RNA–Protein interactions for RNA: ENST00000504173.1

NUP54-203, Transcript of nucleoporin 54, humanhuman

TSL 3

Gene NUP54, Length 314 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-203ENST00000504173 PANK1Q8TE04 598 aa12.63□□□□□ -0.39
NUP54-203ENST00000504173 H7C1W4 665 aa12.62□□□□□ -0.39
NUP54-203ENST00000504173 RLBP1P12271 317 aa12.62□□□□□ -0.39
NUP54-203ENST00000504173 HSP90B1P14625 803 aaKnown RBP12.62□□□□□ -0.39
NUP54-203ENST00000504173 SAPCD2Q86UD0 394 aa12.62□□□□□ -0.39
NUP54-203ENST00000504173 ITPRIPQ8IWB1 547 aa12.62□□□□□ -0.39
NUP54-203ENST00000504173 BRIP1Q9BX63 1249 aa12.62□□□□□ -0.39
NUP54-203ENST00000504173 CDHR2Q9BYE9 1310 aa12.62□□□□□ -0.39
NUP54-203ENST00000504173 HCLS1P14317 486 aaPredicted RBP12.61□□□□□ -0.39
NUP54-203ENST00000504173 PDE6BP35913 854 aa12.61□□□□□ -0.39
NUP54-203ENST00000504173 FMR1Q06787 632 aaKnown RBP eCLIP12.61□□□□□ -0.39
NUP54-203ENST00000504173 PDE3AQ14432 1141 aa12.61□□□□□ -0.39
NUP54-203ENST00000504173 SLC10A5Q5PT55 438 aa12.61□□□□□ -0.39
NUP54-203ENST00000504173 CIAPIN1Q6FI81 312 aa12.61□□□□□ -0.39
NUP54-203ENST00000504173 SAGE1Q9NXZ1 904 aa12.61□□□□□ -0.39
NUP54-203ENST00000504173 SUPT16HQ9Y5B9 1047 aaKnown RBP12.61□□□□□ -0.39
NUP54-203ENST00000504173 TRPM7Q96QT4 1865 aa12.61□□□□□ -0.39
NUP54-203ENST00000504173 RIC1Q4ADV7 1423 aa12.61□□□□□ -0.39
NUP54-203ENST00000504173 ANKRD31Q8N7Z5 1873 aa12.6□□□□□ -0.39
NUP54-203ENST00000504173 NBPF7P0C2Y1 421 aaPredicted RBP12.6□□□□□ -0.39
NUP54-203ENST00000504173 CASP7P55210 303 aa12.6□□□□□ -0.39
NUP54-203ENST00000504173 C20orf194Q5TEA3 1177 aa12.6□□□□□ -0.39
NUP54-203ENST00000504173 ZNF622Q969S3 477 aaKnown RBP eCLIP12.6□□□□□ -0.39
NUP54-203ENST00000504173 NLRP3Q96P20 1036 aa12.6□□□□□ -0.39
NUP54-203ENST00000504173 USP44Q9H0E7 712 aa12.6□□□□□ -0.39
NUP54-203ENST00000504173 LAMB2P55268 1798 aa12.6□□□□□ -0.39
NUP54-203ENST00000504173 FZD9O00144 591 aa12.59□□□□□ -0.39
NUP54-203ENST00000504173 PDE8AO60658 829 aa12.59□□□□□ -0.39
NUP54-203ENST00000504173 UBTFL1P0CB47 393 aaPredicted RBP12.59□□□□□ -0.39
NUP54-203ENST00000504173 GPC2Q8N158 579 aa12.59□□□□□ -0.39
NUP54-203ENST00000504173 MEIS3Q99687 375 aa12.59□□□□□ -0.39
NUP54-203ENST00000504173 COG6Q9Y2V7 657 aa12.59□□□□□ -0.39
NUP54-203ENST00000504173 COL11A2P13942 1736 aaPredicted RBP12.59□□□□□ -0.39
NUP54-203ENST00000504173 DDX60Q8IY21 1712 aaKnown RBP12.59□□□□□ -0.39
NUP54-203ENST00000504173 UTYO14607 1347 aa12.59□□□□□ -0.39
NUP54-203ENST00000504173 GNAI3P08754 354 aa12.58□□□□□ -0.4
NUP54-203ENST00000504173 CTSWP56202 376 aa12.58□□□□□ -0.4
NUP54-203ENST00000504173 NOGQ13253 232 aa12.58□□□□□ -0.4
NUP54-203ENST00000504173 MVPQ14764 893 aaKnown RBP12.58□□□□□ -0.4
NUP54-203ENST00000504173 C3orf67Q6ZVT6 689 aa12.58□□□□□ -0.4
NUP54-203ENST00000504173 CTU1Q7Z7A3 348 aaKnown RBP12.58□□□□□ -0.4
NUP54-203ENST00000504173 RPGRQ92834 1020 aaKnown RBP12.58□□□□□ -0.4
NUP54-203ENST00000504173 CNKSR1Q969H4 720 aa12.58□□□□□ -0.4
NUP54-203ENST00000504173 SUCLG2Q96I99 432 aa12.58□□□□□ -0.4
NUP54-203ENST00000504173 PLA2G12BQ9BX93 195 aa12.58□□□□□ -0.4
NUP54-203ENST00000504173 DDX19BQ9UMR2 479 aa12.58□□□□□ -0.4
NUP54-203ENST00000504173 KLRG2A4D1S0 409 aaPredicted RBP12.57□□□□□ -0.4
NUP54-203ENST00000504173 PRPF40BQ6NWY9 871 aaKnown RBP12.57□□□□□ -0.4
NUP54-203ENST00000504173 HPS5Q9UPZ3 1129 aa12.57□□□□□ -0.4
NUP54-203ENST00000504173 HDAC5Q9UQL6 1122 aa12.57□□□□□ -0.4
NUP54-203ENST00000504173 TRAF5O00463 557 aa12.56□□□□□ -0.4
NUP54-203ENST00000504173 SRGNP10124 158 aa12.56□□□□□ -0.4
NUP54-203ENST00000504173 NPR1P16066 1061 aa12.56□□□□□ -0.4
NUP54-203ENST00000504173 SF3B3Q15393 1217 aaKnown RBP12.56□□□□□ -0.4
NUP54-203ENST00000504173 CRY2Q49AN0 593 aa12.56□□□□□ -0.4
NUP54-203ENST00000504173 CCDC152Q4G0S7 254 aa12.56□□□□□ -0.4
NUP54-203ENST00000504173 STYK1Q6J9G0 422 aa12.56□□□□□ -0.4
NUP54-203ENST00000504173 C7orf43Q8WVR3 580 aa12.56□□□□□ -0.4
NUP54-203ENST00000504173 MASTLQ96GX5 879 aa12.56□□□□□ -0.4
NUP54-203ENST00000504173 CCDC85AQ96PX6 553 aaPredicted RBP12.56□□□□□ -0.4
NUP54-203ENST00000504173 CHMP4BQ9H444 224 aaKnown RBP12.56□□□□□ -0.4
NUP54-203ENST00000504173 CHMP3Q9Y3E7 222 aa12.56□□□□□ -0.4
NUP54-203ENST00000504173 LRRFIP2Q9Y608 721 aaKnown RBP12.56□□□□□ -0.4
NUP54-203ENST00000504173 SLX4Q8IY92 1834 aa12.55□□□□□ -0.4
NUP54-203ENST00000504173 MYH3P11055 1940 aa12.55□□□□□ -0.4
NUP54-203ENST00000504173 ZBTB7BO15156 539 aaPredicted RBP12.55□□□□□ -0.4
NUP54-203ENST00000504173 GNAI2P04899 355 aa12.55□□□□□ -0.4
NUP54-203ENST00000504173 FKBP4Q02790 459 aaKnown RBP eCLIP12.55□□□□□ -0.4
NUP54-203ENST00000504173 EPHA10Q5JZY3 1008 aa12.55□□□□□ -0.4
NUP54-203ENST00000504173 DDX46Q7L014 1031 aaKnown RBP12.55□□□□□ -0.4
NUP54-203ENST00000504173 TTLL11Q8NHH1 800 aa12.55□□□□□ -0.4
NUP54-203ENST00000504173 RBM17Q96I25 401 aaKnown RBP12.55□□□□□ -0.4
NUP54-203ENST00000504173 BICC1Q9H694 974 aaKnown RBP12.55□□□□□ -0.4
NUP54-203ENST00000504173 MKI67P46013 3256 aaKnown RBP12.54□□□□□ -0.4
NUP54-203ENST00000504173 FOXO4P98177 505 aa12.54□□□□□ -0.4
NUP54-203ENST00000504173 PKN2Q16513 984 aaKnown RBP12.54□□□□□ -0.4
NUP54-203ENST00000504173 CCDC93Q567U6 631 aa12.54□□□□□ -0.4
NUP54-203ENST00000504173 LMBR1LQ6UX01 489 aa12.54□□□□□ -0.4
NUP54-203ENST00000504173 USP50Q70EL3 339 aaPredicted RBP12.54□□□□□ -0.4
NUP54-203ENST00000504173 KAZALD1Q96I82 304 aa12.54□□□□□ -0.4
NUP54-203ENST00000504173 CRBNQ96SW2 442 aa12.54□□□□□ -0.4
NUP54-203ENST00000504173 ZIC5Q96T25 663 aa12.54□□□□□ -0.4
NUP54-203ENST00000504173 SZT2Q5T011 3432 aa12.53□□□□□ -0.4
NUP54-203ENST00000504173 CELF2O95319 508 aaKnown RBP12.53□□□□□ -0.4
NUP54-203ENST00000504173 CSF1RP07333 972 aa12.53□□□□□ -0.4
NUP54-203ENST00000504173 ALDH1B1P30837 517 aa12.53□□□□□ -0.4
NUP54-203ENST00000504173 HOXA10P31260 410 aaPredicted RBP12.53□□□□□ -0.4
NUP54-203ENST00000504173 ANKRD44Q8N8A2 993 aa12.53□□□□□ -0.4
NUP54-203ENST00000504173 SLC17A8Q8NDX2 589 aa12.53□□□□□ -0.4
NUP54-203ENST00000504173 CRAMP1Q96RY5 1269 aa12.53□□□□□ -0.4
NUP54-203ENST00000504173 GREM2Q9H772 168 aa12.53□□□□□ -0.4
NUP54-203ENST00000504173 C1orf115Q9H7X2 142 aa12.53□□□□□ -0.4
NUP54-203ENST00000504173 ITGA6P23229 1130 aa12.52□□□□□ -0.41
NUP54-203ENST00000504173 LMOD1P29536 600 aaPredicted RBP12.52□□□□□ -0.41
NUP54-203ENST00000504173 SCNN1DP51172 638 aa12.52□□□□□ -0.41
NUP54-203ENST00000504173 GRAPQ13588 217 aa12.52□□□□□ -0.41
NUP54-203ENST00000504173 RABL6Q3YEC7 729 aaPredicted RBP12.52□□□□□ -0.41
NUP54-203ENST00000504173 GRAPLQ8TC17 118 aaPredicted RBP12.52□□□□□ -0.41
NUP54-203ENST00000504173 CDC5LQ99459 802 aaKnown RBP12.52□□□□□ -0.41
NUP54-203ENST00000504173 SEC31BQ9NQW1 1179 aa12.52□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 40.8 ms