RNA–Protein interactions for RNA: ENST00000497977.1

PTPRN-218, Transcript of protein tyrosine phosphatase, receptor type N, humanhuman

TSL 3

Gene PTPRN, Length 701 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRN-218ENST00000497977 ZKSCAN2Q63HK3 967 aa13.02□□□□□ -0.33
PTPRN-218ENST00000497977 CHMP4BQ9H444 224 aaKnown RBP13.02□□□□□ -0.33
PTPRN-218ENST00000497977 CLEC11AQ9Y240 323 aa13.02□□□□□ -0.33
PTPRN-218ENST00000497977 UTYO14607 1347 aa13.02□□□□□ -0.33
PTPRN-218ENST00000497977 N4BP2Q86UW6 1770 aaPredicted RBP13.02□□□□□ -0.33
PTPRN-218ENST00000497977 AFDNP55196 1824 aaKnown RBP13.02□□□□□ -0.33
PTPRN-218ENST00000497977 RPS12P25398 132 aaKnown RBP13.01□□□□□ -0.33
PTPRN-218ENST00000497977 FOXO4P98177 505 aa13.01□□□□□ -0.33
PTPRN-218ENST00000497977 ATF7IPQ6VMQ6 1270 aa13.01□□□□□ -0.33
PTPRN-218ENST00000497977 POLLQ9UGP5 575 aa13.01□□□□□ -0.33
PTPRN-218ENST00000497977 CACNA1FO60840 1977 aa13.01□□□□□ -0.33
PTPRN-218ENST00000497977 NBPF7P0C2Y1 421 aaPredicted RBP13□□□□□ -0.33
PTPRN-218ENST00000497977 CXCL9Q07325 125 aa13□□□□□ -0.33
PTPRN-218ENST00000497977 INTS3Q68E01 1043 aaKnown RBP13□□□□□ -0.33
PTPRN-218ENST00000497977 USP50Q70EL3 339 aaPredicted RBP13□□□□□ -0.33
PTPRN-218ENST00000497977 FTSJ3Q8IY81 847 aaKnown RBP13□□□□□ -0.33
PTPRN-218ENST00000497977 GOLGA6L2Q8N9W4 650 aaPredicted RBP13□□□□□ -0.33
PTPRN-218ENST00000497977 DPF2Q92785 391 aa13□□□□□ -0.33
PTPRN-218ENST00000497977 USP44Q9H0E7 712 aa13□□□□□ -0.33
PTPRN-218ENST00000497977 MROH5Q6ZUA9 1318 aa12.99□□□□□ -0.33
PTPRN-218ENST00000497977 EPHX2P34913 555 aa12.99□□□□□ -0.33
PTPRN-218ENST00000497977 FAM161AQ3B820 660 aa12.99□□□□□ -0.33
PTPRN-218ENST00000497977 LDHDQ86WU2 507 aa12.99□□□□□ -0.33
PTPRN-218ENST00000497977 COA1Q9GZY4 146 aa12.99□□□□□ -0.33
PTPRN-218ENST00000497977 TAF1DQ9H5J8 278 aaPredicted RBP12.99□□□□□ -0.33
PTPRN-218ENST00000497977 FBXO3Q9UK99 471 aa12.99□□□□□ -0.33
PTPRN-218ENST00000497977 CHD4Q14839 1912 aa12.98□□□□□ -0.33
PTPRN-218ENST00000497977 ZNF804BA4D1E1 1349 aa12.98□□□□□ -0.33
PTPRN-218ENST00000497977 NUP98P52948 1817 aa12.98□□□□□ -0.33
PTPRN-218ENST00000497977 HSPA6P17066 643 aa12.98□□□□□ -0.33
PTPRN-218ENST00000497977 APLP1P51693 650 aa12.98□□□□□ -0.33
PTPRN-218ENST00000497977 EAPPQ56P03 285 aaPredicted RBP12.98□□□□□ -0.33
PTPRN-218ENST00000497977 CHADLQ6NUI6 762 aa12.98□□□□□ -0.33
PTPRN-218ENST00000497977 OGFOD1Q8N543 542 aa12.98□□□□□ -0.33
PTPRN-218ENST00000497977 ADARB2Q9NS39 739 aaKnown RBP12.98□□□□□ -0.33
PTPRN-218ENST00000497977 ECE2O60344 883 aa12.97□□□□□ -0.33
PTPRN-218ENST00000497977 BCAR3O75815 825 aa12.97□□□□□ -0.33
PTPRN-218ENST00000497977 RAD17O75943 681 aa12.97□□□□□ -0.33
PTPRN-218ENST00000497977 CHRNDQ07001 517 aa12.97□□□□□ -0.33
PTPRN-218ENST00000497977 DOK7Q18PE1 504 aa12.97□□□□□ -0.33
PTPRN-218ENST00000497977 RABL6Q3YEC7 729 aaPredicted RBP12.97□□□□□ -0.33
PTPRN-218ENST00000497977 SUCLG2Q96I99 432 aa12.97□□□□□ -0.33
PTPRN-218ENST00000497977 KIAA1551Q9HCM1 1747 aa12.96□□□□□ -0.33
PTPRN-218ENST00000497977 USP17L3A6NCW0 530 aa12.96□□□□□ -0.33
PTPRN-218ENST00000497977 USP17L4A6NCW7 530 aa12.96□□□□□ -0.33
PTPRN-218ENST00000497977 PLIN1O60240 522 aa12.96□□□□□ -0.33
PTPRN-218ENST00000497977 UBE4AQ14139 1066 aa12.96□□□□□ -0.33
PTPRN-218ENST00000497977 CAVIN4Q5BKX8 364 aa12.96□□□□□ -0.33
PTPRN-218ENST00000497977 USP17L1Q7RTZ2 530 aa12.96□□□□□ -0.33
PTPRN-218ENST00000497977 ZNF804AQ7Z570 1209 aa12.96□□□□□ -0.33
PTPRN-218ENST00000497977 VPS37DQ86XT2 251 aa12.96□□□□□ -0.33
PTPRN-218ENST00000497977 DZIP1LQ8IYY4 767 aaKnown RBP12.96□□□□□ -0.33
PTPRN-218ENST00000497977 AGBL3Q8NEM8 1001 aa12.96□□□□□ -0.33
PTPRN-218ENST00000497977 ZC3H15Q8WU90 426 aaKnown RBP12.96□□□□□ -0.33
PTPRN-218ENST00000497977 BICC1Q9H694 974 aaKnown RBP12.96□□□□□ -0.33
PTPRN-218ENST00000497977 DBNDD1Q9H9R9 158 aa12.96□□□□□ -0.33
PTPRN-218ENST00000497977 GPRC5DQ9NZD1 345 aa12.96□□□□□ -0.33
PTPRN-218ENST00000497977 CNOT7Q9UIV1 285 aaKnown RBP12.96□□□□□ -0.33
PTPRN-218ENST00000497977 MYO3BQ8WXR4 1341 aa12.95□□□□□ -0.34
PTPRN-218ENST00000497977 ZNF541Q9H0D2 1346 aa12.95□□□□□ -0.34
PTPRN-218ENST00000497977 POTECB2RU33 542 aa12.95□□□□□ -0.34
PTPRN-218ENST00000497977 GNAI2P04899 355 aa12.95□□□□□ -0.34
PTPRN-218ENST00000497977 HDAC9Q9UKV0 1011 aa12.95□□□□□ -0.34
PTPRN-218ENST00000497977 VIL1P09327 827 aaKnown RBP12.94□□□□□ -0.34
PTPRN-218ENST00000497977 TRIM27P14373 513 aa12.94□□□□□ -0.34
PTPRN-218ENST00000497977 GMPSP49915 693 aaPredicted RBP12.94□□□□□ -0.34
PTPRN-218ENST00000497977 METTL24Q5JXM2 366 aa12.94□□□□□ -0.34
PTPRN-218ENST00000497977 EPHA10Q5JZY3 1008 aa12.94□□□□□ -0.34
PTPRN-218ENST00000497977 STRIP1Q5VSL9 837 aa12.94□□□□□ -0.34
PTPRN-218ENST00000497977 TTLL5Q6EMB2 1281 aa12.94□□□□□ -0.34
PTPRN-218ENST00000497977 C15orf52Q6ZUT6 534 aaKnown RBP12.94□□□□□ -0.34
PTPRN-218ENST00000497977 ARFGEF1Q9Y6D6 1849 aa12.94□□□□□ -0.34
PTPRN-218ENST00000497977 MED23Q9ULK4 1368 aa12.94□□□□□ -0.34
PTPRN-218ENST00000497977 PSMD14O00487 310 aa12.93□□□□□ -0.34
PTPRN-218ENST00000497977 FRAT2O75474 233 aaPredicted RBP12.93□□□□□ -0.34
PTPRN-218ENST00000497977 IFIT1P09914 478 aaKnown RBP12.93□□□□□ -0.34
PTPRN-218ENST00000497977 CLUAP1Q96AJ1 413 aa12.93□□□□□ -0.34
PTPRN-218ENST00000497977 CEP126Q9P2H0 1117 aa12.93□□□□□ -0.34
PTPRN-218ENST00000497977 SNED1Q8TER0 1413 aa12.93□□□□□ -0.34
PTPRN-218ENST00000497977 ANKRD31Q8N7Z5 1873 aa12.93□□□□□ -0.34
PTPRN-218ENST00000497977 SLX4Q8IY92 1834 aa12.92□□□□□ -0.34
PTPRN-218ENST00000497977 TAF5LO75529 589 aa12.92□□□□□ -0.34
PTPRN-218ENST00000497977 PDE8BO95263 885 aa12.92□□□□□ -0.34
PTPRN-218ENST00000497977 USP17L8P0C7I0 530 aa12.92□□□□□ -0.34
PTPRN-218ENST00000497977 HIBADHP31937 336 aaKnown RBP12.92□□□□□ -0.34
PTPRN-218ENST00000497977 IL15P40933 162 aaPredicted RBP12.92□□□□□ -0.34
PTPRN-218ENST00000497977 EPS15P42566 896 aa12.92□□□□□ -0.34
PTPRN-218ENST00000497977 SCNN1DP51172 638 aa12.92□□□□□ -0.34
PTPRN-218ENST00000497977 RSBN1LQ6PCB5 846 aaPredicted RBP12.92□□□□□ -0.34
PTPRN-218ENST00000497977 CNTROBQ8N137 903 aa12.92□□□□□ -0.34
PTPRN-218ENST00000497977 FBXW7Q969H0 707 aa12.92□□□□□ -0.34
PTPRN-218ENST00000497977 KAZALD1Q96I82 304 aa12.92□□□□□ -0.34
PTPRN-218ENST00000497977 ZNF594Q96JF6 807 aaPredicted RBP12.92□□□□□ -0.34
PTPRN-218ENST00000497977 RCAN3Q9UKA8 241 aa12.92□□□□□ -0.34
PTPRN-218ENST00000497977 AKAP2Q9Y2D5 859 aa12.92□□□□□ -0.34
PTPRN-218ENST00000497977 RIPOR2Q9Y4F9 1068 aa12.92□□□□□ -0.34
PTPRN-218ENST00000497977 YDJCA8MPS7 323 aa12.91□□□□□ -0.34
PTPRN-218ENST00000497977 EYA2O00167 538 aa12.91□□□□□ -0.34
PTPRN-218ENST00000497977 CIAO1O76071 339 aa12.91□□□□□ -0.34
PTPRN-218ENST00000497977 SASH1O94885 1247 aa12.91□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 22.8 ms