□□□□□ -0.37
TPM3-217ENST00000504663 BRIP1Q9BX63 1249 aa12.72□□□□□ -0.37
TPM3-217ENST00000504663 MYH13Q9UKX3 1938 aa12.72□□□□□ -0.37
TPM3-217ENST00000504663 SLX4Q8IY92 1834 aa12.72□□□□□ -0.37
TPM3-217ENST00000504663 MAP4K4O95819 1239 aaPredicted RBP12.71□□□□□ -0.37
TPM3-217ENST00000504663 RPS8P62241 208 aaKnown RBP12.71□□□□□ -0.37
TPM3-217ENST00000504663 SCARF1Q14162 830 aa12.71□□□□□ -0.37
TPM3-217ENST00000504663 PUM3Q15397 648 aaKnown RBP12.71□□□□□ -0.37
TPM3-217ENST00000504663 PPIL4Q8WUA2 492 aaKnown RBP eCLIP12.71□□□□□ -0.37
TPM3-217ENST00000504663 EDC3Q96F86 508 aaKnown RBP12.71□□□□□ -0.37
TPM3-217ENST00000504663 AKAP2Q9Y2D5 859 aa12.71□□□□□ -0.37
TPM3-217ENST00000504663 RBM19Q9Y4C8 960 aaKnown RBP12.71□□□□□ -0.37
TPM3-217ENST00000504663 NDUFB9Q9Y6M9 179 aa12.71□□□□□ -0.37
TPM3-217ENST00000504663 RFX7Q2KHR2 1363 aa12.7□□□□□ -0.38
TPM3-217ENST00000504663 ZNF804BA4D1E1 1349 aa12.7□□□□□ -0.38
TPM3-217ENST00000504663 SRGNP10124 158 aa12.7□□□□□ -0.38
TPM3-217ENST00000504663 CHMLP26374 656 aa12.7□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 60.3 ms