RNA–Protein interactions for RNA: ENST00000496653.4

LIMS1-213, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 4

Gene LIMS1, Length 626 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-213ENST00000496653 ANKRD44Q8N8A2 993 aa18.3■□□□□ 0.52
LIMS1-213ENST00000496653 KAZALD1Q96I82 304 aa18.3■□□□□ 0.52
LIMS1-213ENST00000496653 GPBP1L1Q9HC44 474 aaPredicted RBP18.3■□□□□ 0.52
LIMS1-213ENST00000496653 MINPP1Q9UNW1 487 aa18.3■□□□□ 0.52
LIMS1-213ENST00000496653 C6orf229H3BNL8 230 aa18.29■□□□□ 0.52
LIMS1-213ENST00000496653 GPSM2P81274 684 aa18.29■□□□□ 0.52
LIMS1-213ENST00000496653 PDE3AQ14432 1141 aa18.29■□□□□ 0.52
LIMS1-213ENST00000496653 WASHC4Q2M389 1173 aa18.29■□□□□ 0.52
LIMS1-213ENST00000496653 ZNF784Q8NCA9 323 aaPredicted RBP18.29■□□□□ 0.52
LIMS1-213ENST00000496653 CNNM1Q9NRU3 951 aa18.29■□□□□ 0.52
LIMS1-213ENST00000496653 LEMD3Q9Y2U8 911 aa18.29■□□□□ 0.52
LIMS1-213ENST00000496653 LRRFIP2Q9Y608 721 aaKnown RBP18.29■□□□□ 0.52
LIMS1-213ENST00000496653 KCNJ4P48050 445 aa18.28■□□□□ 0.52
LIMS1-213ENST00000496653 EIF6P56537 245 aaKnown RBP18.28■□□□□ 0.52
LIMS1-213ENST00000496653 AOC3Q16853 763 aa18.28■□□□□ 0.52
LIMS1-213ENST00000496653 TBC1D16Q8TBP0 767 aa18.28■□□□□ 0.52
LIMS1-213ENST00000496653 FBXO3Q9UK99 471 aa18.28■□□□□ 0.52
LIMS1-213ENST00000496653 DDX19BQ9UMR2 479 aa18.28■□□□□ 0.52
LIMS1-213ENST00000496653 GLTPD2A6NH11 291 aa18.27■□□□□ 0.52
LIMS1-213ENST00000496653 PRELPP51888 382 aa18.27■□□□□ 0.52
LIMS1-213ENST00000496653 ZC3H12CQ9C0D7 883 aaKnown RBP18.27■□□□□ 0.52
LIMS1-213ENST00000496653 MROH5Q6ZUA9 1318 aa18.26■□□□□ 0.51
LIMS1-213ENST00000496653 G3V3G9 751 aa18.26■□□□□ 0.51
LIMS1-213ENST00000496653 FZD9O00144 591 aa18.26■□□□□ 0.51
LIMS1-213ENST00000496653 MTX1Q13505 466 aa18.26■□□□□ 0.51
LIMS1-213ENST00000496653 DCAF8Q5TAQ9 597 aa18.26■□□□□ 0.51
LIMS1-213ENST00000496653 MED23Q9ULK4 1368 aa18.26■□□□□ 0.51
LIMS1-213ENST00000496653 DUOX1Q9NRD9 1551 aa18.25■□□□□ 0.51
LIMS1-213ENST00000496653 RLBP1P12271 317 aa18.25■□□□□ 0.51
LIMS1-213ENST00000496653 CHRNDQ07001 517 aa18.25■□□□□ 0.51
LIMS1-213ENST00000496653 MVPQ14764 893 aaKnown RBP18.25■□□□□ 0.51
LIMS1-213ENST00000496653 POLLQ9UGP5 575 aa18.25■□□□□ 0.51
LIMS1-213ENST00000496653 ZNRF3Q9ULT6 936 aa18.25■□□□□ 0.51
LIMS1-213ENST00000496653 TNNQ9UQP3 1299 aa18.25■□□□□ 0.51
LIMS1-213ENST00000496653 TIAM2Q8IVF5 1701 aa18.24■□□□□ 0.51
LIMS1-213ENST00000496653 ZNF804BA4D1E1 1349 aa18.23■□□□□ 0.51
LIMS1-213ENST00000496653 COL4A1P02462 1669 aa18.23■□□□□ 0.51
LIMS1-213ENST00000496653 IQCA1LA6NCM1 817 aa18.23■□□□□ 0.51
LIMS1-213ENST00000496653 CIAO1O76071 339 aa18.23■□□□□ 0.51
LIMS1-213ENST00000496653 GPC2Q8N158 579 aa18.23■□□□□ 0.51
LIMS1-213ENST00000496653 PANK1Q8TE04 598 aa18.23■□□□□ 0.51
LIMS1-213ENST00000496653 ZBTB7BO15156 539 aaPredicted RBP18.22■□□□□ 0.51
LIMS1-213ENST00000496653 SRGAP3O43295 1099 aa18.22■□□□□ 0.51
LIMS1-213ENST00000496653 TNIP1Q15025 636 aa18.22■□□□□ 0.51
LIMS1-213ENST00000496653 SLC51AQ86UW1 340 aa18.22■□□□□ 0.51
LIMS1-213ENST00000496653 ZNF526Q8TF50 670 aaPredicted RBP18.22■□□□□ 0.51
LIMS1-213ENST00000496653 ZNF594Q96JF6 807 aaPredicted RBP18.22■□□□□ 0.51
LIMS1-213ENST00000496653 LTBP1Q14766 1721 aa18.22■□□□□ 0.51
LIMS1-213ENST00000496653 SBF1O95248 1867 aa18.22■□□□□ 0.51
LIMS1-213ENST00000496653 EYA2O00167 538 aa18.21■□□□□ 0.51
LIMS1-213ENST00000496653 METTL24Q5JXM2 366 aa18.21■□□□□ 0.51
LIMS1-213ENST00000496653 C15orf52Q6ZUT6 534 aaKnown RBP18.21■□□□□ 0.51
LIMS1-213ENST00000496653 L3MBTL3Q96JM7 780 aaPredicted RBP18.21■□□□□ 0.51
LIMS1-213ENST00000496653 VEGFAP15692 232 aaPredicted RBP18.2■□□□□ 0.5
LIMS1-213ENST00000496653 RRP1P56182 461 aaKnown RBP18.2■□□□□ 0.5
LIMS1-213ENST00000496653 PTPN12Q05209 780 aaKnown RBP18.2■□□□□ 0.5
LIMS1-213ENST00000496653 UBE4AQ14139 1066 aa18.2■□□□□ 0.5
LIMS1-213ENST00000496653 PODNQ7Z5L7 613 aa18.2■□□□□ 0.5
LIMS1-213ENST00000496653 COA1Q9GZY4 146 aa18.2■□□□□ 0.5
LIMS1-213ENST00000496653 COPRSQ9NQ92 184 aa18.2■□□□□ 0.5
LIMS1-213ENST00000496653 RIPOR2Q9Y4F9 1068 aa18.2■□□□□ 0.5
LIMS1-213ENST00000496653 ZNF541Q9H0D2 1346 aa18.2■□□□□ 0.5
LIMS1-213ENST00000496653 RIMBP2O15034 1052 aa18.19■□□□□ 0.5
LIMS1-213ENST00000496653 PLIN1O60240 522 aa18.19■□□□□ 0.5
LIMS1-213ENST00000496653 ECE2O60344 883 aa18.19■□□□□ 0.5
LIMS1-213ENST00000496653 LMOD1P29536 600 aaPredicted RBP18.19■□□□□ 0.5
LIMS1-213ENST00000496653 IL15P40933 162 aaPredicted RBP18.19■□□□□ 0.5
LIMS1-213ENST00000496653 RFX5P48382 616 aaPredicted RBP18.19■□□□□ 0.5
LIMS1-213ENST00000496653 CIAPIN1Q6FI81 312 aa18.19■□□□□ 0.5
LIMS1-213ENST00000496653 ZNF804AQ7Z570 1209 aa18.19■□□□□ 0.5
LIMS1-213ENST00000496653 C16orf71Q8IYS4 520 aaPredicted RBP18.19■□□□□ 0.5
LIMS1-213ENST00000496653 COG6Q9Y2V7 657 aa18.19■□□□□ 0.5
LIMS1-213ENST00000496653 DICER1Q9UPY3 1922 aaKnown RBP18.19■□□□□ 0.5
LIMS1-213ENST00000496653 PUM3Q15397 648 aaKnown RBP18.18■□□□□ 0.5
LIMS1-213ENST00000496653 DBNDD1Q9H9R9 158 aa18.18■□□□□ 0.5
LIMS1-213ENST00000496653 TAF1P21675 1872 aa18.18■□□□□ 0.5
LIMS1-213ENST00000496653 HMMRO75330 724 aa18.17■□□□□ 0.5
LIMS1-213ENST00000496653 DDNO94850 711 aaPredicted RBP18.17■□□□□ 0.5
LIMS1-213ENST00000496653 PDE8BO95263 885 aa18.17■□□□□ 0.5
LIMS1-213ENST00000496653 RPS12P25398 132 aaKnown RBP18.17■□□□□ 0.5
LIMS1-213ENST00000496653 CEP126Q9P2H0 1117 aa18.17■□□□□ 0.5
LIMS1-213ENST00000496653 COL4A5P29400 1685 aa18.16■□□□□ 0.5
LIMS1-213ENST00000496653 TAF5LO75529 589 aa18.16■□□□□ 0.5
LIMS1-213ENST00000496653 IFIT1P09914 478 aaKnown RBP18.16■□□□□ 0.5
LIMS1-213ENST00000496653 CXCL9Q07325 125 aa18.16■□□□□ 0.5
LIMS1-213ENST00000496653 LRRC24Q50LG9 513 aa18.16■□□□□ 0.5
LIMS1-213ENST00000496653 HELBQ8NG08 1087 aaPredicted RBP18.16■□□□□ 0.5
LIMS1-213ENST00000496653 PUS3Q9BZE2 481 aaKnown RBP18.16■□□□□ 0.5
LIMS1-213ENST00000496653 HACL1Q9UJ83 578 aa18.16■□□□□ 0.5
LIMS1-213ENST00000496653 GJA3Q9Y6H8 435 aa18.16■□□□□ 0.5
LIMS1-213ENST00000496653 SLC5A1P13866 664 aa18.15■□□□□ 0.5
LIMS1-213ENST00000496653 ATP8B2P98198 1209 aa18.15■□□□□ 0.5
LIMS1-213ENST00000496653 DOK7Q18PE1 504 aa18.15■□□□□ 0.5
LIMS1-213ENST00000496653 CAVIN4Q5BKX8 364 aa18.15■□□□□ 0.5
LIMS1-213ENST00000496653 RPAP2Q8IXW5 612 aaPredicted RBP18.15■□□□□ 0.5
LIMS1-213ENST00000496653 VGLL2Q8N8G2 317 aa18.15■□□□□ 0.5
LIMS1-213ENST00000496653 KLHDC4Q8TBB5 520 aa18.15■□□□□ 0.5
LIMS1-213ENST00000496653 GPR101Q96P66 508 aaPredicted RBP18.15■□□□□ 0.5
LIMS1-213ENST00000496653 SIL1Q9H173 461 aa18.15■□□□□ 0.5
LIMS1-213ENST00000496653 NMRK2Q9NPI5 230 aa18.15■□□□□ 0.5
Retrieved 100 of 20,778 RNA–protein pairs in 26.7 ms