RNA–Protein interactions for RNA: ENST00000503942.1

UBE3D-205, Transcript of ubiquitin protein ligase E3D, humanhuman

TSL 3

Gene UBE3D, Length 646 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBE3D-205ENST00000503942 PROSER2Q86WR7 435 aaPredicted RBP8.69□□□□□ -1.02
UBE3D-205ENST00000503942 USP20Q9Y2K6 914 aa8.69□□□□□ -1.02
UBE3D-205ENST00000503942 ARID1BQ8NFD5 2236 aaPredicted RBP8.69□□□□□ -1.02
UBE3D-205ENST00000503942 MMP20O60882 483 aa8.68□□□□□ -1.02
UBE3D-205ENST00000503942 TAL1P17542 331 aaPredicted RBP8.68□□□□□ -1.02
UBE3D-205ENST00000503942 ANKMY2Q8IV38 441 aa8.68□□□□□ -1.02
UBE3D-205ENST00000503942 UBL7Q96S82 380 aaPredicted RBP8.68□□□□□ -1.02
UBE3D-205ENST00000503942 STOML1Q9UBI4 398 aa8.68□□□□□ -1.02
UBE3D-205ENST00000503942 ARID3CA6NKF2 412 aa8.67□□□□□ -1.02
UBE3D-205ENST00000503942 USP17L15C9J2P7 530 aa8.67□□□□□ -1.02
UBE3D-205ENST00000503942 USP17L10C9JJH3 530 aa8.67□□□□□ -1.02
UBE3D-205ENST00000503942 USP17L13C9JLJ4 530 aa8.67□□□□□ -1.02
UBE3D-205ENST00000503942 USP17L12C9JPN9 530 aa8.67□□□□□ -1.02
UBE3D-205ENST00000503942 USP17L11C9JVI0 530 aa8.67□□□□□ -1.02
UBE3D-205ENST00000503942 USP17L21D6R901 530 aa8.67□□□□□ -1.02
UBE3D-205ENST00000503942 USP17L18D6R9N7 530 aa8.67□□□□□ -1.02
UBE3D-205ENST00000503942 USP17L22D6RA61 530 aa8.67□□□□□ -1.02
UBE3D-205ENST00000503942 USP17L17D6RBQ6 530 aa8.67□□□□□ -1.02
UBE3D-205ENST00000503942 USP17L19D6RCP7 530 aa8.67□□□□□ -1.02
UBE3D-205ENST00000503942 USP17L20D6RJB6 530 aa8.67□□□□□ -1.02
UBE3D-205ENST00000503942 USP17L24Q0WX57 530 aa8.67□□□□□ -1.02
UBE3D-205ENST00000503942 KANK4Q5T7N3 995 aaPredicted RBP8.67□□□□□ -1.02
UBE3D-205ENST00000503942 ZDHHC13Q8IUH4 622 aa8.67□□□□□ -1.02
UBE3D-205ENST00000503942 CACTIN-AS1Q8N1I8 211 aa8.67□□□□□ -1.02
UBE3D-205ENST00000503942 GLMNQ92990 594 aa8.67□□□□□ -1.02
UBE3D-205ENST00000503942 MUC3BQ9H195 1237 aa8.67□□□□□ -1.02
UBE3D-205ENST00000503942 RBSNQ9H1K0 784 aa8.67□□□□□ -1.02
UBE3D-205ENST00000503942 TRIM33Q9UPN9 1127 aa8.67□□□□□ -1.02
UBE3D-205ENST00000503942 FAM196BA6NMK8 535 aa8.66□□□□□ -1.02
UBE3D-205ENST00000503942 DHX15O43143 795 aaKnown RBP8.66□□□□□ -1.02
UBE3D-205ENST00000503942 SPINK2P20155 84 aa8.66□□□□□ -1.02
UBE3D-205ENST00000503942 RGL4Q8IZJ4 473 aa8.66□□□□□ -1.02
UBE3D-205ENST00000503942 KCNMB2Q9Y691 235 aa8.66□□□□□ -1.02
UBE3D-205ENST00000503942 CMTR1Q8N1G2 835 aaKnown RBP8.65□□□□□ -1.02
UBE3D-205ENST00000503942 ARMC10Q8N2F6 343 aa8.65□□□□□ -1.02
UBE3D-205ENST00000503942 VTI1AQ96AJ9 217 aa8.65□□□□□ -1.02
UBE3D-205ENST00000503942 LRFN2Q9ULH4 789 aa8.65□□□□□ -1.02
UBE3D-205ENST00000503942 PPME1Q9Y570 386 aa8.65□□□□□ -1.02
UBE3D-205ENST00000503942 NFIAQ12857 509 aa8.64□□□□□ -1.03
UBE3D-205ENST00000503942 UVSSAQ2YD98 709 aa8.64□□□□□ -1.03
UBE3D-205ENST00000503942 TREML1Q86YW5 311 aa8.64□□□□□ -1.03
UBE3D-205ENST00000503942 GALNT11Q8NCW6 608 aa8.64□□□□□ -1.03
UBE3D-205ENST00000503942 CEP41Q9BYV8 373 aa8.64□□□□□ -1.03
UBE3D-205ENST00000503942 ADAMTS4O75173 837 aa8.63□□□□□ -1.03
UBE3D-205ENST00000503942 WISP1O95388 367 aa8.63□□□□□ -1.03
UBE3D-205ENST00000503942 INTS5Q6P9B9 1019 aaKnown RBP8.63□□□□□ -1.03
UBE3D-205ENST00000503942 ARXQ96QS3 562 aa8.63□□□□□ -1.03
UBE3D-205ENST00000503942 RNF114Q9Y508 228 aa8.63□□□□□ -1.03
UBE3D-205ENST00000503942 GRIK1P39086 918 aa8.62□□□□□ -1.03
UBE3D-205ENST00000503942 C7orf69Q9H7B7 122 aa8.62□□□□□ -1.03
UBE3D-205ENST00000503942 ZNF777Q9ULD5 760 aaPredicted RBP8.62□□□□□ -1.03
UBE3D-205ENST00000503942 ACAD11Q709F0 780 aa8.61□□□□□ -1.03
UBE3D-205ENST00000503942 DTX1Q86Y01 620 aa8.61□□□□□ -1.03
UBE3D-205ENST00000503942 UTP4Q969X6 686 aaKnown RBP8.61□□□□□ -1.03
UBE3D-205ENST00000503942 FAM46AQ96IP4 442 aaKnown RBP8.61□□□□□ -1.03
UBE3D-205ENST00000503942 PPP1R12CQ9BZL4 782 aa8.61□□□□□ -1.03
UBE3D-205ENST00000503942 UTP3Q9NQZ2 479 aaKnown RBP eCLIP8.61□□□□□ -1.03
UBE3D-205ENST00000503942 TM4SF5O14894 197 aa8.6□□□□□ -1.03
UBE3D-205ENST00000503942 CD68P34810 354 aaPredicted RBP8.6□□□□□ -1.03
UBE3D-205ENST00000503942 RNF43Q68DV7 783 aa8.6□□□□□ -1.03
UBE3D-205ENST00000503942 NLRP13Q86W25 1043 aa8.6□□□□□ -1.03
UBE3D-205ENST00000503942 DBNDD2Q9BQY9 259 aa8.6□□□□□ -1.03
UBE3D-205ENST00000503942 PRR19A6NJB7 356 aa8.59□□□□□ -1.03
UBE3D-205ENST00000503942 LINC01387J3KSC0 135 aa8.59□□□□□ -1.03
UBE3D-205ENST00000503942 TRIP4Q15650 581 aaPredicted RBP8.59□□□□□ -1.03
UBE3D-205ENST00000503942 TRIM42Q8IWZ5 723 aa8.59□□□□□ -1.03
UBE3D-205ENST00000503942 KCNK4Q9NYG8 393 aa8.59□□□□□ -1.03
UBE3D-205ENST00000503942 HMX2A2RU54 273 aa8.58□□□□□ -1.04
UBE3D-205ENST00000503942 COX20Q5RI15 118 aa8.58□□□□□ -1.04
UBE3D-205ENST00000503942 LCE1DQ5T752 114 aa8.58□□□□□ -1.04
UBE3D-205ENST00000503942 KIAA1211Q6ZU35 1233 aa8.58□□□□□ -1.04
UBE3D-205ENST00000503942 MYRFLQ96LU7 910 aa8.58□□□□□ -1.04
UBE3D-205ENST00000503942 VRTNQ9H8Y1 702 aa8.58□□□□□ -1.04
UBE3D-205ENST00000503942 ATP11AP98196 1134 aa8.57□□□□□ -1.04
UBE3D-205ENST00000503942 TXNDC11Q6PKC3 985 aa8.57□□□□□ -1.04
UBE3D-205ENST00000503942 ETFBKMTQ8IXQ9 262 aa8.57□□□□□ -1.04
UBE3D-205ENST00000503942 OR13H1Q8NG92 308 aa8.57□□□□□ -1.04
UBE3D-205ENST00000503942 KRTAP4-7Q9BYR0 210 aa8.57□□□□□ -1.04
UBE3D-205ENST00000503942 COL13A1Q5TAT6 717 aaPredicted RBP8.56□□□□□ -1.04
UBE3D-205ENST00000503942 LACRTQ9GZZ8 138 aa8.56□□□□□ -1.04
UBE3D-205ENST00000503942 WNT11O96014 354 aa8.55□□□□□ -1.04
UBE3D-205ENST00000503942 CDC27P30260 824 aa8.55□□□□□ -1.04
UBE3D-205ENST00000503942 HYAL2Q12891 473 aa8.55□□□□□ -1.04
UBE3D-205ENST00000503942 FKBP5Q13451 457 aaPredicted RBP8.55□□□□□ -1.04
UBE3D-205ENST00000503942 KLHL23Q8NBE8 558 aa8.55□□□□□ -1.04
UBE3D-205ENST00000503942 CARD10Q9BWT7 1032 aa8.55□□□□□ -1.04
UBE3D-205ENST00000503942 FSCN2O14926 492 aa8.54□□□□□ -1.04
UBE3D-205ENST00000503942 SMNDC1O75940 238 aaKnown RBP eCLIP8.54□□□□□ -1.04
UBE3D-205ENST00000503942 LMOD1P29536 600 aaPredicted RBP8.54□□□□□ -1.04
UBE3D-205ENST00000503942 CEP135Q66GS9 1140 aa8.54□□□□□ -1.04
UBE3D-205ENST00000503942 FAM20CQ8IXL6 584 aa8.54□□□□□ -1.04
UBE3D-205ENST00000503942 CCDC82Q8N4S0 544 aa8.54□□□□□ -1.04
UBE3D-205ENST00000503942 ARID3AQ99856 593 aa8.54□□□□□ -1.04
UBE3D-205ENST00000503942 FZD5Q13467 585 aa8.53□□□□□ -1.04
UBE3D-205ENST00000503942 DUOXA2Q1HG44 320 aa8.53□□□□□ -1.04
UBE3D-205ENST00000503942 ADAMTSL4Q6UY14 1074 aa8.53□□□□□ -1.04
UBE3D-205ENST00000503942 PPP1R3FQ6ZSY5 799 aaPredicted RBP8.53□□□□□ -1.04
UBE3D-205ENST00000503942 CLEC10AQ8IUN9 316 aa8.53□□□□□ -1.04
UBE3D-205ENST00000503942 FOXD4L4Q8WXT5 416 aaPredicted RBP8.53□□□□□ -1.04
UBE3D-205ENST00000503942 SPACA7Q96KW9 195 aa8.53□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 27.2 ms